Array 1 630165-632177 **** Predicted by CRISPRDetect 2.4 *** >NC_017927.1 Streptococcus thermophilus MN-ZLW-002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 630165 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 630231 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 630297 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 630362 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 630428 36 100.0 30 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 630494 36 100.0 30 .................................... CATTCATTTTTTATATATCAATAAAACTTT 630560 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 630626 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 630692 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 630758 36 100.0 29 .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 630823 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 630889 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 630955 36 100.0 30 .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 631021 36 100.0 30 .................................... TTTGATGGATATCATTGATAAACTATACGA 631087 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 631153 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 631219 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 631285 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 631351 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 631417 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 631483 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 631549 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 631614 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 631681 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 631747 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 631813 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 631878 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 631944 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 632010 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 632076 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 632142 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1374473-1372720 **** Predicted by CRISPRDetect 2.4 *** >NC_017927.1 Streptococcus thermophilus MN-ZLW-002, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1374472 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 1374405 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 1374339 36 100.0 30 .................................... ATTCGGTGTACCTGAATATACTAGTCGTGA 1374273 36 100.0 30 .................................... AAACCGTTCGACAATTACAAGAGTGCGGAA 1374207 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 1374141 36 100.0 30 .................................... TATCTCTGAAGGTAAAGCTGAAGGAAATAA 1374075 36 100.0 30 .................................... TCCTAGCGATTACTCATGGACACTTGTAAA 1374009 36 100.0 30 .................................... GGGTGAAAACCCTAATAATACCACATTGAA 1373943 36 100.0 30 .................................... ATTTAAAGCAGGAATGTTCTTCAGTTTCTC 1373877 36 100.0 30 .................................... CGAGTTTATGCTCTTGAATGGTTGTCGTAT 1373811 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1373745 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 1373679 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1373613 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 1373547 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1373481 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 1373415 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 1373349 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 1373283 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 1373217 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 1373151 36 100.0 30 .................................... CTGGTAACTTTGAAATCTAACGCAGAATAG 1373085 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 1373019 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 1372953 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1372887 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1372821 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 1372755 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //