Array 1 109790-108174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSK01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4374 NODE_1_length_556273_cov_4.01718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109789 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109728 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109667 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109606 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109545 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109484 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109423 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109362 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109301 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109240 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109179 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 109118 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 109057 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 108996 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108935 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108874 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108813 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108752 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108691 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108630 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108569 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108508 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108447 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108386 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108325 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108264 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108203 29 100.0 0 ............................. | A [108176] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127645-126459 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSK01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4374 NODE_1_length_556273_cov_4.01718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127644 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127583 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127522 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127461 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127400 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 127339 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 127278 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 127217 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 127156 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 127095 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 127034 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 126973 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 126912 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126851 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126790 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126729 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126668 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126607 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126546 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126486 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //