Array 1 329-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWKX01000037.1 Klebsiella pneumoniae strain VRCO0213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 328 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 269 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 208 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 147 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGAGTGACAGAGAGATTGACCGCCTTGTTTTGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182137-179000 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWKX01000003.1 Klebsiella pneumoniae strain VRCO0213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182136 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182075 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 182014 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 181953 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181892 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181831 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181770 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181709 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181648 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181587 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181526 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181465 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181404 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181343 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181282 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181221 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181160 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181099 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181038 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180977 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 180916 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180855 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 180794 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 180733 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 180672 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180611 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180550 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180489 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180428 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180367 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180306 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180245 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180184 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180123 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180062 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180001 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 179940 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 179879 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 179818 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179757 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179696 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179635 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179574 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179513 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179452 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179391 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179330 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179269 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179208 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179147 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179086 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179028 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //