Array 1 1-426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVT01000001.1 Petrotoga sp. Shatin.DS.tank11.9.2.9.3 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 1 25 100.0 40 ......................... TACACTATTTCGGAGGAAGTGAAATGTTTTCTAATTGGAT 66 25 100.0 40 ......................... TACACTATTTCGGAGGAAGTGAAATGTTTTCTAATTGGAT 131 25 100.0 44 ......................... TACACCATCTCCTGTGGATGTTGAGGAAACACCTTCTCAACAAA 200 25 100.0 41 ......................... TACACAAGATATGTTGGATGGAGAAATGAAATTTCTTTTGC 266 25 100.0 44 ......................... GACACTTGTATCTGCTGTCGGGCACCCCGACACCGCGAAGGTGT 335 25 100.0 42 ......................... GACACAGAGTTGTTAAGAGAAGAATAAAGGACTTTACTACGA 402 25 92.0 0 ..............G.......C.. | ========== ====== ====== ====== ========================= ============================================ ================== 7 25 98.9 42 GTTTTTATTCCTTAAAGGTAGGATA # Left flank : | # Right flank : AAGACACAAGCGTCATTTGCTACGCAAATGAGAATTAGGAAAGAGTTTTCTAAGGCATTATGAAAAATTCTTTTTGCACAAAGCGACAAAAATAGTGTATCATAAAAAATTACATTTGTCAAGCAAAACTTTGAGGAATTGTTAAAAATCAATTCAAAGGCTTATGGAACAAACCTTGTGACTTTTAGCACTTGTCTGTCGATCCCCCGGGTTTTTTACCTTATTGGAGGTCGACAGACGTTTTTTTTATATCATTTTCTGTTTTAGGTTAAATAGGTAAATATTAGTTTATTGGAAGTTAATCCAAGCGGTTTTGTGTTTAACTTGAGGTTGATCGTCGTTTGCGGGGCAAACGAGAATAAGGAAAGAACTTTTAAATCATTACAAATAAAACGCTTTGCAAGAAACAGCAAAAAACGTTTTGCACAAATCGGCAAAATTTAGTGCTTAGTTTTATATCATGATATAATTAAAGCGAATATTTGAGAATGCCACAAGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTCCTTAAAGGTAGGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1226-1770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVT01000002.1 Petrotoga sp. Shatin.DS.tank11.9.2.9.3 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 1226 30 100.0 38 .............................. ATTCAAACCTTTCTTTTTTCTTTTGAAGAATTGTTTCC 1294 30 100.0 36 .............................. CCTTAGGCTCTGGATTAGACTTAGATTCTAATTTAG 1360 30 100.0 37 .............................. TTTTGATAAAATTCGAAGATTTCTTGCAATTTCATTG 1427 30 100.0 37 .............................. AGATCTTTATTTTCGTCCAACTCATGTATAATTTCTC 1494 30 96.7 40 ..G........................... CATAATCATTATACAGTTCTATTGTTCTTTTCTTTCTTCT 1564 30 96.7 38 ..G........................... CCTTTTATAGGGGTCATACTGACAACTTTCAATGATAT 1632 30 76.7 78 ..G.....TT................GTTT TGCTGCTTTATGCAAAAAAGGTTTTCGTAATGCTTTTGAGTAAGTTTCCAATCCTCATTTGCGAAGCAAATGACGTCT 1740 30 70.0 0 ..G....G.......C........GCTTTT | T [1745] ========== ====== ====== ====== ============================== ============================================================================== ================== 8 30 92.5 44 GTATCTATCCTACCTTTAAGGAATAAAAAC # Left flank : CGCTTGTATCTAAGCCTACCTTTAAGGAATAAGTTTTGCTGATCTGTGCAAAAAGACTTTTCGTAATGCTTCTGAAAAAACTTCCAAATTCTCATTTGCGTAGCAAATGACGTTTGTGTCTTAGCCTACCTTTAAGGAATAATTTTTGCTGTTTCTTGCAAAACGTTTTTTTCGTAATGCTCTAAAAACTCTTCCCTTATTCTTTTTTGCTTCGCAAACGACGTCTCACGCAAACGACGATCAACCTCAAGTTAAACATAAAAGCCGCCTAGATTAACTTCCAATAAACTAATATTTATCTATTTAACCTAAAACAGAAAATGATATAAAAAAATGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGCTAAAAGTCACAAGGCTCGTTCCATAAACCTTTGATTTGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : TGCTGCTTTATGCAAAACGTTTTTTGTTGTCTCTTGCAAATTGTTTTATTTGTAATGTTCTAAAAGTTCTTCCCTTATTCTCGTTTGCCCCGCAAACGACGTTTCACGCAAACGACGTACAACCTCAAGTTAAACAAAAAAGCCGCCTAGATTAACTTCTAATAAACTAACTTTCATCTATTTAACCTATATCAAAAAATAATATAAAAAAACGTCAGTCGACCTCCAATAGAGTAAAAAACCCAGCGGATCGACAGACAAGTGTTAAAAGTCACAAGGCTCGTTTCATAAGCCTTTTAATTGATTTTTAACAATTCCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTATTTTTGCTGCCCTGTGCAAAAGGGCTTCTTTGCAATGCCTTAGAATCAATTTCCAAATTCTCATTTGCGAAGAAAATGACGTTTGTGTCTTATCCTACCTTTAAGGAATAAAAACAGAATAGAAGGATCTCCAACGTACT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2215-2647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVT01000002.1 Petrotoga sp. Shatin.DS.tank11.9.2.9.3 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2215 30 83.3 38 TGTCT......................... AGAATAGAAGGATCTCCAACGTACTGCCAAACTCCACC 2283 30 96.7 39 ........T..................... AATCCAGATCTTGGAACCGTTCTTCTTAGTGGTTCTGGG 2352 30 96.7 35 ........T..................... TTGGGCAACATAAAGTATGTCGCCCTTCCCGATGG 2417 30 93.3 38 ........T..................C.. TCTCTCTCTTCAGCATCTTTCCATTCGGAAGCTGATTG 2485 30 100.0 35 .............................. ATTCATCTATGATGTCATAGAAAGTCTCATCGAAT 2550 30 100.0 38 .............................. TTTCTTTGTTTTCAGTAACTTCAGTATAATATTGGGAG 2618 30 86.7 0 ..........................GTTT | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 93.8 37 GTGTCTATCCTACCTTTAAGGAATAAAAAC # Left flank : CTCATTTGCGAAGCAAATGACGTCTGTGTCTTAGCCTACCTCTAAGGAATGCTTTTGCTGCTTTATGCAAAACGTTTTTTGTTGTCTCTTGCAAATTGTTTTATTTGTAATGTTCTAAAAGTTCTTCCCTTATTCTCGTTTGCCCCGCAAACGACGTTTCACGCAAACGACGTACAACCTCAAGTTAAACAAAAAAGCCGCCTAGATTAACTTCTAATAAACTAACTTTCATCTATTTAACCTATATCAAAAAATAATATAAAAAAACGTCAGTCGACCTCCAATAGAGTAAAAAACCCAGCGGATCGACAGACAAGTGTTAAAAGTCACAAGGCTCGTTTCATAAGCCTTTTAATTGATTTTTAACAATTCCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTATTTTTGCTGCCCTGTGCAAAAGGGCTTCTTTGCAATGCCTTAGAATCAATTTCCAAATTCTCATTTGCGAAGAAAATGACGTTTG # Right flank : TTGCCGTTTTGTGCAAAACGCTTTTTTATNNNNNNNNNNNNNNNNCATTTGCGTAGCAAATGACGTTTGTGTCTTAGCCTACCTTTAAGGAATAATTTTGCTGATCTGTGCAAAAAGGCTTTTTTCATAATGCCCTAGAAACAGCTTCCAACTCTCATTTGCGTAGCAAACGACGCGTGTGTCTAAGCCTACCTTTAAGGAATAAGTTTTGCCGTTTTGTGCAAAACGCTTTTTTATAATGCCTTTGAATTATTTCCAAAATCTCATTTGCGTAGCAAATGACGTTTGTGTCTTAGCCTACCTTTAAGGAATAAGTTTTGCTGCTTTATGCAAAAAAGGTTTTCGTAATGCTTTTGAGTAAGTTTCCAATTCTCATTTGCGAAGCAAATGACGTCTATGTCTTAGCCTACCTTTAAGGAATAAAAACAATAAATTTCCGCCCAACTCTTTAAAATGCTTTTTATCTTATCTATCCTACCTTTAAGGAATAAAAACCCTCA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : GTGTCTATTCTACCTTTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 18038-18599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVT01000002.1 Petrotoga sp. Shatin.DS.tank11.9.2.9.3 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18038 30 96.7 37 ....C......................... AAGAGAATACGGATATAGTAACTGAAGAGTTGATAAA 18105 30 96.7 37 ....C......................... AATCATATACAGGACCAGACTATAAACCTATATTTAG 18172 30 96.7 37 ....C......................... CCGATAGTAACTTCGACCAACTTATTTTTTTGATTTT 18239 30 100.0 36 .............................. ATTATATTGGGAGGGAGAGAGCCAATAAAGTTTTAA 18305 30 100.0 36 .............................. TCATACTCTTTCCATAACATACTTTCTTCTCTACCA 18371 30 100.0 36 .............................. AATTTAAACTTGCTAAAGTTGCTTGAGTTGCGAAAT 18437 30 100.0 38 .............................. CTGAATTTCTTTTAATCTTTCGTCAATTTCATCTGTTT 18505 30 100.0 38 .............................. CTGAATTTCTTTTAATCTTTCGTCAATTTCATCTGTTT 18573 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.8 37 GTGTATATCCTACCTTTAAGGAATAAAAAC # Left flank : AAGAAAGATTATCGACACTTAGTTTTATAAAAAGCCTCATCTTATCACCTCGTGTATATTATAACACTTAGGAAAAAAATCTAAAATAAGAAAAGAGAAAAGGTTATTGAAAGCTTACGGTTTATCTCTATACTCCTGATGTTCGGTCTGATTTTTACAACAATTTTCTTTTAAAATTGTTGATAGTGAGTATAACAAAAATACCAATTCATAAAATAAGATGGCATTTTGTTGCCCATACAACCCCAAGTTAATCAAAAAAACCGCTTGGATTAACTTCCAATAAACTAATATTCATCTATTTAACCTAAAAAAGAAAATGATATAAAAAAAATGTCTGTCGACCTCCAATAGGGTAAAAAACCCAGGGGATCGACAGACAAGTGTTAAAAGTCACAAGGCTTATTCCATAAGCCTTTGAATTGATTTTTAACATTTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : | # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTATATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //