Array 1 102455-103580 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOD01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51297 N51297_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102455 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 102516 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 102577 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 102638 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 102699 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 102760 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 102821 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 102882 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 102943 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 103004 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 103065 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 103126 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 103187 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 103248 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 103309 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 103370 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 103431 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 103492 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 103553 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119839-121502 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOD01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51297 N51297_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 119839 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 119900 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 119961 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 120022 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 120089 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 120150 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 120211 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 120272 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 120333 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 120394 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 120455 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 120516 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 120577 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 120638 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 120699 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 120760 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 120821 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 120882 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 120943 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 121046 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 121107 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 121168 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 121229 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 121290 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 121351 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 121412 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 121473 29 96.6 0 A............................ | A [121499] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //