Array 1 107756-110968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFP01000016.1 Bifidobacterium animalis subsp. lactis ATCC 27673 A27673_016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 107756 29 100.0 32 ............................. ATCTCTCGGCAATGTCGTAATTAGATATCAGT 107817 29 100.0 32 ............................. TATCGTGACCCCATCACGCTCGGCATGATGCA 107878 29 100.0 33 ............................. ATGCCGTCCGTGTCCATCGTGTCATACGTGTAC 107940 29 100.0 32 ............................. CCGCAATGAAACTGCTACGGCAAATCGGAGAA 108001 29 100.0 32 ............................. CGCTGACCGCATAATCCCCGCTTTCGTCTATG 108062 29 100.0 32 ............................. TCACTTCAATAATCGAAAACGTTTGTGAAATA 108123 29 100.0 32 ............................. ACGTCGCTTGGCACGCTCGCCGTGTCCAAGGA 108184 29 100.0 32 ............................. GCGTCGTCGCCCAATGTGACGCTGCCGCGTGT 108245 29 100.0 32 ............................. TTCTGCGTCGCCAAGAACTGCAAGTCTTCGGC 108306 29 100.0 32 ............................. GCGTATGCCCAGGCCAATGAGTCGGCGGCGTT 108367 29 100.0 33 ............................. GCAGCGCCCACTCGTCGATCTGCGTCTCCCACG 108429 29 100.0 32 ............................. TGCCCGAGGCGGCCACCGGCACGGTATGGTCC 108490 29 100.0 32 ............................. GGGCCATTATCCGCGTAATGCGATGGGTGATT 108551 29 100.0 32 ............................. AAAGTAAGCGAGGGAATAACATACATCAAAAA 108612 29 100.0 32 ............................. TGAGCGTGGACTGGGCGGATTATTTGTCCGGC 108673 29 100.0 32 ............................. GCGTCCAGTGCGCGACGGAACATGCCGACGAA 108734 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 108795 29 100.0 32 ............................. ATTTGGAACTTTTTCAAATGCTTGTATCGACT 108856 29 100.0 32 ............................. GTGTTCGAGAAGGGGCCTGCGGTCTCGGTCAT 108917 29 100.0 32 ............................. TGACCGGGTTCGCCGAACTGCCGCACACGCCG 108978 29 100.0 33 ............................. GAGACAGACACCGAACTGATACTCCCAGTGGGC 109040 29 100.0 32 ............................. GCCAACACCTCAAAGAATACGTCATCGCACAC 109101 29 100.0 32 ............................. AACATTGGAGAGAAGCCAAGCAAGCCGAAACA 109162 29 96.6 32 ............................A CACGGCCACACGCATCGATTTCACGCGTGGGC 109223 29 100.0 32 ............................. GCCAGCATGGTCGCCCAGTCCGTGCCATGCCC 109284 29 100.0 32 ............................. ATCTTCTTGACGTCCCCAGTACCGGCATAATC 109345 29 100.0 34 ............................. GCGTTGCCTTCGGCTGCGGTGATGTAGTAGTGCG 109408 29 100.0 32 ............................. TGGTCGGAGAGGATCTGGTCGGCGTCGGCGGC 109469 29 100.0 32 ............................. TGCCAGCCCGTCAAACGAAACGGCCGATTCAA 109530 29 100.0 32 ............................. GTGATCATCTCGTTCCAGATCTGGTTCTTCAC 109591 29 100.0 33 ............................. TCCACATGTGCGCCTCCTCGTGGTGCGGTCGCG 109653 29 100.0 32 ............................. TCGGCCTGCGAGTTCGCCGGCGCGCTCTGGGA 109714 29 100.0 32 ............................. GTCGACACCACCGGAAGCCAGCTGACCATGCT 109775 29 100.0 32 ............................. AACGGGTTGACCATAGGCGACCTGACGAACAC 109836 29 96.6 35 ............................A ACCAAACAAAACCAAACAAAACAACAAACAACAAA 109900 29 100.0 32 ............................. AATTTTGGTAAATTGGTTTTGGTTATCCCCTA 109961 29 100.0 32 ............................. AGTTGACGTTAACACCGATGAGGCCAACCAGA 110022 29 100.0 32 ............................. GCCGCTGTGATTGCCGCGCTTCGCGATGCGTC 110083 29 100.0 32 ............................. AGCATGTCGTAGCTGACCGGCTGAACCTGTCC 110144 29 100.0 32 ............................. GTGTTGCCGATGGCGTATTGCGCATAGTCCTC 110205 29 100.0 33 ............................. TATTGGGACAATCAGGAGGCACCGACATGGCAG 110267 29 100.0 32 ............................. CGGCCGCATCCGGCATGCAGCCGATCCCGACT 110328 29 100.0 32 ............................. GCGACGGCGCGCACGCCTCAAGTCGCAGCAGC 110389 29 96.6 33 ..........................T.. AAGGCAAACCAATTACTGGGACAATCATCAGGA 110451 29 100.0 32 ............................. GTGGCGGTGAAACGGTCGCCTTCCTTCGGCTC 110512 29 93.1 32 ..........C.................T TGCAGGTGTGATGGATTGACGCATAGGCTGTT 110573 29 96.6 32 ..........C.................. GCCGAACCGCCCTTGCGGGTCTGCATGCTTTG 110634 29 96.6 32 ..........C.................. TCAAGATTGGCCCGATCACCACCACCCACATA 110695 29 96.6 32 ..........C.................. AGGTTCGTGTTGCCGTCCGGATTGTCCTTGAT 110756 29 96.6 32 ..........C.................. TGTCATTGGGCAAGGGGCCGGACGGCAAGTAC 110817 29 96.6 33 ..........C.................. GGGTGCGCAGCATCGTCGCCGTCATCGTCACCA 110879 29 96.6 32 ..........C.................. GCGTTGCCCTCGGCGGCGGTGATATAGTAGTG 110940 29 96.6 0 ..........C.................. | ========== ====== ====== ====== ============================= =================================== ================== 53 29 99.2 32 GTGTTCCCCGTAAGCGCGGGGATGATCCC # Left flank : CACTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGGTATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : CGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATAGTGTTCCCCGCAAGCGCGGGGATGATCCCCAGCTCGCCCGCATGGAGCAGTTCAGGACCTAGTGTTCCCCGCAAGCGCGGGGATGATCCCAGCTTGTAGTGCGAGACGTGGTCGGCGTCCGTGTGTTCCCCGCAAGCGCGGGGATGATCCCTCACCGGCGGCACCCCGCCTGCCCAAGCACAGGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111249-112927 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFP01000016.1 Bifidobacterium animalis subsp. lactis ATCC 27673 A27673_016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111249 29 100.0 32 ............................. CAGCTCGCCCGCATGGAGCAGTTCAGGACCTA 111310 29 100.0 32 ............................. AGCTTGTAGTGCGAGACGTGGTCGGCGTCCGT 111371 29 100.0 33 ............................. TCACCGGCGGCACCCCGCCTGCCCAAGCACAGG 111433 29 100.0 32 ............................. GGGCCGTGCACCTCGTATACGGGATATGAGCG 111494 29 100.0 32 ............................. GGAGGTGCATGAATTGAACGCAGAATAACGAC 111555 29 100.0 32 ............................. GTGTACCGCCAGTCGTATCTCAGATGCCGCCA 111616 29 100.0 32 ............................. GCCTCGACCGCATTGGCCAACGACAGCGCCAC 111677 29 100.0 32 ............................. TACCATGACCCCATCACGCTCGGCATGATGCA 111738 29 100.0 33 ............................. AAGGCCGACATCGCCCTCACCCCCGGTGTCTAC 111800 29 100.0 32 ............................. ACCGACCCGAACCTGTGGGCACCCGGCAAGAC 111861 29 100.0 32 ............................. AGATCCTTGGACAGGTTCGGGGTCTGGTTCGG 111922 29 100.0 32 ............................. GCAGACATCCGGTCGAAAAGAATCCCGGAAGT 111983 29 100.0 32 ............................. CTGACAGCGGCGGACCTCAGGGACCAACTCCA 112044 29 100.0 32 ............................. GTGGAAGGAACATATGAACAGCATCCGAACCT 112105 29 100.0 32 ............................. TGCACAACGAAACCAACACCGAACTGATACTT 112166 29 100.0 32 ............................. ACCCACGGCGGCAGTGACGATAACGGATACTG 112227 29 100.0 32 ............................. AGGTAGGTGCCCGGCTTGAGTTCGATGACGCC 112288 29 100.0 32 ............................. GTGGGCCAAACGTGGGCGATGAGGGACTCGAA 112349 29 100.0 32 ............................. GCTGGGTGACGAGCGACGTGCTGCCGTCCATC 112410 29 100.0 32 ............................. AGGAGCGTGACCGTGTACTTGCCGTCATCACC 112471 29 93.1 32 ........T.................T.. TACACCGAGATAACGCAGGCCGCCGGCAATTT 112532 29 93.1 32 ...........G....T............ CCGGCCGCCCCGGAGGTGGCGCGGAAGATACG 112593 29 93.1 32 ......T.........T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 112654 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 112715 29 96.6 32 ................T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 112776 29 89.7 32 .......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 112837 29 89.7 32 A......G......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG A [112843] 112899 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.8 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CCTTGATGTGTTCCCCGCAAGCGCGGGGATGATCCCTGTCATTGGGCAAGGGGCCGGACGGCAAGTACGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGTGCGCAGCATCGTCGCCGTCATCGTCACCAGTGTTCCCCGCAAGCGCGGGGATGATCCCGCGTTGCCCTCGGCGGCGGTGATATAGTAGTGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATA # Right flank : CTGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGACTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTACTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCAGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCAAGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAATGCTCTGTACTATCTAGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //