Array 1 35093-34028 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPJ01000028.1 Roseospira marina strain DSM 15113 NODE_28_length_42919_cov_36.5562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 35092 36 100.0 39 .................................... ATGAGGACTGGCCGATAGAGCCGGCCCGTTGGTCGCTGG 35017 36 100.0 36 .................................... GGCGATCTCTTCGGCCGAAACCCCGCCCTCTGCGCC 34945 36 100.0 37 .................................... TGCGCGCGGTGGCACAGGAGAGCGGGCTCACCGTGTT 34872 36 100.0 37 .................................... AAGGGGAACACCATATTGCAGTCCCAGAGAAACGGAG 34799 36 100.0 40 .................................... CCCGGCCGGGTCGGCTTCGTCCGTCCAGTCCAGCCACATC 34723 36 100.0 37 .................................... CAGGCTGGGCGCCATCTGTGGTCACGGCCGCGAATGC 34650 36 100.0 38 .................................... GCGGCCGTGCAGGCTGCCGCGTCGAGCAACGACAACGC 34576 36 100.0 38 .................................... AGGCTTTCACAGCCGGTGACCACCAGACACAAAAAAAC 34502 36 100.0 40 .................................... GTGAACACGATCTTGGCCTGGTCCTTGTCGGCGGCCAGCG 34426 36 100.0 36 .................................... GATCCGGTCGGGCGTGACCACGGTCTCGGCCGTGCC 34354 36 100.0 35 .................................... ATTCTGACACCCCCGCTATTCTGCCCGCGATGAGA 34283 36 100.0 38 .................................... CAGCGGGGAAATATGCACCTCGTCCCGATCGTCGTGTG 34209 36 100.0 37 .................................... TAAAACCGGTAAACTTCGTTGGTACCGTATTCGACGC 34136 36 100.0 38 .................................... ACAACAATGCGGGCGGATGTGGTTAGGCGTTTGATGAC 34062 35 88.9 0 .......C......................C-.G.. | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.3 38 CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : TCACCTACGACATCGCCGACCCGAAGCGCTGGCGTCGGGTGTGGAAGGTCATGAACGGCTACGGCGAATGGCTGCAACTGTCCGTATTCCAGTGCCGCCTGTCGCGCAAACGTCTCGTCCAATTGCGCGGGGCGCTGACCGAGGCCATCCACGACGGCGCCGACCATGTGCTCATCCTTGATCTGGGCCCGGCCGAGACCGTGAAGCCCCGCCTGGAAAGCCTGGGAAAGACCGTGGCGGTGGTGGAACGCACACCGATCATCGTGTAACCTTCACTCGGATTGCTGTGAGGCGCGAGCCGCCCGGCCGCTGCGAGCGCTCCTGTGGCGCTCGCGACTCGGGGAGCGCTCGCAAACGCTTTTTGACATTGTAAAACAAAGCGGTAGCAGGTGCGCGGCGCAGTTCCTGAGCACCGTGGGAGCCGTATCGACTCGGGGCTCTGGCGAGCGCTCGAAAACGGTGGTAAAATCCCAACTAGAGCCGCCGGTTACAGCCGAGCT # Right flank : TGGCAGCATCGCCTGCCGCGCCGTTGGCCTGATGATACGTCTGGGACGAGATCAGCAAACGCATGTTTCGGGGATCTGTCGGCGGCCGAGTGACCCAGCGCGCGCCCACATGCGCGGCGAGGTGCAGTCGGGTTGGCGCATTTTTGTTTGGCGCCCCTGCGTACACCGCGCTTACACAGCCCTTCTTACTGGCTCATGTAAGCAAAAACGGCCCCCTTTCGGGAGCCGTTTTCGAAAGCCTTATCAGGCCTTAAAACTGGAGCGGGCGATGAGATTCGAACTCACGACCCCAACCTTGGCAAGGTTGTGCTCTACCCCTGAGCTACGCCCGCATCCGTTCCTGTGTTGGCCCCTTAATTACCCTGCGGAAGGTCCGCGTTTCAAGAGGTTTTTCAAGAGCTTTTCACAGGGTCGACGAGGCTGGGTGGCGGCGCCGTGGAGCGCCGTGCCCCGTCGAGGAGCGCGACTATACTCAGCGCTCGCGGCATTGCAACACCGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10932-10101 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPJ01000002.1 Roseospira marina strain DSM 15113 NODE_2_length_409890_cov_35.5128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 10931 32 100.0 34 ................................ GTGGGTCCGAACACGCCGACCTGGAAATCCGCCG 10865 32 100.0 33 ................................ CCGGCGCACGTCAGCCCGGTCTGCCTCGACATC 10800 32 100.0 34 ................................ GCTTCCTTGGACTTCAGCGGGGACAAAATCAGAG 10734 32 100.0 33 ................................ CAGGCCGTGCCGATCACGCCCACCTTGAGCGGT 10669 32 100.0 34 ................................ TGAAATTGAGGCACAGCAGGCTGGGTCGTTTGAC 10603 32 100.0 38 ................................ ACGGGGCGCTGGACTGCTGGACTACCGCCAACGCCCCG 10533 32 100.0 34 ................................ ACGGGTGCAGCCGGGGCAATGGCGGCGAATGGGG 10467 32 100.0 34 ................................ GGGGCGGACTCGGGCGATCTCATCGAGGTCGCCG 10401 32 100.0 34 ................................ TTTTGTCGTGTCATCAATTCCAGAGGACGCCCCT 10335 32 100.0 39 ................................ ATGAGCTTGCGCGACCATTTCGCGGGGCGGGCACTGACC 10264 32 100.0 34 ................................ GCCCAATGGCAAGCCGGACGGGATCAAGATCATC 10198 32 100.0 34 ................................ TCATAGGTGAGTGTTGGCGGCCGCCACGCAGCGG 10132 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 13 32 100.0 35 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : TCGTCACGTATGACGTCGCGGTTTCGTCGCCCGGCGGCGCGAAAAGGCTGCGCCATGTGGCGCGCGCCTGCCAGGACTTTGGCCAGCGCGTGCAGTTGTCGGTGTTCGAAATCGAGGTCACACCGGCGCAATGGACCGCCTTGAAGGCGCGCCTGGAAGATGTCATCGACCCAGCCCAGGACAGCCTGCGTTACTACAACCTGGGCGCCAATTGGCAGCGCAGGGTCGAACACGTGGGGGCCAAACCCGCCCTGGATCTGAACGGACCACTAATCGTGTGACAGCACGGGAAGCGGTGGGGGGGGGCATCCGGAAAGAGGGGGCGCGAACCGCGAGCACCCCGGCAATCCCAGGCAGGTTCGCACCGGCCCTATACCCCTGAAAACATGGCGAATTCGTGCTGCACCGACAACCGTCGGGTCACAAACTGGGCTGTGAGGGGCAAGGTCCGCGCCACCGTCCCGGTTTTCCGTTCGTGTTCAGCACACTACACTGGTGGA # Right flank : ATGCGGGTCGCGCAGGAGAGCAGTTCGGCCGGGATGGTCAGGCAGGCGCGGGGCGCCCCCCCCTCACCCTGTTCCAGCGCATAATCACCGTCAGGAAGTGCACGCTGAAAATCGTGCGGGGGGTTGCAGGAGCTGGATATCGGGCGGATATGCGGCTGCCGACCACGACGCCCTTACGGGCCAGACACCACCACCTCAACCTTTTATGGTTTTAAGCTTGTTTAATTTTGCAGGAAATTTTAGGTTTATACGTGAATACACTTTTCGCGCGAGCGCCGTTGGCAGGCGCAGCCGACTGGCCTATGCCGGTTCTAACTTACTGATGGGGTCCGACGATGCGTTTTTTTCGATTAGTCCTCGCCGTGTCTTTTTTATTTGGTTTTTCAAATACAGGGCACGCTCAAAATTGCAACTCAGGCGCCTCTAATTATTACTCTGAATATAACTTTGGAGAAACACTCAGCGCACTTAGAAATGGCTGCACGAACACGCTTGGTCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8251-9934 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPJ01000039.1 Roseospira marina strain DSM 15113 NODE_39_length_12536_cov_36.5432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 8251 37 75.7 38 ..GCGCGG...........A..C.............T GCCGTGCGCGACCTGAAGACCGGGAAGAAGGGCAACTA 8326 37 91.9 38 ...................A.G...A........... CACCTCGAGGTCCAAATGCCCGTCTTGATCGGCCCCCA 8401 37 89.2 36 ..............A....A..C.............A AGGCGGACCTGCATGCGGTCGCGGCCGAATGAGCAC 8474 37 97.3 37 ....................................T CGGTGGTCTCGACCGCGCCGGCGTAGCGGTCAGCGAA 8548 37 100.0 38 ..................................... AAGATGCCACCCTTTCCTTTGCAGCAAAGGGCGCTGGA 8623 37 100.0 37 ..................................... GCCAGACTGGCTACGGCCATGACGAAGCCATCACGTC 8697 37 100.0 38 ..................................... AGGCTGGCGAGCCGATTTTGTTCCAGCACCACCAAGGC 8772 37 100.0 38 ..................................... ATGAAGACGGTGCTGACATCAGGACTGACATCATGGAT 8847 37 100.0 38 ..................................... GAGCCGCAGACGACCGCGGCCGTTCGTCCGGACAAGCG 8922 37 100.0 39 ..................................... TCGGCGCCGTCCCCTCCGAAGAAGACCGCCCCTTCTGTC 8998 37 100.0 38 ..................................... GCCGTGACGCGAAAGAACCCGTTGGCGCCGCTGGCGCC 9073 37 100.0 43 ..................................... CCGCACAGGGGGCGACGGCGGACACAGCCATACAGCCTAACGA 9153 37 100.0 37 ..................................... GGTATGATGACTGGTATCTTATGGCTCTGGACGAATT 9227 37 100.0 37 ..................................... TCGGAGAGATCAGCGCGGACCAGGCCGCGACGGACAT 9301 37 100.0 38 ..................................... GCGCAGTGCGCAAGCCATGATCCTCGGCCCAATCCACC 9376 37 100.0 35 ..................................... GCTGCCACGAACACCGGGGACTTGAGCGCTGCCAC 9448 37 100.0 39 ..................................... CGTAACTCGCGTTGGAAGCAAAATACGTCTTGCTCAGCC 9524 37 100.0 36 ..................................... GAATGACACTGCCAACACCGCTTTCATCAAGACAGT 9597 37 100.0 38 ..................................... TCAGCAGCACGTCCGCATGGCACGGCTGATCCAGCGGG 9672 37 100.0 38 ..................................... GATGTGAGGGCGGATCGGGCTCATGTGGCGACGTCTGC 9747 37 97.3 39 ....................................C ATATACGTCAACAATTCGTCATCTACTTGTTCTTCTCCA 9823 37 100.0 38 ..................................... TTTCGTCGTGCTTGCCCTTGTGGGCTGGCACGTCGAGG 9898 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 23 37 97.9 38 GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Left flank : AAATTCGCGGAAGACGCCCGCGTTCTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCGAGCGCCGTCCGCGCGACCCGAGGGCCGTAGGGCCGACGGTGATCGCGCGTCAACAAAGACGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCCCGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCACGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTTCGAAAGTCGCCCGCGTTTTCTTTTGCGCGCAACAACCTTCGGCGGGACGCGCCCGCCTCGGGTT # Right flank : GGGCCCGGCTGTAACCGGCAGCTCTGATTGAGATTTTAGCACCGTTTTCGAGCGCTCGCCAGAGCACCGAGTCGATACGGCTTCCACGATGCTCAGGGGCTGTGCCGCGCACGCGCTACCGCTTTGTTTTACAATGTCAAAAAGCGTTTTCGAGCGCTCCCCGAGTCGCGAGCGCCTCAAGAGAGCTCGAAAAAGCCGGGCAGCCCGCTCCAAACCGGACTTCGGGTGAAGGCTACACGATGATCGGCGTGCGTTCCACCACCGCCACGGTCTTACCCAGGCTTTCCAGGCGGGGCTTCACGGTCTCGGCTGGTCCCAGGTCGAGGATGAGCACATGGTCGGCGCCGTCATGGATGGCCTCGGTCAGGGCCCCGCGCACCTGGACGAGACGTTTCCGCGACAAGCGGCATTGAAAGACGGACAGTTGCAGCCATTCGCCGTAGCCGTTCATCACCTTCCATACCCGACGCCAGCGCTTCGGGTCATGGCCGGTCCCCTTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //