Array 1 117093-117671 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUT01000015.1 Dickeya lacustris strain S29 NODE_9_length_136364_cov_114.675897, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117093 29 100.0 32 ............................. CTATGATTACAACAAAACTTCACGTAAAAATT 117154 29 100.0 32 ............................. ATACGGGAGAGCCAATTGCTCCGTATGCGGCG 117215 29 100.0 32 ............................. GTTTCTTGGGCCTACACCGTCACTCCAGGAAC 117276 29 100.0 32 ............................. ATGCAATTCGCCTAAATCCCTTGGCGATCGGT 117337 29 100.0 32 ............................. CAGGATAGATTCGGTACGGTAAATACTGAGGT 117398 29 100.0 32 ............................. CGCGTACCGGTACCGGTTTATAGGTGGCGTAA 117459 29 100.0 32 ............................. ATGTTGTTGCCGCGTTCGAAGCGGAGGGGCTT 117520 29 100.0 32 ............................. GCCGCGCCCGCGCACTGTGGCCCCATTTTCTG 117581 29 100.0 33 ............................. GCCAAAGACCTCCCGGGCAGGCTGGGGCGATAC 117643 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTAAACAGCGGTGAAAACTCGCTAAGTGTTGCAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCTGCTTGCTCAATTGCTTAAGGCGGTATTCCCATTTCAGCGCCGTTGAGCGATCGCCCGCTACACAGTGATACACCAGCGTCAGCGGCCCTCTCCCCCGCAAGGCCCGCGCGCCTTTACCGGCCTGATGCTGCGCCAGTCTACGCGCCACATCGGTAGTGATACCGGTGTAGAGCGCCCCGGCCTCGGTGCGGAGCAGATATAAGAACCATATGCTGTCGCTGCTGTTCACGTCATTTCCTTTTCGTGGTTTAGCGCCTATTTTACGGTGACAGGCCGATAAAGGCTGCCCGTTTGACGCCATTCATCGGTGGCGGCGGGTGAGGTACATTACGGTCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : ATCGACCGTGCTCGCCATATTGCCTCTTTTTTGTGATAATATTCACACCAATGGTGTTTTATGTGTTTATTGTTTCTTTTTTATGTGAATAAAAACACAAAAAAGAGTGGGCGATCGCGGTGAAATACCTTATCGCTGAAAAACCTTATCGCGCCCAATGTCTCGGCGTGACCAAAAAGCGGAGTGTTGTATGAGTGAACTGACCACAATGGCGCAGCGGGCGCTGGGGCTGATGGATTTAACCACCCTGAATGACGATGACACCGAAGAAAAGGTGATTGCGCTGTGTCGTCAGGCCAACAGCCCGGCAGGTAAAACGGCGGCGATTTGTATTTACCCGCGTTTTATCCCACTGGCACGAAAAGTGCTGCGCGAACAGGGTACGCCTGACGTTCGCATCGCTACCGTGACCAACTTTCCCCATGGCCGCGACGATATCGCCATTGCTCTGGCGGAAACCAATGCGGCTATCGCCTACGGCGCGGATGAAGTCGATGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60394-62130 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUT01000007.1 Dickeya lacustris strain S29 NODE_16_length_112556_cov_108.305410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60394 29 100.0 32 ............................. GACAGGTGTCCAAAGCGCTCGTTGGTGGATGG 60455 29 100.0 32 ............................. TGAGAAAGACATGGCTATTATACTCCCGGCAA 60516 29 100.0 32 ............................. GGCGAATGCCCGATCTGTGGTCGACGTGGAAA 60577 29 100.0 32 ............................. GTTAGCCGGTCGCTGTCATCGGACGTGCGCGA 60638 29 100.0 32 ............................. GCATGAGTCCCCAGCTCATCGAGCAGAACAAG 60699 29 100.0 32 ............................. GGTATTTCTATGCACTGTAAGAAGGGAGATAC 60760 29 100.0 32 ............................. CGTAGAACGGGAAAAACTGGCGGCTTATGACA 60821 29 100.0 32 ............................. CATGATCCAGTCATACATGGACGCCGAAAAAG 60882 29 100.0 32 ............................. CCCAGCATCCGCGCTGTCTTTTTTGATTCAGC 60943 29 100.0 32 ............................. CGCCTGTCTCATTGATGAAGCCACCCTGACCA 61004 29 100.0 32 ............................. ACCGATGATGAGGTTATCGCGATTGTAGAGAA 61065 29 100.0 32 ............................. TTCGGCCATATCCAGCAGTGCCGCAAGGCTTG 61126 29 100.0 32 ............................. TACCTTGAGCGGACTATATCGAGTTGAATAAT 61187 29 100.0 32 ............................. GGTGTTGTGCCTAATGTTTATGTTAAGACACT 61248 29 100.0 32 ............................. CCCACACCTCACCATCGGGATCAGTTGCTATA 61309 29 100.0 32 ............................. ATCCTCTCTTAACAGGTTACTCGTGATTGAGC 61370 29 100.0 32 ............................. CCGGACTTTATTTCCCGGTTCAAGTTTCTGGA 61431 29 100.0 32 ............................. AGTAATTATTTCTTTGCTCTGTATAGTGCCGG 61492 29 100.0 32 ............................. TTCAGGTCGATAATAACGGCAATAAATATGTC 61553 29 100.0 32 ............................. TCATTAGTACCCTCGCAATCTGGTATCTATTG 61614 29 100.0 32 ............................. AGTGCCTGATATAGTGTCTATATGTGATTATT 61675 29 100.0 32 ............................. GGCTATCGCTGATCGCCAAGAGGCCCGCAAGA 61736 29 100.0 32 ............................. GCATTGGAAACCCAGCGACTGCGGGCTCAGAT 61797 29 100.0 32 ............................. TTCAGAATTGTTTATGACGGCCCAGCCCTAGA 61858 29 100.0 32 ............................. ACGAAAAAATATTTTGGAGCAAAATTCTTGAT 61919 29 100.0 32 ............................. GGGATGTATGGCAACTATGACTCGCTCGTTTT 61980 29 100.0 33 ............................. TATGGCAGGCATATACATGTCGATCCGGTGGAA 62042 29 100.0 32 ............................. ATTGTGCCAATATAGATAACGTCCAGCTTGCC 62103 28 86.2 0 .....................-....AAA | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGTGAAATTGAACCGCCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACGCCCTTTGGCGACGCCGGGCACCGAGGCCATGGCGCATGAGCATGCTGGTGGTGGTAACAGAAAACGTGCCGCCGCGCTTGCGCGGCCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGGGTGTATGTAGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTCGAGTTCCAGACCTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGCCTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTACGGCCTTTAAAATACCTTATAAAACAGGTATCTACTTTTAGA # Right flank : AGAGAAACCCGATGACGGGCGGTACGCGTCATCGGGTTTTTGCTTATGGAACTGCGTTACGCAGGCTGATGATTAAAATGAATGCCAGTCATCTTCGCTGCTTTTGGTTTTGCGCGAGGAGGCGGCGGGTTTTAAGGCCAGTGTTTTCGCCGCCGCCGGTTTTGCCGGGGTGCTGGCGAGCAGCGGCTGGTTGCTGGATGCACGGTACGCGCTCTGTCCGGTTTGTTGCAGATGAAACAAGCTCACTACCTGTTTTAATTGCTCGGCCTGTTGCTGTAAGGCTTGGGTGGCATCGGTGCCTTCTCGCACCAGCGAGGCGTTTTGCAACGTGGTTTGTTCCATCTTATTGATGGCCATGTTGACCTGTTCAATGCCGAGCGACTGCTCCTGACTGGCGACGCTGATTTCACCCACCAGCTCGCTGACTTTGCGCACGCCATCGACAATACCCTGAATGGAAACCCCGGCTTTTTCCACCAGACGATTGCCTGCGTCAACGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 153302-152250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUT01000054.1 Dickeya lacustris strain S29 NODE_1_length_460991_cov_101.540072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153301 28 100.0 32 ............................ GTCTGGAATGAGGTAATAATACATTTCTACTC 153241 28 100.0 32 ............................ ACGACCTGACGCCGGATTTCCGGCGATTTCAA 153181 28 100.0 32 ............................ GACAGAAACCTAACTGGAATCGTTGGGGACTG 153121 28 100.0 32 ............................ TGTTTGAGGCGGCCAGAGATTAGCGCCCGTGG 153061 28 100.0 32 ............................ GTAGACAGGCACGGCAGGCACATACTTCAGGG 153001 28 100.0 32 ............................ ATCGATACCATTACACCATCCCCCCGAACCAG 152941 28 100.0 32 ............................ AGCTTGCTGGGGATAAACCAGAGTAAGATGGT 152881 28 100.0 32 ............................ AAAGGGCGACATGAATGGTTAGCGCTATTCTC 152821 28 100.0 32 ............................ CGGCTGCAGTGGAGCGTTGCCCTTGCTTGTTG 152761 28 100.0 32 ............................ GGCGTGAGAGCGCAGGAATCAACGAAGAGAGC 152701 28 100.0 32 ............................ AGCATTGATTACGATTGGCTGGGCTACGGGAA 152641 28 92.9 32 ...........AG............... GGACACCTGCGCATCGCCGGACACCCGCGCAT 152581 28 92.9 32 ...........AG............... GAACAGCGGTTATGACGCTGTAACCCTGGCCA 152521 28 92.9 32 ...........C.C.............. GCCTTCTGGCACTCGACAAAAGCGTTTCACTT 152461 28 92.9 32 ...........C.C.............. AAGCAATCTCACCCTCGCTGGGGCCGATAAAT 152401 28 100.0 32 ............................ AGCCCTAGAAGGTGACGGCTCACAGGCTTGGC 152341 28 96.4 32 .........................G.. GCTGGCTGTGGCAGCGCATTAATGCTGCCAAC 152281 28 82.1 0 ...........C.C...........GGT | C,G,CG [152252,152254,152257] ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.2 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CAGGCATTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTACCGGTGCCAGCGGGGGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCGCCGGTGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATTTGACCGCCAGAAAAAAGGGTTTTTCCGGGAAAATGGCAATTTTTCTTTAACAATCAGGTGATAAGCGATTATTCGCTACA # Right flank : TTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAATCACCCTCCGTCCCCACATACATTCGACAAGCACATTCGCCAGCAGCACCCCGGCTGTTTACCAACAGCCCGAAAACGTTACTCTACCGTCAACACTGCTACCGCCTGTTTGCGCTGTTTGATGGCGTAACCCGCCCCCAGAGCCAGTAGCCAGAAGGGAATAAGCCAGACGGAGATTTGGATGCCCGGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 162270-164689 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUT01000054.1 Dickeya lacustris strain S29 NODE_1_length_460991_cov_101.540072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162270 28 100.0 32 ............................ GAACGGCAAAGAACCATTTTGAGGAATAATAA 162330 28 100.0 32 ............................ GATGACCGAGATGCGCAAAGCTGCGCTCATCT 162390 28 100.0 32 ............................ TCTCTTTCCACCATATGTAAAAATGGAAATAC 162450 28 100.0 32 ............................ AGTCGCTCGCGCTCGGCACTTGTGAGGGGTGG 162510 28 100.0 32 ............................ AGCGGTAGTTTCCAATGTCACTGCTTGCTCAA 162570 28 100.0 32 ............................ TGTAGTGCCGGATGTTGGCGATCTGCCGGAGC 162630 28 100.0 32 ............................ CTTAAATCACAGGGATTCATGTCTGGCATTCA 162690 28 100.0 32 ............................ TAAACCCGATGGCTGTTAAAGCCCATCTCTAC 162750 28 100.0 32 ............................ GCTTACAATCTGGGGCGTCTTAACTGGAACGA 162810 28 100.0 32 ............................ AAAGCGGGGAACGTTGTAAGAATATTGCTGTT 162870 28 100.0 32 ............................ AACCAGCTATCAGAGCTGGGATGTGAATCCGA 162930 28 100.0 32 ............................ TTGGATGGCGAACAGTTTGCGCAGTTGAGCGT 162990 28 100.0 32 ............................ ATCGCACCGGGGCTTGCGCCCATCGACGGTCT 163050 28 100.0 32 ............................ CAACGTATTCCGATGAAAATACGGGGAGATAT 163110 28 100.0 32 ............................ TGCATGCGGATACCAAACGGAGCAATAGCGGT 163170 28 100.0 32 ............................ ATCTAAAGCAGAATTCAAATCAGAAATGAAAC 163230 28 100.0 32 ............................ ACTGCGGAAATTGCCGCAGCGTTGGGGCGGGT 163290 28 100.0 32 ............................ ATCAGGTAGCTGGTATCCGGCTACCTTTTCTT 163350 28 100.0 32 ............................ GACTTAAAATCTCATGCGCCACGTTGATTCCT 163410 28 100.0 32 ............................ TAACGGAATCGCATATGGCCGAAAAAACCCCC 163470 28 100.0 32 ............................ TGATGGATGAAGGCTTTGTTCATTGGACGCTG 163530 28 100.0 32 ............................ TATCACAATCAGCTTGGGCGCGGTGGCTACTT 163590 28 100.0 32 ............................ TGAATACCCAGGAACAGAGCGCGAGCGGCTGG 163650 28 100.0 32 ............................ TGCGCCTGGAGCGGAAAATCATGTTCCTCCAC 163710 28 100.0 32 ............................ AGCGGGTTTTTCTTAAACATGATTGTCAGGTA 163770 28 100.0 32 ............................ AGTTGACGCTGAGTGGCCACAACGTTGCTAAT 163830 28 100.0 32 ............................ AGCAAAGCGGTAATCATCGGCCAGCACTCTGC 163890 28 100.0 32 ............................ CCCAACAAAGGGGGCGCAGCGATGGATGCGGC 163950 28 100.0 32 ............................ TTGCTGCGCTACGTCCTCTAGCGTTTTTCCGC 164010 28 100.0 32 ............................ AGGTAGGCCATAAACAGCCACTCGGTTAGCTG 164070 28 100.0 32 ............................ TTACTCGTTCGGGTCTTTTGCGTAAGTGTCGA 164130 28 100.0 32 ............................ AGGCGACCGGCGGCCGATACACCCGTGACGGT 164190 28 92.9 33 ...........AG............... AGTGTGTAGTTACCGGCATTCAGCCCATAAAAC 164251 28 92.9 22 ...........AG............... GAAGTTATCCGTGTTATTTGAC Deletion [164301] 164301 28 92.9 32 ...........AG............... GACATCAGCGAGTGATACTCACGCATTTCACC 164361 28 92.9 32 ...........AG............... TGAGCGGCTGGAGCATTTGTGAGTATTTGTTG 164421 28 92.9 32 ...........AG............... ACGCAGGATTTCGATAATTTCTTGTGCGTTCA 164481 28 100.0 32 ............................ AGTCTGCATCGCTGATAATGAAATCGGCTTTG 164541 28 92.9 32 ...........AG............... ACACGGTATCGACGCAATCATAGCCTGCGTCG 164601 28 92.9 32 ...........AG............... TGTGGTGCGGGTGGATGTTTGCCAGCATGTTC 164661 27 82.1 0 ...........C.C.........-..CG | GC [164680] ========== ====== ====== ====== ============================ ================================= ================== 41 28 98.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACGGTTTCTCTGTGGTGGTGATAAAGCAACCCCACCCGCGTAATAACACGCAGGCTAATAATTGATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTGCACACCCTTTTTTTTCGCTGCTATTTTCGATACTGAAAAATCAATCAGTTACCGATAGTCGAAAAAAAAGGGTCTGACAGCGAAAATCGCCAATTGCGGGCAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACTGCGAAGGCGAACGCCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCTGCTAAGAAACAATGCGGTTAATCACGCACGAAACGCTTCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTGTCACCGCTTCAGGGATATCCGGTCAAAACGACGTCCAATCACTATTGCTACCCGCTATGGCGGCCCGCTTTTCCGGCAACGCCGGAGATAGCGCCACTGGCTGGTGGGCTGATGGCGTTGCGCCGCTGTTGCCCTGTGGCGGCAGACGAAATGCGCTGACGGCTTCGGCCAGCAGAGAGGCTTGCGACTGTAATGACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //