Array 1 42-1389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFDB01000077.1 Acinetobacter baumannii 121738 ab121738.contig.76_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42 28 100.0 32 ............................ CGCTTTTGCAGCTTCAGCATGTTTATGCCTTG 102 28 100.0 32 ............................ ATGAGTGAGTTTAAAGTCGGGGATCAGATTGT 162 28 100.0 32 ............................ TTTGGATATTGGATTGATGCGCGAAATCTTGG 222 28 100.0 32 ............................ TTCGGCTTCAGAACCTCCGCCGATTGATCCGA 282 28 100.0 32 ............................ TTACGAGATAAACGCAAATTTTAGGTCACTGG 342 28 100.0 32 ............................ TAGTTATAGTTTGTTAAGCAAGATCAATATTG 402 28 100.0 32 ............................ ATAAAACATAACCCATACCTTCGTGCGGGCAC 462 28 100.0 32 ............................ TTGCGGATTCATTCTCTAAAATGGACCGTGAG 522 28 100.0 32 ............................ ACGAATAGACGGTATTAAAATATCCCACGATC 582 28 100.0 32 ............................ TTCCGAAAGCCGACTCAATATCGGCGATGTTA 642 28 100.0 32 ............................ AATGATGTTGAAAGTGATTGATGGATATATTT 702 28 100.0 32 ............................ ATACTCGTTCTTATAAGCCACAGTAGCAACGT 762 28 100.0 32 ............................ TTATGCGCGAAAACCTTTTGTGTTTAAGGGCT 822 28 100.0 32 ............................ TTTCAAGAACCATGTCTTCAACATAGATTGTA 882 28 100.0 32 ............................ AACACGAACCACACCGCTTGTAATCGTAATGT 942 28 100.0 32 ............................ TTTAACTTCGCCCCCCTCGCGTGTCATCTCTT 1002 28 100.0 32 ............................ AAGTAGGCAATGCTAGAGGTATCCTCAAAGGT 1062 28 100.0 32 ............................ TTGTACAAGCGTATTGAATGTGCCCTCATCAA 1122 28 100.0 32 ............................ ATCATTGTTTTAAGTGATTCCCAGTGCTGACC 1182 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 1242 28 100.0 32 ............................ TTAAGTGGTGTTATCAAAATGAGCAATGATTC 1302 28 100.0 32 ............................ AATTAAGCACTATCGACACGTTACAAACTAAG 1362 28 92.9 0 .........A.................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ATTTAGAAAATTCAGGGACTAATCAGAAGCGTCGTGAGTGCG # Right flank : AGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 198001-194494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFDB01000005.1 Acinetobacter baumannii 121738 ab121738.contig.4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 198000 28 100.0 32 ............................ GCTATAGACATATTCGGCGTAAGCATCTTCAC 197940 28 100.0 32 ............................ GATTGTTCATTCAACCAGTTTGATAGCTCTGC 197880 28 100.0 32 ............................ TGACATAAAAATCGGAGTTATGCGTTATGCTT 197820 28 100.0 32 ............................ ACTGAGTGATGCAATAAGTACCATCGGGATTT 197760 28 100.0 32 ............................ ATAGGTACTATTACGCTTAATAGAAAAGGGGG 197700 28 100.0 32 ............................ ATGTACGACGGTGGCTCATTAGGTGCCATGGG 197640 28 100.0 32 ............................ AACAACTCAGCAAGTTGATGCCGAATTTATTG 197580 28 100.0 32 ............................ TTCTTACGAGGCTGTGCCGACGAGCAACACGT 197520 28 100.0 32 ............................ AGAAACATGGCCATTTACATCGAACTTAGTAA 197460 28 100.0 32 ............................ TTCAAAATCGATAGGGTTAGATAACTCGAAAG 197400 28 100.0 32 ............................ TCAAGCTCAAGCAACAAGGTGTCTACAGTGAT 197340 28 100.0 32 ............................ TACCTCAGTGCAATATCCTTGTGAATTATAAG 197280 28 100.0 32 ............................ ATAACTTGTCCATTGATGTTCTGTATAAATCT 197220 28 100.0 32 ............................ GAAAGATCAAGACCGTAGCTATTTTCTTTGTC 197160 28 100.0 32 ............................ ATTACTACCAAAAGTAACTTCAAAAGATCGAA 197100 28 100.0 32 ............................ TTGGCGAAGATGAACAGCACTATGTAGGGAGA 197040 28 100.0 32 ............................ AGATTATTGAGCAAATAATTGCACATTAGTAA 196980 28 100.0 32 ............................ TCAACCTGAACGCGGACATACATGTTCTGTTT 196920 28 100.0 32 ............................ TGGTTTAGCTCAATCGGCTGTTTATTCTTATG 196860 28 100.0 32 ............................ TCAGAGTTGCCGTAAACAATACGAATACGCTG 196800 28 100.0 32 ............................ TATTATTTACTCATGCGTTTACAGTGCATGAA 196740 28 100.0 32 ............................ AACAGTTTGTCCGATTAACTTTCCCATATTTC 196680 28 100.0 32 ............................ AAAGTCATTTCTTCAGTGCGGTAGGATACCGA 196620 28 100.0 32 ............................ TGGGTCTGTCACGCCGTGGTTATGCTCTGGCA 196560 28 100.0 32 ............................ ATTCTCTAACCCTGTGTGATAAAAGCCATTCG 196500 28 100.0 32 ............................ TTATCAATCATCTCCTTAAGCTGCGGTGTACC 196440 28 100.0 32 ............................ CAAACCCAACATTATAAGAATGGCTAGATTTT 196380 28 100.0 31 ............................ TCTTCCATAGACTGGTATACTCAGGGCTTAA 196321 28 100.0 32 ............................ TGTTGAAAGCCAAGGTTTTGAGAGCCACACCA 196261 28 100.0 32 ............................ ATTCAGGGACTAATCAGAAGCGTCGTGAGTGC 196201 28 100.0 32 ............................ CGCTTTTGCAGCTTCAGCATGTTTATGCCTTG 196141 28 100.0 32 ............................ ATGAGTGAGTTTAAAGTCGGGGATCAGATTGT 196081 28 100.0 32 ............................ TTTGGATATTGGATTGATGCGCGAAATCTTGG 196021 28 100.0 32 ............................ TTCGGCTTCAGAACCTCCGCCGATTGATCCGA 195961 28 100.0 32 ............................ TTACGAGATAAACGCAAATTTTAGGTCACTGG 195901 28 100.0 32 ............................ TAGTTATAGTTTGTTAAGCAAGATCAATATTG 195841 28 100.0 32 ............................ ATAAAACATAACCCATACCTTCGTGCGGGCAC 195781 28 100.0 32 ............................ TTGCGGATTCATTCTCTAAAATGGACCGTGAG 195721 28 100.0 32 ............................ ACGAATAGACGGTATTAAAATATCCCACGATC 195661 28 100.0 32 ............................ TTCCGAAAGCCGACTCAATATCGGCGATGTTA 195601 28 100.0 32 ............................ AATGATGTTGAAAGTGATTGATGGATATATTT 195541 28 100.0 32 ............................ ATACTCGTTCTTATAAGCCACAGTAGCAACGT 195481 28 100.0 32 ............................ TTATGCGCGAAAACCTTTTGTGTTTAAGGGCT 195421 28 100.0 32 ............................ TTTCAAGAACCATGTCTTCAACATAGATTGTA 195361 28 100.0 32 ............................ AACTACGACAAGCGATTGTTAGGCATCCTTCG 195301 28 100.0 32 ............................ ATGCTTAAAATGTCGGATGCGATGGAATTGCC 195241 28 100.0 32 ............................ GGCACAGGCATTGCTGAACCGAACGGAGTTAA 195181 28 100.0 32 ............................ AGCAGGCAAAATATTTTTCTCTGGTGATGCCA 195121 28 100.0 32 ............................ AGTGCATGTCGATGTAATTATGTTTATGCTTG 195061 28 100.0 32 ............................ TTTCAAGAACCATGTCTTCAACATAGATTGTA 195001 28 100.0 32 ............................ AACACGAACCACACCGCTTGTAATCGTAATGT 194941 28 100.0 32 ............................ TTTAACTTCGCCCCCCTCGCGTGTCATCTCTT 194881 28 100.0 32 ............................ AAGTAGGCAATGCTAGAGGTATCCTCAAAGGT 194821 28 100.0 32 ............................ TTGTACAAGCGTATTGAATGTGCCCTCATCAA 194761 28 100.0 32 ............................ ATCATTGTTTTAAGTGATTCCCAGTGCTGACC 194701 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 194641 28 100.0 32 ............................ TTAAGTGGTGTTATCAAAATGAGCAATGATTC 194581 28 100.0 32 ............................ AATTAAGCACTATCGACACGTTACAAACTAAG 194521 28 92.9 0 .........A.................G | ========== ====== ====== ====== ============================ ================================ ================== 59 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ACTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACAGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 203090-207457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFDB01000005.1 Acinetobacter baumannii 121738 ab121738.contig.4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 203090 29 96.6 31 ............................G TTCTAGGGAGAAAAAAGTATGGGTTCTATAA 203150 29 96.6 31 ............................C CTGATTTTGCCCAGCCAAAGCGTGATTTTGA 203210 29 96.6 31 ............................T AAAAAAGATACTCATGGACCTTGTCCGTACT 203270 29 96.6 31 ............................T TCTTGGCACAATCGAGAAAGGACATTTTTGT 203330 29 100.0 31 ............................. AGAGGGCGTTTATCACGCTGAGGTTCGCAAA 203390 29 100.0 31 ............................. GGAACTGGAGCCATGATTTGCTCAGCTTTAG 203450 29 100.0 31 ............................. TTTGATAGTAGGGCATTGATGGTCAAAAGTT 203510 29 96.6 31 ............................G ATTGAACATTGAGCCTGATTTACGAGATCAG 203570 29 96.6 31 ............................T TATCTGCATTGGCTTCTACAGACGTTTTGAC 203630 29 96.6 31 ............................C AATGGTGTGACTTGTTAGCACTAGTAAAAAT 203690 29 96.6 31 ............................T ACGTCTGAACCTCCGCCGACTGATCCACCAT 203750 29 96.6 31 ............................T ATTTATGGGTCTATGACGGTTCCGTTATCCC 203810 29 100.0 31 ............................. AACTCATTTGTTACTTCACAAACAAGCTCAC 203870 29 96.6 31 ............................T TGTAACAACTTCAATGGAGATGCCTTAATCT 203930 29 96.6 31 ............................C AATCCTTAAGACTATGGAGGGTGAATATATG 203990 29 96.6 31 ............................T AAAGCTATGCTTAATCTCTTTAAGTGCTGCA 204050 29 96.6 31 ............................G TTAATAATCAGTCTGTCGCCAGCAACTGCAA 204110 29 96.6 31 ............................G TTCGCCTGGTCATAATTACGCAAGCCAATTA 204170 29 100.0 31 ............................. TACCAACAACGGAACTTGATACTGTTCGTAT 204230 29 100.0 31 ............................. GTTGGAGGCATATCACAATAAGTCGCGCCAT 204290 29 96.6 31 ............................T CCAATTACTCCGCCTGATCCTAGTGATCCTC 204350 29 100.0 31 ............................. TTTGGGCGAAAATTAATAGTTATATGCCTGA 204410 29 100.0 31 ............................. TACGAAAAGTTGAACATGCAGAAAGCGTCGT 204470 29 100.0 31 ............................. ATAGTGGCTGCACCCCATTGTTTTAAGATGA 204530 29 96.6 31 ............................T TTAACGCCATAAGCGTCAATGAAGTCTGTAA 204590 29 100.0 31 ............................. ATCAAACTATTGAAGCAGATGTTGTTTATTG 204650 29 100.0 31 ............................. TGGGTGTAAAGGCAGGTGGTAATACAACATA 204710 29 100.0 31 ............................. ATTAAATCAGGATGTCAAAATGGCGCGACTT 204770 29 100.0 31 ............................. ATCGATTATTTCCGAATCGGTCAATGTCGAT 204830 29 96.6 31 ............................T AAAGAAGCACCAGGACCAATCGATTATTTCC 204890 29 100.0 31 ............................. TCAAAATCAAGACCAAAAATTTTCCGAGTAT 204950 29 96.6 31 ............................T AGACAAAGAGCAGCTTTACAACCAAATCAAT 205010 29 100.0 31 ............................. ATCTGTACATTTGGGGAAAAAGCTCGTCCTA 205070 29 96.6 31 ............................T GAAATAACAACGGGCTTATTCTGATCACCTG 205130 29 96.6 31 ............................C TGAGCAAAACAATAACATTTAGACGTTTTCT 205190 29 96.6 31 ............................T ATCACCATCCTCAATCAATCTCCTACAGTCA 205250 29 100.0 31 ............................. GTTAAAAGAATTTGGATTGCATATTCTTTTT 205310 29 100.0 31 ............................. AAGTAGCGGAGTACTACGACATGTTAAAAGC 205370 29 100.0 31 ............................. GCAACACGGCAATATGTTGGGATGTGGGACG 205430 29 100.0 31 ............................. TGTAATGCGAGATATTAAGAAAATCATTAAG 205490 29 100.0 31 ............................. GCCCCCATTACACGCGGGACGATATGAATAG 205550 29 96.6 31 ............................T TGTTCATGTCGCACATAACGATAAATCTTTC 205610 29 100.0 31 ............................. TCATCGTAAGCATTGAATCGCGTGCCTTCAA 205670 29 96.6 31 ............................T TTAAAGCCCCTTTTTAGGGGCTTTTTTATGC 205730 29 96.6 31 ............................T TTATTTGGCTTTGCATTTAAATCCTTTACTC 205790 29 96.6 31 ............................T TTGACTTACTTCAGTTCTCTGTTGAAGATGT 205850 29 100.0 31 ............................. GAACACCTAAGCCATGAAGTACACCAAGTAA 205910 29 96.6 31 ............................T TTAACTCCAGATGCTACCAATAAGCCAGTAC 205970 29 96.6 31 ..........A.................. CATGGGAGCTTTCATTCATATATGTCATTAG 206030 29 96.6 50 ............................T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGGATTTGGCGCTC 206109 29 86.2 31 ....G.......CC..............T CACATCACTGATGCACAACAACTATTTTCTG 206169 29 86.2 31 ...GC.......CC............... CAGGGGTCAAGTTCAGAAGATTTACGTTACA 206229 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 206289 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 206349 29 89.7 31 ....C.......G...............T TAAATGCTCAACTACTTCTGTAGCTAATGGA 206409 29 86.2 31 ...GC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 206469 29 89.7 31 ...GC.......................G TGTTTTTCGATATGCTTCGAAAGGTCATCCT 206529 29 79.3 31 ...TC.....A.CC..............T GATGGTTCAGCATATATAGCTAGACGTACAC 206589 29 86.2 31 ...GC......TG................ TCACCAAACACAACCAAAGGTGAACGGGTAT 206649 29 82.8 31 ...GC.......CC..............T TATCTGCCATACCCGACTGCTTTGTTCCTAA 206709 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 206769 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 206829 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 206889 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 206949 29 79.3 31 ..CGC.......CC..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 207009 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGTCGTGGTCAAAAAGATTATCAG 207069 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 207129 29 82.8 31 ...GC....T..TC............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 207189 29 79.3 30 ...TA......TCC..............T TCGGATCAGTCCAGTCATCATCCTCGTCAA 207248 29 82.8 31 T..TA.......G...............T ATCATTGCGCGACAGAACGCATCAATTAATG G [207251] 207309 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 207369 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 207428 29 82.8 0 .G..G...................AT..T | C [207433] ========== ====== ====== ====== ============================= ================================================== ================== 73 29 94.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTAATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAGAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGCAGTAAAATCAAATAAAATCATACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGGATGGCGTCAATTGAACAAACCCAATAAGCCACTGTTTTATATAACTTAAAATTTATTTAAAAATCCCAGTGTACATCACAGTGTACAAATTATATGTTGCTAGGCCATTTTCTCTAAGTTTAGTTGCTATATCGGGAGTTACATTCATATAAAAACACTCCCCCGCGCGCGCGCGTTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTGGCTTCCATCATTTGATTGAGGCAAAATAGAGTATTTTAGCTGCTCCCCTTATTGGTGGTTCAGGTGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATCACCCAACGGAAATTTTCGCATACC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //