Array 1 27104-26952 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000133.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 27103 30 96.7 31 T............................. ACCCCATTTCGTCAATCAAAAGGAGCCGCGG 27042 30 100.0 31 .............................. TGAATCCGAATCTAACCGCGCCAACCCTCTT 26981 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GGTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CTCGACCAACTCGATGGTGCGCCCGGGACGGATGGTGTTCACCTCGATGCGGCACTCGTCCATCGCCAACGTGCCCAGGATGTCGAAGCTGATCCGGGAGAGCTGAAGGCCCCGATCGGCGGTGTGGGTTTCGATGGCGTGGGTGATGAGACCGCCCAGCGGGCTGAAGTGCTGCTCGGCGGTGTTCCAAGCGCCGCTGACGTGCTCGGTGGGAACGAAACGGTCAGCGCCGGTCCGGACGAAGTAGGCGTTCTGGGACTGGGACAAGGAGTTCTCCTGCGCAACGGGGTCATGCCAAGTGCATCCTCCCCGATGCGCCTCGACCCGGAAGCCGCCACCCCCACTCCAAGCGAGCAGGTTCGGGGCCAACGTGAGCGAGCCTCAGAGGTCATGGTCGTTACCTGTCTCAGGCCAAAAGCTCCCGTAGGATCATCAGCAGTTGCACCCCTCAGTGCTTGATAACGCGAAGATAAAGTCTCGCGTTGTCGCAGGTCATTAAC # Right flank : GAGTGACGGGCCTTTGGTCCTGGTGGTCGGTAGACCCCCGGGGTAGCCTGTGCCCGCTGAACACAAAACCGGACCCCACCAACTCCTCTGGTGGGGTCCGACTCATGTCAAAGCGATATCGCTAGACACGTGCTGCGGTGCGGAGCAGGGTCGCCCACTCCGACGCGGGCATCTCCAGGTGGCCCAGCTCACGGTTCTGGGTGTCACGCATGAGCACCTGGGAAGCGCCCGTATCGCTGCGCGCCTCCACACAGTTGCCGCCCTGGCCGTTGCTGTAGCTGGACTTCTTCCAACCATCGGTCATCATGTGATGCTTCCTCGAATCTCTTCCATCCGGGATCGTGACGCGGGCACAGGCAGAGCGAAGCTTCGCAGGTCCGCGAATGTTCGCTCATAGCTTGCCACGATCTCGGGTTCCTTGAGGGTCATGCCCGTCTCTTGGCCCTCGACGTAAGCGAAGGGGCTGCTGTCAGGGGCAGTGCTCAGCCTAAACGACCCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 21306-19506 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000143.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 21305 30 100.0 31 .............................. CCGCGCCCTCGCAGCCACCCGCAACGAACGC 21244 30 96.7 31 .............................C CACCCACAAGGGTGTGGGGGCACCCGCCCTG 21183 30 96.7 31 .............................C GAGGGGCCAGCGAGGGCGTCCTAGGGTTTGA 21122 30 96.7 31 .............................C CCGGCATCTGGATCCAAGGACAGCCCGGTGT 21061 30 100.0 31 .............................. GCAACGGGTCCAAGGCGAAGGCACTGACCTG 21000 30 96.7 31 .............................C GGTCCGCCACACCTGAAGGTGCGGCGGACCT 20939 30 100.0 31 .............................. CTCCGTCTTTGAGGTCGGGGTTGAGCGCGAT 20878 30 100.0 31 .............................. CCCGTCTGCGTCGACCAGGGAGAACAGGAAC 20817 30 96.7 31 .............................C GTGCGGTGGACCGGGGGGAAATCAAGCCGGT 20756 30 100.0 31 .............................. GTTCGCAGGGTCGGCACTACAAGAGAGCTAC 20695 30 100.0 31 .............................. TACCCGCTGGCAGCAGCGGCGGCCTCCATCG 20634 30 100.0 31 .............................. ATCACCGCCGCACCCTCGGCGGACGCACCCG 20573 30 100.0 31 .............................. CCGCCTACGACATCAGCCTCCTTCACCGGGA 20512 30 96.7 31 .............................A CCGACATCACCGAGCTGCGCAGGTGGGTGGA 20451 30 100.0 31 .............................. GCGGGCACCTCGACAACACCGTCCTGGTGGA 20390 30 96.7 32 .............................A CAGTCCTGGCCACCGAGGACCAGGCGCACGCC 20328 30 96.7 31 .............................C AGCCCAAACGCCCCACCGTCCCCCGCTTGAT 20267 30 96.7 31 .............................C GCACCGCGTACAGGTCGGACAGGCCGGTCTC 20206 30 100.0 31 .............................. GTGGGCACGCCATGATGAGCGCTTACGGGCC 20145 30 96.7 31 .............................C ACGCACCGTCACCACCGGAGCGGGTGAGACG 20084 30 96.7 31 .............................A TCATCGAGACACTCCTCCCAACCCCGCGCAC 20023 30 100.0 31 .............................. CCTTGCGGCGGTCGCGTTCGGCCTTCCACTT 19962 30 96.7 31 .............................C GTGCGCGGGTGGCCCAGGTCTTCAAGGTCTT 19901 30 96.7 31 .............................T CCTCCACCGAAGGCATGAGCAGCACCCGAGT 19840 30 96.7 31 .............................A ACTCATCAGACCACGTGGACACGTACACCGT 19779 30 100.0 31 .............................. TGTGGGACGGTGCGATCCGGTCGGGTAAGAC 19718 30 100.0 31 .............................. ACCCGTCAGGGATGACGGGTCCCCCATCGTG 19657 30 100.0 31 .............................. TGTGACGTGCAGGGGTGGGTGCACTCACCCA 19596 30 96.7 31 .............................C GACACCGACGGCCTGTACCTGGAGGACCCTG 19535 30 83.3 0 ......................G..GATG. | ========== ====== ====== ====== ============================== ================================ ================== 30 30 97.8 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : AGGTCGATCGAGGGGCGGACATCGAGTCCGGACGGAACCTCGGGGTGATCTGGTGACGGTGCTGATCCTCACGAACTGTCCCGCCGGGTTGCGTGGGTTGCTCACGAGGTGGTTGTTGCAGATCGCGCCGGGTGTGTTCATCGGCAAGCCGTCGGCTCGTGTGCGTGAGGTGCTGTGGGACGAAGTCCAGCAGTACGCGGGTAACGGGCGGGCGTTGTTGGTGTACTCGACCAACAACGAGCAGGGTTTCGCCTTCGAGACCTTCGAGCATCAGTGGCGGCCGGTGGATCATGAGGGGATGACGCTGATCCAACGCTCCAGGAAGCAGGAGGCGGTGGGGGAGAGGAACGGCGGGCCACCGAAGAAGGGTTGGAGCAAGGCGTCGAAGCGACGCCGCTTCGGGAGATGATCCTCTTATGCGCGATTTGTTCCGAGTGTCTAACTCGCAACTAGTTGCAAATTCGAGCATGTTCGCTTGGTAAACGCGCAGGTCAGCGAGA # Right flank : GTCCCCTGGCGTCGTCCCGCACCACGTCCAGGGCCCTTCGGTGACGGGGATGTGGGAACGGGATCCCAGCGCTGAGAGCTACGATCACGATGCTTTTCGGGCTCTCTCGGTGCGCGTGGATCGTCCCGGGTACTGTTGCTTTCATGCACCGTGTACTGCATCTGGCCGTTACGTTGACACCGGACCCTGAGTGCGGGGGCTTTGTGGCACGTGCGGTGGACGTTGAAGTTGCTTCTCAAGGGGAAACAGAGCAGGAGGCTCTCGAAGCCCTCACGGAGGCTCTGGAGTTGTACTTTGAGGAAGACGAAGAAGCCATTCGCCAGTTGGGTCAAAACGCCAGTAAAGCTACTGAGATCGACATACGCTTGCCTGCGTGAGTCCAAGCCATACCCCGATTGTTTCGGGTCTCCAAGTAATAGCTGCGCTGAAGAATGTCGGCTATGGGCATGTTCGTACCAAAGGTAGCCATGCTGTGTTGAGATTCGAATCTCGGGTGGTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32346-30848 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000143.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 32345 30 100.0 32 .............................. GGGTGATGTACGGCGGCCAGGCCGCCCCCACC 32283 30 96.7 31 .............................C CCCGATATGCGCCACGCGCACGCACTCATCA 32222 30 100.0 31 .............................. GTGAACCACGAGTGCTGTCCTTCCTCTCCGG 32161 30 96.7 31 .............................C AGACCGTGGCGCCGGGCGAGTGGACCACCGT 32100 30 96.7 31 .............................C GAGTCCAGTTGCTCTTCCAGGGTTCTGCTGT 32039 30 96.7 31 .............................C AGCCGTGTGGTCGCTGCGCTGGTCCTCGCAG 31978 30 100.0 31 .............................. CCGGACAGAACCAGAGCCCGGACGACGACCA 31917 30 96.7 31 .............................A CGTGGGGGGAGGAACTCCTCGCCTACGCGCG 31856 30 100.0 31 .............................. AGTACACCCGCGCGTTCGGCATGGGTGGCGC 31795 30 96.7 31 .............................C CGTGCCGTCCCCGAACCCTCCGAGCGGGTGC 31734 30 100.0 32 .............................. TGATGAAGGAGCTGATCCCGTGGCCGGGCCTG 31672 30 100.0 31 .............................. GGGCGGGCCTTCCGCGTTTCGTCAGTGCTGG 31611 30 100.0 31 .............................. CACCGGATGGCTGCGAGCTCGTTCCTCACTC 31550 30 96.7 31 .............................C ATCACCACCCCCGGCGTTCCCACCGCCCACC 31489 30 100.0 31 .............................. TCGTGACCGACAGTAAAGAAAATGGAGACAT 31428 30 96.7 31 .............................T GGGCTGCCCAGTACCGTCGCTCCCACTTCGA 31367 30 93.3 32 ............................AC GACCCGCAGAGCTTCGCGGCGGGGATGCACAA 31305 30 96.7 31 .............................A TGCCGTTTCGGAGCTTCATGTCCAGGCCCAC 31244 30 96.7 31 .............................A TGCCGTTTCGGAGCTTCATGTCCAGGCCCAC 31183 30 96.7 31 .............................A TGCCGTTTCGGAGCTTCATGTCCAGGCCCAC 31122 30 100.0 31 .............................. TCTCGCCCTCGCCCTGACCCCCGGCACCCGT 31061 30 96.7 31 .............................A TCATCCGCCAGGTCCGGTTGGCCCGCCGGGA 31000 30 96.7 31 .............................A GCGCGCCGCCAAGGCCGCCGCCGACGCGGTC 30939 30 96.7 31 .............................C TCGGTCACCGGGTGCCGTTCACCGAGCACCC 30878 30 80.0 0 ..............T...A...G..G..AC | C [30854] ========== ====== ====== ====== ============================== ================================ ================== 25 30 97.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCCCGCGGGTGCCCCGCCCGCGCCCGGAACGCCCGCCGCTCCCGCGCCGCCCCCGGCGTCCGCGCAGCCACCGCAAACCTCGCCGACGCCCCCGCATCGCCTGGCCCCTGTTCGGCTACACCTTGGCCGCCTTAGCTGGTGCCTTCGCCCACCACCTCACCGCCGGATTGCTGTAACGCCAAGGCTGTCCCTCAAAACCGGGGCTCCTCCGCTACCGTTGACCACAGTGTGAAGAGCCCCGAAGACTCGATCAGTCCCCTTTGTGAAGAAAAGGTTCTGGTGTCCAACTTGCAACAAGTTGCAGATTCGAGCATGTTCGTCGGGTAAAGGCGCAGGTCAGCGAG # Right flank : GCCTCCACGCGGGATCGGGTACCACACCTCCGTCCGAAATGCCGGAAAACTGGTGAGTAGCCGCGTGGCCGTTGTCGGCCACCGGAAGGGGGCAGAACCAGCCCCGAACAGTCACTCCTAGGCGCTTAGATGTCTCCCATGACCCCCGGACCCCCTTCCCAGCCCTGGAAGGACTCCCTCTCCAAGGCCGCCCGTAGCGCCTGGGCCAAGCACGACTTCGACTCCGACGGCTGGCTCCCGCTCTACCGCCACATGGCCGACAGCGCCTTCATCGCGGGCAGACTCTGGGACGAGTGGGTTCCGCGACAGGCCCGCGCGCTCATCACCTCCGCACTCTCCGGAGACGAATCCTCGGCCCGCGCCCTGGTGGTGTGGCTCGCCGCCACCCATGACATCGGCAAGGCCACGCCCGCCTTCGCCTGCCAGGTCGAACACCTGGCCGACGACATGCGCGCCCATGGCCTGGACATGCCTCTCCAGAAGCTGATGGCCGACCGCAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 980-1131 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000087.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 980 30 100.0 31 .............................. GATCCACGAGGGTGAGTTTGCCCCACGCGTC 1041 30 100.0 31 .............................. GTACAACCCGAGGAGAACACCGTGTTCCGCA 1102 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GTCCGCAGGACTCTGGCCTGACTTGTGCCTCCTGTGCCCACCGCATCTGCCGGACCACCCGTGCCCAGGGTCTTCCCCTGCTCGGCGGCCAGCGCTCCGAGTTCGCCTCCGAGCACCAGCGGGCCAACCGACTTCAGGCCCTGCACCCCCGCCTCATCGTGTGGTTCGGGGAGTCCACGCAATCCTTCTGGGTGGCTTCCCGGACCGGTCTGTACGAGGCCAGGGACTGGGATGACCTGCTCGCCCACCTGTGGGCCCACTCCCGTCTCCGCCGCCCCCGCGTCTGGCAGCCCAAGGTCGGCGCTTGAACAAGCGCCCCCGATATCCAGAAGACCACGCCCGGACCGGGTGACGCCACCAAGCACCACCCGGCCTGTGGATAACCCACCACCCACCCGGTTATCCTCCAAGAACGAAATCCTCAAATGTGCCGCTTTTGTCTGTTTCTTGGGAAGTTGCAATTTTGGCTGGTTGCCATTGGTAAGTTCCCAGGTGAAAGA # Right flank : CCTTCGGGCAACGGGGTCAGGCGCCCGAGTTCCTGCTCCCCGCACGTGCGGGGTTATCCACAGGTCCGCTTGGTCGGGGTGGCGCGGAGTGGGGGTTCTGGTGTCTGCTCGATATCGGGGGTGCTTCACTGGCCGCCCACTTCGCGCTGCCTAGAGGCCCTTGGATGCCCGCGTTTTCGTGCGAACTCAGCGTTCCATCGACACTGCTGTCAGTGATGTGTGAAAATCACACACATGGACAAGGTCGCGCTCGGGAACCGGATCACTCAAGCTCGTGAGCACGTGGGCAAGACGCAGGAAGAGGTCGCTCTCGCCCTCGGGATGGACCGAAGTGCGGTCAGCAGGCTGGAGAAGGGCGAACGCAAGCTGAGCGTCCCCGAACTCGTCGCGGTCGCGAACGAGTTGGGGCGGCCACTGGCCTACTTCGTCGCCGACCCGGTCCCCGCGGCGGTGAGTCGTCGAAGCGACACGGTGCGAGCACATGGCACGAGCCGTTCCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4531-3648 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000131.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4530 29 100.0 32 ............................. GCGAACCGCCCGGCCGACTGGGTCAAGCCCAC 4469 29 100.0 32 ............................. CAGCCCGACCAGGGCGACGGTCACCAGCGCGG 4408 29 100.0 32 ............................. GCGCTGGGCGGTGCATGGGACGGCCCCGGGAG 4347 29 100.0 32 ............................. GGGGTGTCTGCGAGCCGAGCCCGCAGACACCC 4286 29 100.0 32 ............................. GTGTTGATGGATGAGCGGATGGGGCACGCGGA 4225 29 100.0 32 ............................. TTGACGTTCGAGCCGGACCGTGTGATCAAACG 4164 29 100.0 32 ............................. TCCACGGGTCCTCCTAGTAGGTGTCCCAGGGG 4103 29 100.0 32 ............................. GCCGGATTGTCGTCCATCGTGAACTTCCAGTA 4042 29 100.0 32 ............................. GCGCGCGCTACCGAGCTGGCCGCCACGAAGGA 3981 29 100.0 32 ............................. AGGTTTGCATGTCCGAGAGCACCAGCAACAAC 3920 29 100.0 32 ............................. GCGACATCGTGCGCACCCACCCGCTCGCCGCC 3859 29 100.0 32 ............................. GAGGTCGGCCGCGTCGCTGCGGATTTCGCGGT 3798 29 100.0 32 ............................. TCGTCGAACCACACAGCGTGGGACCCTTGGAA 3737 29 100.0 32 ............................. GCCCGGGCGGCAACCCAGGCCTCGTCCAAAAC 3676 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTCCGCCCGGGCCACACTCTGGTCGTCCCCCGTGCCGAGGTCGATCATTGGACCGCTATCGAGCCCGCGCTCCTGGCCAAGTGCATGGAGGTGGCCCAGGCCATCGGTCAGGGTGTACGCGCGGCCTGGGACGCCCCTCGTGCCGGGATGGTGATCGCGGGCTTCGAGGTCCCGCACATGCACGTCCACGTGGCCCCGGTCTGGGACCTGTCCGATTTCGACTTCACCACGGTGGAGGTGGAAGAGGACCGGAACGTTCTGGAAGCGGCGGCCGAGCGGTTGCGCACCGCCCTCCAAGAATTGGACTTCCCCCACGCCGTTCCACCCCGGACCTGACCCGCGCTGTCCCGAGTCCCTCGGTGACCTGGTTCTGTGTGTCGTTGGTCAGGGATCGGTATATGGGATCATGACGGCGTCGAAGAGGTGACCCCGGCTCGGAACTCGGCCTGATCTGAACATAACGCGGAGATAACATGCCGCGTTGTTGCAGGTCGTTAACT # Right flank : AACTTCGACACCTTCCGGTCCAAGCCCATGTCGGTGGGGTGTTCCGCTCCGGTGGCCACACGTGCCGGTTCTGCTGGGCGATTACCAGGGCAACTCCCCTGACTCGTCCTGGAGGGTTCCGGTCGGGCCGTCCGGGCCGAGGGTCGCCATGCGCACCACGACCTCGGCGCTCTCCTCCACCGGCCTCCCGATCCCGAAGGCCGCGGTCATGTCCGTCGCGGTGGTGCCGGGCTCCAGCGCGTTGAACTTGATGCCGGGGTGGACCTTGGCGTATTGGACGGTCAACATGGTGACCGCGACCTTGGACGCGGAGTAGAGCGCGATCGGCAGGGCGAACTCCGGCCGATCCGGGTTGGTCACCGCCCAGAAGGATCCGGCGCTGCTCGAAATGTTCACCACGGTGGGGTTCGACGACCGGCGCAGCAGGGGCAGCGCAGCCTCCGTGACGCGCACGACCCCCGCCGCGTTGGTGTCGAAGGCCAGCAGGGCCTTGGGGCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 85611-84422 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFF01000131.1 Nocardiopsis sp. JB363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 85610 30 96.7 31 .............................T CCACCAAGCTGAGCACCGCGAGGAACGGGTC 85549 30 96.7 31 .............................A TCTGGTGCATGCCCTGAGCCGAACTGTTGGC 85488 30 96.7 31 .............................A CCGGCCCCGGGGCCACGGTCGGGGCCCAAAT 85427 30 96.7 31 .............................G GCGGAGGTGGCGCGGCCGCCATCATCGCCGC 85366 30 100.0 31 .............................. CGACGTCCGCCGGGGCCAGACCCTGACCGAC 85305 30 96.7 31 .............................G CGCCACCGGGCAGGCGGATGGCTCCCACCAG 85244 30 96.7 31 .............................G AGACCGGCAAGCGCAAGGTGCCCGACGGTGC 85183 30 96.7 31 .............................A GTGAAGCCAACCGGGCCCGCGCTGCCCGCGG 85122 30 100.0 31 .............................. CATGAACAACGAACAGAAAAGGAACCTCATG 85061 30 96.7 31 .............................A GCTCCTCGAACCGGCAGGCAAGGAGGAGCAT 85000 30 96.7 31 .............................G CGACGGTGCCCCCGTTCGGGTCGGCGACCCC 84939 30 100.0 31 .............................. ACGCACCAGCGGGCACCCACCGGGCCCCGGC 84878 30 100.0 31 .............................. CGGCTTCTGACCCCGCGATGATCGAGATGAC 84817 30 100.0 31 .............................. ATGAGGCGGCGGTGTGCCTCATGATGCGCGG 84756 30 96.7 31 .............................G GCCCCTACCGTCCAGGTAGGGGCCGTTCACC 84695 30 96.7 31 .............................A AGGACCCCCGCACCCGCTTCCCCGACTACCA 84634 30 96.7 31 .............................T CGGACGGTGAGGCCGAGAGCTTGCCGATGCA 84573 30 96.7 31 ............................A. CCCCCGCCCCCGCAGCAAGAAGCGCCGCGCG 84512 30 100.0 31 .............................. TGCCCGACCTGGAAAAGCACCTGCACCACCT 84451 30 90.0 0 .........................GG..G | ========== ====== ====== ====== ============================== =============================== ================== 20 30 97.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GAGTTGGTCGATGAGGAAGGTGAGGTTGGGGGCGTTGCAGTAGAGCCGACCCGCCAGAGCCTTCATGGTCGGCGGTTCCTGTTTCGGGTCGATCTCCAGCAGGAGCGAGGCCGTCGAGGAGGTGATTTCCAGGTCCGCGAAGGTGGCGGCCATGCGGTCACTGGTCAGCAGGAACAGCTCGTGGTTGGCCCGCACCGCACGTGCGAGGAGTCCGTCGTCCATGGCCGGAATTCTAGCGTTCGGTTTGAGCCTCGAAATAAACCATGCGATGCTTCGAGTTTTGAACTAAAATTCCGGAAGGCTCGTGGATGCCTGGATCCCTTTGCCTCGCTATCGTTGAGCGGGTGTAGGAGGTGTTTCCTTTGGTCGATCGCTGGCCGCAGGGGCACTTGCTTGAGTGGCTCGCTTGTGAGTTTTGTCCGGAAAGTGGATCAATGTCCAACTCTCAACTAGTTGCAGATTCGAGCCTGTTCTCCGGGTGAAGCTGCAGGTCAGCGAGA # Right flank : TGTCCGCGTCGGGCAAACCAACGGGCCTGACGCCAAGAGGTTCCGATGCCTTCGTGGTGTCCGGTTCCGGGGGAGCGCCACCTGAACGTCGGTGCTCGAATCGTGCGTTTTCCGGGTTTCGTCACCTCGCGGTGCTAAACATGGCCCACACCTTGAACATCTGCACCAGGAGTGGCCCATGTTCTTCGAACACCTCACCGAGTTCGGCGGCCTGCCGGTATTCGACTACGCGTCCGCGCAGGAGCTTTCGGCCTCGACCCCCCGGTACGAACGTGACCACGTGGACACCGAAACGCAGAACGCGGCCCTTCGTACCCCCGAGGCCTACGCGTGGCGGTTCCAGGTCGAGTCCTTCGAACCCGAGGAGGAGTTCGCCGACCACTTCGGTTCCTTCGTGACCGCGGCGGACACCACCGCGGTGAAGGCCATCGTGATCGGAGCCGCGGGCGATTCCGAGTTGGACGAACCCGGCGCCCCCGCCCGTGACGCGCTCCTGGAGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //