Array 1 808272-807266 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQD01000003.1 Streptomyces pactum strain ACT12 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 808271 29 100.0 32 ............................. AGCGGGTTCACCGTGATGTACCCGGCGTCCAC 808210 29 100.0 32 ............................. CATCGGTGGGCCTGGCCGGAGTTGGCGGATCC 808149 29 100.0 32 ............................. CCCCCGGCGGGGTCACCCCCGCCGCCTTGAGT 808088 29 100.0 32 ............................. GGTCGCCTTGATGTTCAGCTTTCCGATGTGCC 808027 29 100.0 32 ............................. CTTCGGGACGATGGGGTAATCCACGAAAGGGA 807966 29 100.0 32 ............................. AGCGGCTTGAGGACGGACTCCCACATGAACTT 807905 29 96.6 32 ............................A CCTCCGGCGCGTTCTGCTATCCCTCTCACCCA 807844 29 100.0 32 ............................. TCGCCGGTCACCTCGTCCACGCCGATGCCGAC 807783 29 100.0 32 ............................. GGCACCGCGTCACGAATCGACCGGGCTACGAC 807722 29 100.0 32 ............................. CGAGGCCGCTCCACCAGCTTCACGCTGTACCG 807661 29 100.0 32 ............................. ACGTAGTACGGCCGACCAGCCCCGGAGGGCTA 807600 29 100.0 32 ............................. CACCAGGCGCGCCGGTCCGGCGACGGGGACGC 807539 29 100.0 32 ............................. GCGGCCCCCATCACCACCGACCAGCGCGCCAC 807478 29 100.0 31 ............................. GCTCACGGCCCCCAGCACGTACGGGCCTGGC 807418 29 96.6 32 .......T..................... AGCGGCAAGGACGTGCGCCCGTGAGCGCCGAA 807357 29 89.7 32 ........T........A.......C... CGGTCGTCGGCGTCGCGCTGGAGGCCAGCCAT 807296 29 89.7 0 .................A...T.....T. | CC [807271] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCTGCGCGGCCATCAGGGCCTGGAGCTCGTCGCCGACTTCCTCAAAAGCGACAGCGTCCGCCACCTGTTCGGCCACGGCGAAGGCTTCCCAGGCGGCTGCCATGACCTGGGCACGGTCCGTCGAATCCAGGGACGCGTCCAAGGGCTTCAACGTGTCTGGTAGTGACACTCCGATACTCCATGTCTCGCTCAGTCAGGCAGAGATCGTCTCACTCGGTGAAGACAACGCAGGGCGCCCTGTGGATAACCACCTAGGGCTCGGTGTTGAGCCAGAAGGACAGGCCCTACAGGTGGGAGCGGCCGTCCTGGGCGAGAATGGGAGTAGAGGAGGTTGTCGTGTCATCACCGTTCCTTCGGGACACGGATCAGTGCGAGGTTGACGTAGGACGCAGCCCGCTCGACCCCAGTACGTAATCGGCTGCAATGCCTCATTTGCCGGAATCCCTTAAAGTCCCTGAGAACACGCTTCGGCGGTCATAAACTCGCAGGTCGAACAGT # Right flank : ATGGCGACGAGGCGCTCAACTGCTGACGCCGTCGCGCAGCAGCGTTCTGCCGTGCCCCGCGCCCCGGTCAGCGCACGGCACGGACCATCACAGTCAGGACCGGCGACGCCGGTGACGGCTGGCTCTGTCCGATGTCCTCGTACCCCCACGACCGGTAGAGAGCGTGGACCTTTCCGTCCCCGGCGGCCGGGTTGACCATCAGCGTGACGAACGGTTCGTCGCGCGTGGCGAGGAGGGCGTCGTGGATACGCCGGGCAGTGCCGGTCTTCCGCCACGCCGGCCGGACGCCGATCTCCTTCAGAGCCACGGCCGGGCGCTCGGCGTATGGGGCCGCAGGCGCCGGGCTGGTGCGCTGCCAGTAGCGGTCGCCGTGCTCGATGGTGTTGGCGTAGGCGTATCCGACCGGATGCTCGTCCGCGTAGGCGAGGACTGCGGTGAATCCCGGCTCGCCGCCGTGCCGGTCCAGGCGCTCGCCGAAGGCGGTGACCGCGTAATTGGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 814292-813653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQD01000003.1 Streptomyces pactum strain ACT12 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 814291 29 100.0 32 ............................. GAATCCAAGGCCACGGGCCCCGCTCCCTGGCG 814230 29 100.0 32 ............................. GTCATGTGCCCGCCCGCGATCGGCTGCTACAA 814169 29 100.0 32 ............................. GTCATGTGCCCGCCCGCGATCGGCTGCTACAA 814108 29 100.0 32 ............................. CGGGAACCGAGCGCTGGGGTAGGCACGGTCCC 814047 29 100.0 32 ............................. GCTGATCCTGCGGTGACGATCCCGCAGATGAT 813986 29 100.0 32 ............................. GCCTGCCGGTCCTGCTCCCGCTGCGACGGCTC 813925 29 100.0 32 ............................. GCGTGCGTGATGGGCGGCATCGTCTACCTCCC 813864 29 100.0 32 ............................. GACGCCAACCGCAGCGCCTACGACGCGCAGAT 813803 29 100.0 32 ............................. TGACCCCAGTTCGCACTACCTTGCTGATCCCG 813742 29 100.0 32 ............................. TGCTGGCGGGGCACGAACGCGGCCACGAATTT 813681 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATAGTCCC # Left flank : GCACGCGAACGCCGGGGTGGCCTTGCCGACGTCGTGCACACCGGCAAGCCATACGGCAAGGGCACGCGCGTCCGGCTCCCCCTGCGGCAACGCCTCGGCGATCAGCTTCCGCACTCCTGCGGGCAGCCACCGGTCCCACAACAAGCCCGCCACCGCGGCACTGTCCTCCATGTGCCGCCATAACGGCAGCCAACCGTCGGTGTCATAATCGTGCTTGGCCCATACCGACCTAGCCGGCTCCCCAAGCCGACGTAGCAGGCCAGAACGGGCGTTCCTCCCATCCCTCCTCATGAGTGATTGATACAGGGAAAACCCGGTTCCACACGCCAGAACGAGAAAACTGAAGGGTTCGCAGGGAGACGGCGCTCTCAAGCCGTACGATGATCGGCTACTTCCGGGACCACTTGCGGATCGAAGGACGCCATATGTCTAATTTGTCGGAATCTGTGAAAGTCGCTGAAAGTACACTTCTGCCTCAGTAAACTCGCAGGTCAAACAGT # Right flank : GCGACGAGGGCTGTCTGGTCAGACGCCGTCGGGGCGCAGCGCGCTCAAGAAGCTGCTCCATGCGGGGGCAGAGACGGGAAAGGGGCGGCGATCGCGGTCCTTGGCGTCACGGACCAGTACGCCGGCGCCAACCGCGGCAACGCAGGCCTCCACGCAGGCTTCCTCGAAGTCGGTGCTGTAGCTGCTCTTGTACCAGCCCGTGGGCGGGAGCGGCATGAGGTCCTCCTGACAACGGTTGGGAGCGGGCGGAGACCCGTGCCCGCCCGGCGGAGACTACGGATCAGCAGACCTGCCCGCAGGCGTGTTGTTGTGCAGCAACCCGAAGGAGAATAGGGGAGACGTCATGTCGCATGAGGCAAGGCCGCCACGGTGGACGGCGCAGGAGATGGACGACTTCGAGAAATTCAGCTCCAGCTTGGTGAGGGTCCATACGGCGGTTTGTAAGGAACCGGCTGGCCCGACTTCGCGTCCAACAGAATACGGTCCCCCAAGGGGTGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 824083-825032 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQD01000003.1 Streptomyces pactum strain ACT12 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 824083 29 100.0 32 ............................. GGAGAGCAGTAAATGGAATTCACGATCTCGAC 824144 29 100.0 32 ............................. GGACGGATGGAGTGGACGGACGGGGACGGAGC 824205 29 100.0 32 ............................. GCCTGCCCGACCACATTGTGGGAGCGCCTCCT 824266 29 100.0 32 ............................. GCCGGTGGCTCGCTGAAGAGGAGGTCGGCGCT 824327 29 100.0 32 ............................. CCGCTGGCAGCCTGATGGCTGTCACGTTCGAG 824388 29 100.0 32 ............................. CTGGCCCGCATCGCGCTCCGCAAGATGTGCCT 824449 29 96.6 32 ............................A CCCGGCGGCCGCGAGGCGGTCCGTCGTGCGGG 824510 29 100.0 32 ............................. GGGGCGCGAGTTTGGGAGCGGACGGCCCGGAG 824571 29 100.0 32 ............................. GACCGGGGCCTGAAGGGGTGCGGCCGGTCCGC 824632 29 100.0 44 ............................. GGGTCCGGGTCCGGGTCCGGGTCCGGGTCCGGGCGCTGATGCTC 824705 29 96.6 32 .......................G..... TCACGTGCTGGCCCGCCTCATACCGCCACACA 824766 29 96.6 32 .......................G..... GCCATCGACGGCTTCACCCTCGAGAACACGCC 824827 29 96.6 32 .......................G..... GGTCATCTATCTCCTTCGGTGGCGGGTGCCTT 824888 29 96.6 26 .......................G..... GACTCCGTCACCACGGACGCGTCCGG 824943 29 89.7 32 .................C.....G.C... TGGGCCATGATCTGCGCGGCCTGGTCCAGTTC 825004 29 86.2 0 ....................CC.G.A... | ========== ====== ====== ====== ============================= ============================================ ================== 16 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATAGTCCC # Left flank : AGGCGTCAACCACGATGGCCCAGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTGACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGCGTGTTCGTGGGCAATCCCTCCGCCCGGGTCCGCGACGCCCTCTGGGAAGAAGTCCGCCAGTACGCAGACCAGGGCCGCGCCCTGCTGGCCCACACCATGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCGTCACCCTGATCCACCGCCCAGACCCGAACGCACCCACCGCCGCCCCAACTCCCCGGAACGGTCCGCCATCCGGCTGGAGCAGAGCCTCCAAACGCCGACGCTTCGGCAGAGGCTGATGCAAGTCGAGCCACGTATGCCCTATTTGTCAGAATCAAAGCAAGTACTCGAAAACGGCCCGCAGCGCCAGTAAAGCCGCAGGTCATCCAGT # Right flank : CTCGGCCGAGCCCGCCGGCCCCGCGCTTGATCGACGTCCTGTCCACAGAGCAGACTGCTTCTCATGGGATCAGTGGGCATGGCCACCAGGCTGCGGATCGGACAGTGCCGATGAGTGCCGCCCTGCCCTTCTTCCGTTATCACCCAGACCCCCTTGCAAGCGGGTCCATCTGCGCGGCCGCCGAGACGTGTGCCTGCTGCCGGCGCGACAGAGGATGGATCTACACGGCAACCTTCTACTCCGCTCAGGACGTCAGCGGTCGGTTCTGCCCTTGGTGCATCGCAGACGGGAGCGCAGCGGAACGCTTTGCGGGTGAATTCACTGACTCCTACGGGCTCGACGGTGTCAGCGAGGACGTATTGCACGAGGTCACCCGCCGCACCCCGGGATTCCACGCCTGGCAGGATCCGCACTGGCTCGTCCACTGTCAGGACGCGGCCGCCTTCGTGGGCGAAGTCGGATACGCCGAGCTGGCGGCGCATCCCGAAGCGCTAGACCAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 183553-180812 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQD01000008.1 Streptomyces pactum strain ACT12 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 183552 29 75.9 32 AC..G........AC..A.....A..... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 183491 29 96.6 32 ...........T................. GTGCCGCCGTCGGTGGTGACCCAGCCGAGGCA 183430 29 96.6 32 ....................A........ TTGCAGCCGGTGGCGTCCAGCTCGACGACCCA 183369 29 89.7 32 CC...................A....... CCAGCGTCGCTCATGTGGACTCCGTCCGTGCC 183308 29 96.6 32 .................A........... ACCGTCGTTTTCTCCCACCTGGCACACCGGAT 183247 29 96.6 32 .......................A..... GTCGGAACCGTCTCCCGTACCGGCGGAGAGAA GT,GG [183232,183236] 183182 29 93.1 24 .....T..................C.... GGTCACTCGGCGTCTGTGGGTACG Deletion [183130] 183129 29 93.1 32 ...........A.............A... ACGTTCACGGCGAGCTCCACCGCCAGGCCGAC 183068 29 89.7 34 ......C...T..............T... AAATCGACCAGCGTATCTACGACCTCCGCCACGA 183005 29 86.2 31 ...............AT.....A..A... GCCTCGCGGCGGCCGCGGATCCCTCATGGGG 182945 29 89.7 32 AC.........................T. GTGACCAGGCGCACGCAGACCGGCATACTCGG 182884 29 93.1 33 ............T........A....... CAGACCTGTCACCCCAGAGCGCAGGTCGAAGGG 182822 28 89.7 32 .C.........T..-.............. TCGAGTGGGTCGATCGCCACCAGGCGGCCGAA 182762 28 93.1 32 ...........A.........-....... ACGCAGGACGGGAAGACGCCCGCGCTGGAGCT 182702 29 96.6 32 ............................A GTCCGCCGGCCGACGCTCCCCGGCGAGATGAT 182641 29 93.1 61 ...........T..C.............. GCATCCACGTCGGTGGACGGTACGCCCAGTTCGTCCTGTCCACGCGAGCGGAGGACGAAGC 182551 29 89.7 32 .C...........C............T.. CTCCTGGAACTTCCGCTCCCATTCCGTGGAGC 182490 29 93.1 32 .................A......G.... GACATCAGCGCCTGTCTGGGGGTGCGTAGGGA 182429 29 93.1 32 ...........T.C............... TTCTGCGTCGCCTCGGGGTACGCGTCGTCGGT 182368 29 93.1 32 .C........................T.. TGATAGACGGTCTTGCCGGCGGCGTCCGGGTA 182307 29 86.2 32 .CA........A..G.............. TACAGCGCGCGGACGGAGACGATAGCGTTCAC 182246 29 82.8 29 ..................A..A..GTT.. TGGCGCTGCGTCAGGCCGGCCTCCAGATG 182188 29 89.7 32 ........TT...A............... TGCCCAGTCGTCGTGGTCGAGCTGCACGGCGT A [182173] 182126 29 89.7 32 .............CCA............. TACCTGGTCAGTGAGCTGGAGCAGATCCTCCT 182065 29 96.6 57 .....A....................... TAGAAGGGAGGCCCGGGGGAAGGGCACTGGTGCCGTTCTCTCCGCCCGAGCGGAGGC 181979 29 96.6 32 .............C............... AACGCGAACGGCGCGCTGAGTTCTGACCAGGT 181918 29 96.6 32 .C........................... TTCGCCCGCCCGGTGCCGACGATGGTCCCGGC 181857 29 82.8 32 .C.........A.A...A.......A... TCGTGGACGTTGCCGTCCTCGTCGATGCCGGT 181796 29 89.7 32 ...........A..............G.T CAGCCGTCGCAGAAGGAGACGTCGTGGTCACT 181735 29 86.2 32 .............A....A....A....A ACGTATCCGTTCTCGAGACCGGGGATCTGATT 181674 29 96.6 32 ...................G......... GGCATGGACGTCTACCCGGTCACCGTGGTGTC 181613 29 100.0 32 ............................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 181552 29 93.1 32 ........T...........A........ TGGGACAGGCTGCCGACGGACACGGTCCGGTA 181491 29 96.6 32 ............G................ GTCACCATCGGCCAGGGCACGGATTTCGATTT 181430 29 93.1 11 ............TA............... TGCCACAGGAC Deletion [181391] 181390 29 89.7 32 C...AG....................... GATTACACGGTCGAAGCCGTGGGCATCGGCGG G [181384] 181328 29 93.1 32 ...........C..........C...... GATCCCGATTCGGGTTTCGTGGTGACGTCCGG 181267 29 96.6 32 .......................A..... GACAGCACAGCGCTGATAGCTTGCTTGATCGC 181206 29 93.1 32 ..........G..............A... GTCGGCGACGGTTCGACGTACCGGTGGTGGCT 181145 29 100.0 32 ............................. GAGGTCTGCCCATGGCAGGCAACTCTCGGCCG 181084 29 96.6 32 ..........T.................. TCCGCCAGGAGCAGCAGCCGCTCGATCGCCGA 181023 29 96.6 32 .........................A... GCGGTCTGGGACTCCGTCCTGGGCGACATCAT 180962 29 93.1 32 .....A....T.................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 180901 29 96.6 32 ....................A........ CCGGTGGGGTGGGCGGTGTGGCCGCATCACAC 180840 29 89.7 0 ............TA.............T. | ========== ====== ====== ====== ============================= ============================================================= ================== 45 29 92.4 33 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGACACCGCCACCATCCCCACCCCCACCCAGCTGATCCGCGACCTCCACCCGCTCACCACCATCGACGACGAGAACCTCCTCGTGACCCGACTGGGCGCAGACAGCGTCCGCGTCCTGCCCGTCTGGACCGACACCAACGGCCGCCCCTGGCTCGACCGCCAGGCACGCCACCGGCCGCTCCCCACCCACATCGACCCCCGAGACACAGCCACCATCCGCAACCTCATGGCCCACACCGTCCAAGTCGACCACCGATGGCTCCAAGGACACGGCGCCGAAACCAACACCCCCACCACCTGGCGGCACATCGGTGCCCTCCAAGACGTCCTCCTCCTGCCACAACGCGTCACCAGCACAGGAAGACGGCCGTATCGACTCAACGGCAAAACCCACCACCTGTCCCGACTCGACGGCCTCGTACGCGAGTAACATCACAAACACACTCGCACCTTGAAAAAAGAATCACGCAACACCCACGACATCGCAGGTCACGAAAT # Right flank : TCGGCGACGGCTGAAAAGTGGACCAGTAGCGGCGCTTGAAAGTTGACCCTCTCCAGGGGTCTGGCTCGTTGAGTCAGGCCGGGAGGAGTGGTGATCAGCGTGGAGGACTGGGCGGAGATCCGCCGGCTTCACCGGGCCGAGCAGATGCCGGTTCGGGCGATCGCAAGAAAGCTGGGGATCGCGAGGAACACTGTCCGCAGGGCGATCGCGGACGACGCGCCGCCGAAGTACCAGCGGGCTCCGAAGGGCTCGATCGTGGACGCGGTCGAGCCGCAGATCCGTGAACTTCTCGAGCAGTGGCCTGAGATGCCGGCGACGGTGATCGCCGAGCGGATCGGCTGGGACCGTGGTCTGACCGTGCTCAAGGACCGGGTCCGGGACCTGCGGCCGGCCTATCGGCCTGCGGATCCGGCCTCGCGGACGGTCTATGAGCCGGGCGAGATCGGCCAGTGCGACCTGTGGTTCCCGCCGGCCGACATCCCGCTCGGCTTCGGCCAGGT # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184706-184433 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQD01000008.1 Streptomyces pactum strain ACT12 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184705 29 79.3 32 AC..G........AC........A..... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 184644 29 93.1 32 ...........T.....G........... GTGCCGCCGTCGGTGGTGACCCAGCCGAGGCA 184583 29 93.1 32 .................G..A........ TTGCAGCCGGTGGCGTCCAGCTCGACGACCCA 184522 29 86.2 32 CC...............G...A....... CCAGCGTCGCTCATGTGGACTCCGTCCGTGCC 184461 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 90.3 32 GTCCTCTCCGCGCGAGCAGAGGTGAGCCG # Left flank : GCCGACACCGCCACCATCCCCACCCCCACCCAGCTGATCCGCGACCTCCACCCGCTCACCACCATCGACGACGAGAACCTCCTCGTGACCCGACTGGGCGCAGACAGCGTCCGCGTCCTGCCCGTCTGGACCGACACCAACGGCCGCCCCTGGCTCGACCGCCAGGCACGCCACCGGCCGCTCCCCACCCACATCGACCCCCGAGACACAGCCACCATCCGCAACCTCATGGCCCACACCGTCCAAGTCGACCACCGATGGCTCCAAGGACACGGCGCCGAAACCAACACCCCCACCACCTGGCGGCACATCGGTGCCCTCCAAGACGTCCTCCTCCTGCCACAACGCGTCACCAGCACAGGAAGACGGCCGTATCGACTCAACGGCAAAACCCACCACCTGTCCCGACTCGACGGCCTCGTACGCGAGTAACATCACAAACACACTCGCACCTTGAAAAAAGAATCACGCAACACCCACGACATCGCAGGTCACGAAAT # Right flank : ACCGTCGTTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGCGAAAACCTCCTCAACCGCACCGTGACGGCCCTCCAAGGCCTCGGCGGCGGCATCTGCGCCATCCCCGAAGATGTCCAAAGCCTGGTCGACCAGGTCTACGCCGCCGACTGGACCACCACCGCCGGCACCCACGATCTCGCCACCGAACACGCCACGCGGGCCCTCGCCGACACCGCCACCATCCCCACCCCCACCCAGCTGATCCGCGACCTCCACCCGCTCACCACCATCGACGACGAGAACCTCCTCGTGACCCGACTGGGCGCAGACAGCGTCCGCGTCCTG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCAGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //