Array 1 154431-154825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJRU010000008.1 Serratia marcescens strain SMM_61 NODE_8_length_277440_cov_20.8706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154431 29 93.1 32 ............AG............... CGATCTGGATAATGTCAAGGATGGGTTGGGAA 154492 29 100.0 32 ............................. TAGTCTTCAGCAGTTGCCTTACCGGCCGAGGT 154553 29 96.6 32 .........A................... TTCGACCAGCTATCGCGCTGCGAGGTTGATCC 154614 29 100.0 32 ............................. CAGTTCGAATTTGCCCTCAGTGTTACAAACAA 154675 29 100.0 32 ............................. ACCGTGCTGTAACCAGGAACGGGCACCGGATC 154736 29 96.6 32 .............T............... AATCCTGCCACGGTCAGCTTGCTTGCCAATGC 154797 29 89.7 0 ............TT............T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCTGGTGACAGAATGTCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACTATCTGGCCGCTGCAGTCGATGCCGTCCTGGGTGCGCGCCATTTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGTGTCAACCAGATGGGGCTGTCGCTGAATGAGGTGTGGGGCGACGTCGCCATGATGCTGGTACTCGGCGTGGTCTATACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGAATGTTCAGGAAGCGGCGGGCGTAGGGGATGTATATTATTGTTTTAAAATAAGAATCCGGTGATTTGGCTTTATTGCAATGAATGGTTTTTTTATTTGATAAATTTCAAAGGGTTATGTGGTTTCCCGGATGCTTAAATCGCGGTGAAATTTCGTGGATGTTGAAAATTCATTTAATTCAAGTAGATATATTTAGA # Right flank : GTCTTTTGTTGGCGGGGTACGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGTTGAATGAGGTGTGGGGCGACGTGGTGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCGTAAACAATGACTCTGCGTTCAGCCTTGCGCGGCGGCGGTAGACATTGCGCCAACCAGAGCGGCGATCTGCGCGATCTCCTGTGGTGATAGCGCATTGTCTCCCAGCCTTCGCAGCAACGCCTCGCGCGCGACGGCAAAGGCCAGCGCTTGGCCGAGAATGGCGTGCGCGCGCAGGATATTCTCCCGCAGTTCCGGTTGGGTGCCGCGGATCGCCGCGACCAGCTCGCTCACGGCCTGATGCAGCGGTAAGAATAAACGGGCATGCAGAGTGTCGAAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160706-162636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJRU010000008.1 Serratia marcescens strain SMM_61 NODE_8_length_277440_cov_20.8706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160706 28 100.0 32 ............................ GTTAGCCTTGAGCACAGCGACAACGGAACTAG 160766 28 100.0 32 ............................ AGCTCGGCAAACGTTGGGGTTGCTGCGGCCAG 160826 28 100.0 32 ............................ TTGATAGCGTTGGCAGTGTCCCACTTTTTGGC 160886 28 100.0 32 ............................ TGCCGGGCTGTCTCGGTACGCCCCAGGTAATC 160946 28 100.0 32 ............................ AGACCAAATGGAATATTGCTGCGCAGCGCTGG 161006 28 100.0 32 ............................ GATCCCCTGCGCCGCGCCTCGCCATTGCTCCG 161066 28 100.0 32 ............................ ACGATGGATCAGGAACGCTACCGCATCAACAA 161126 28 100.0 32 ............................ AACAACGGTGCTGGTTGGCTACGCGCCAGACA 161186 28 100.0 32 ............................ TCAGCGTAGCCACCAGGCAGACCAGTGATGAT 161246 28 100.0 32 ............................ ATAGGGTCTCACCGGCTACGCCGATAATTTTC 161306 28 100.0 32 ............................ CACGTAATCGAGAAGATTCTCGGCCACCTGAT 161366 28 100.0 32 ............................ ATACCGAAATCCGCCCAGCGTTGACACACCAA 161426 28 100.0 32 ............................ GTTATTGCTGAATGCCTTGGTAAACTTGGCGT 161486 28 100.0 32 ............................ GATCTCAAGCGTGTTGATAGCGGCGCGATCTC 161546 28 100.0 32 ............................ GACACCGGGCGGCAACTCGGTGACATGATCAA 161606 28 100.0 32 ............................ TACAGGCGTACCAGCCAACCCTGCAATCGTCC 161666 28 100.0 32 ............................ AGCGAGCACTGCCGGCAGGAGGTTTTACCGTC 161726 28 100.0 32 ............................ AGGGGGATATTGTTTCTGAAGAAATTCACATC 161786 28 100.0 32 ............................ AATGCACAGGATCCGACATCAGCGCTGAACTG 161846 28 100.0 32 ............................ AGTTCCATCGACTTGAGAAATTCGCGCGTGCG 161906 28 100.0 32 ............................ ATCATTCGGAAACATGTCGCGTATAGGCTCTC 161966 28 100.0 32 ............................ AAGTTTCAGGAGCTGATCGAAACCTCCGACGA 162026 28 100.0 32 ............................ TTGAACGTGTCCAGCTCGCCGCCGCTGTCCGG 162086 28 100.0 32 ............................ AGCCGCTTTCCTGCTGGCAGGTGCTGGCGCAG 162146 28 100.0 32 ............................ CACGGCTTTGAGTTCTGAACCTGCGGGCTGTC 162206 28 100.0 32 ............................ CATGAGCGACCCGGCGGCGACCGCACAACGGC 162266 28 85.7 12 .......................TC.GG GCTAAGCGGAAC Deletion [162306] 162306 28 100.0 32 ............................ TGGAAGATTTCATTGGCACTAATCATCACCTC 162366 28 100.0 32 ............................ GGTAAATTTGCGCAGTGTTGCAATAAGCGTTA 162426 28 100.0 32 ............................ TGATTTGAGAGAACACCATGAAAGACGCAAAA 162486 28 96.4 32 .............T.............. TGGGACAGTCCGCTGAACCCGGTGCGCCCTCT 162546 28 96.4 32 ..T......................... GACGATTACGATTTCGAGAAGCCCAAGGCCGA 162606 28 96.4 0 ....................A....... | A,A,G [162626,162629,162632] ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.2 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACGGCCGCTTCGGCTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACCACCGGCAACAAATCCTCCAATGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTCAAAACTCCAGTTTCACCAGCTGTATATAACTGGCTATTGGGCTAATGCGATTGGTGATAATACCAATCTGGGTGCCCGCCAATTTTCTTTCATAGATTTGAAAGCGACTCTTTTCTCCAGTCTTACTTGCGAACCCTTTTTTGAGCGGTCAATTTAACTTATTGATTTTTTATCATAAGTCTTTAAGTGATTTTAAAAAGGTTTTTTGACACAACAGATAGATTTTCTTTAGACAATCAGCTGATTAGCGCTAATCTTCAACA # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCTGGCATTGATCTGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAGCAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGGACCTCAGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGAGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 171462-174491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJRU010000008.1 Serratia marcescens strain SMM_61 NODE_8_length_277440_cov_20.8706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171462 28 100.0 32 ............................ ATGACTTCTGCGACTGACACGGCTATTCCGTT 171522 28 100.0 32 ............................ TTCAGCAGCTTCGGCAGCTGGCGCAACATCTT 171582 28 100.0 32 ............................ ACCAACTGCGCCAGGCGCGCCCAGGCGGTCTG 171642 28 100.0 32 ............................ TTCGGCCAACTCTGCCGCCGTGGATGGGCCAC 171702 28 100.0 32 ............................ TTGCCGTTCTTGGCGCGCTGGCGCATCAACCA 171762 28 100.0 32 ............................ TTCACCCCGGTGAACGGTGTGCGGTTCAGTGG 171822 28 100.0 32 ............................ GATTTTTTGAAGGGTGTCCACTAAGAAAAGAA 171882 28 100.0 32 ............................ GGCACGCGCCCGCAGAACTCGCAGCCCTCTTC 171942 28 100.0 32 ............................ GTCCGGTCAGTCAACGCCATTGGACCGGATGT 172002 28 100.0 32 ............................ AGGAATACTGATCCCGGCCACGCCGGAGACCA 172062 28 100.0 32 ............................ TTGCCAACATATTTGGCGTTGCCCTGCCTACC 172122 28 100.0 32 ............................ GCTCACGCTGTAATAGAACTGCGAATCCCATT 172182 28 100.0 32 ............................ TGGGGGAAGGCAACGGCACCACTGATGATGGC 172242 28 100.0 32 ............................ AATTAGCGAATTGGCAAAGAGGTTTAATGTTA 172302 28 100.0 32 ............................ GATGCGCAAGTGGCCGCAGCCAATGTCGTCAA 172362 28 100.0 32 ............................ ATTAGCCAAAGGCATCGGCAAAGACTACCGCA 172422 28 100.0 32 ............................ AAGCCATCGAAGACTCAATTGTTGACCTTGAA 172482 28 100.0 32 ............................ TCTCGATTACTGACCGGCGATAACCAGGCCAA 172542 28 100.0 32 ............................ GAGCGCCATCGATAATGCATCTGCTGCATTAC 172602 28 100.0 32 ............................ ATGGATCCTCACCACCGCTTTCTTGATGTGCT 172662 28 100.0 32 ............................ TTGCGATAATGGCGATAGAGCGCAACTCTCCG 172722 28 100.0 32 ............................ GCCGGGAAGAATTGGCGCACCAGTTGCGACAC 172782 28 100.0 33 ............................ CCTAACCGAGCGCTCGAATTTCTGGACGGCTCC 172843 28 100.0 32 ............................ AAAGACGCGGCGCTGGTGGCGATGAAACAGGC 172903 28 100.0 32 ............................ ATCTCGAACTGAAAGCCGCGGCAGGTTAGGTC 172963 28 100.0 32 ............................ ATCGTATCGCGCCAGCGCTCAACGCCGCCCGC 173023 28 100.0 32 ............................ GAAGTGACCAACCAGATCACCACCGGTGATGT 173083 28 100.0 32 ............................ TCCGGCGTGCAGTACGCGCTTACCCGGTTGAG 173143 28 100.0 32 ............................ CTGGTGGCGGCCGGTGAAAGCTCCCGTTTTGC 173203 28 100.0 32 ............................ AGGCGCTGCGTATGCAGACTATTGGCGATGCC 173263 28 100.0 32 ............................ AATGTCGTATTGAGCGAAGTCAGTCTCACCTA 173323 28 100.0 32 ............................ GGTGTGCGGTAGAAAACCTCGCGGCATTTGTT 173383 28 100.0 32 ............................ ATCGGGATAAAAAATCCATCCTGATCTGTGTA 173443 28 100.0 32 ............................ GACCAGTAGAGGCCCGCGTAGTCGACATACCA 173503 28 100.0 33 ............................ CGCGTTGATGTCCGCCTTGTCGGCAATGTCCAT 173564 28 100.0 32 ............................ AGCGTCTTTTGCTTCAGCAAACAGCTCACTCA 173624 28 100.0 32 ............................ TTCTGAGCCACACTTTCAGCTGCTGTCGCGCT 173684 28 100.0 32 ............................ ATTATAACGCGCGCCGGCCAAAGCCAGCCCAC 173744 28 100.0 33 ............................ TTGTCACGGCGGATTACCAGGCCGTTTAACTTT 173805 28 100.0 32 ............................ TGCTGCGCCACCACGGAGACGAAAATGGCGCA 173865 28 100.0 32 ............................ TCGATGTCCGCTGATTTTAAACAGGCATTCTC 173925 28 100.0 32 ............................ AGCTCGAGCTCCATAAACAGCGAGCCGAGAAA 173985 28 100.0 32 ............................ GTTGGCAAAACCGTTTTGGTACGCGCGGCCAT 174045 28 100.0 32 ............................ AGAACACAACATCACCGGAAAAACACGTCAGG 174105 28 100.0 32 ............................ TGCCCAGGGTGGCTATCACGACGCCCAATCGT 174165 28 100.0 32 ............................ TCCAGGGCATCTAGGAATGGCAGATCTGTTAA 174225 28 100.0 32 ............................ AGAAACCATGTCGGTGGTCGTCGTCGCCGTTT 174285 28 100.0 32 ............................ CTGATCGTCGATCTCGGCAATGCGTTTGTAAG 174345 28 100.0 32 ............................ CGCAGGCCGAGGCGGACGCAGCAGCAGACGCC 174405 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 174465 27 85.7 0 ............CC......-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCGCTGGGGGGATTCGACTGGATTAAAGGGTTGCGGGACTATGCCAACGTGTCGCCCATCCAGACAGTGCCTGCGGAGACGGCGTTTCGTACGGTTAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGAATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCTCGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCATTTATTGCCTTGAAAAGTCTCTCCACCGGACAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTTTATGGGTTAAGCGTGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTAAAAAATTAGGGGTAAACCAAGGTATTTACCTGTTGTTCTTTAATAATCAGCTTGTTAGTGATTTTTTCGTTCA # Right flank : AAGGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTACCGCGCAGTGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGTTCGGTAAACGCAGCATATAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGTTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCTGCCACAATCCCACCCCCGGCCGCCGGTGCTTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //