Array 1 26570-27206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCE01000028.1 Nocardia uniformis NBRC 13702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26570 28 100.0 33 ............................ CCCCACACTGGTCAGCTGCCCAGGATGTGGCGC 26631 28 100.0 33 ............................ CAACCATCTGCGGGTGGGCCTATTCGTGCAGCG 26692 28 100.0 33 ............................ CGCAGATTGACCCTGAAACGCGAAAAGAGCCCC 26753 28 100.0 33 ............................ CTCGAGCGTGCAGACGATCCAGCTGACCGTCCC 26814 28 100.0 33 ............................ CCTGGGGGTCTGGTTATTCCTTGGGCAGGCCCG 26875 28 100.0 33 ............................ CCACGATGCGTTTACTCATAGAACCTCCGTAAA 26936 28 100.0 33 ............................ TCGACAGTGTGGCACCGACCTCGAGATGATCCG 26997 28 100.0 33 ............................ CACCCTGACGACGTGGGCACGTGCTGTAGCTGA 27058 28 100.0 33 ............................ CGGCACCCAGCTTCTTCGGGGGCAAGTCGTACT 27119 28 100.0 33 ............................ CATCGGGCACGATGGGCTGGACGGAATGCTCAG 27180 27 96.4 0 ...............-............ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TCAGTTTAGTGAGGCGACCGGCAGTCGCCTCGGCGAACAGGTACTCGGCACTATGCCGCACAAGAGCCACTCGCCACCCCTACAGACGCATGCGGAAGTCAACATGCGGGTAGGGGCAGCAACGAAGCGGTGTTCGGTGCCCGGCGGGCCGCGGTGATGACATTACTCGTACGGCTAATGACCGGAACCATGCGCCACTGGAGCATCCAGCGCCAGAAGCGAATTCACACAACGTGCATATGTCCCCAATCACCATGCGCGTCAATCCAACCCGCACCGCAGGCTGAACGCCCTCTACCACGGCGGCACAGCGTTCGAGCGTGCGCAGCGACTGACCTGAGTGGTCCCGGGGTTATGGCGTTGCCTCAGATTTCTGGCCGTCTACCTGCGACACTATGGTCAACCAGATCAGCACGCTAATCGTGCCGACAGAGATGATGTGAGTGATGAAAGTGAATGAAAAACCGGGAGATTCGCAGGAAACATGCAGGTGAAGAAGT # Right flank : CGCCACTGCGCCCGTTCAGGTCTCGCCTTCCGACATGCTCCCCACGTGTGCGGGGAGCACAACATCTCCACTTGCTCACTGGCGTCCGGGAAGGGCTCAGCCCCGCGCGTGCGGGGAGCACATCACCGCATCCGCCGACCAGATCAGGATGGCGGGCTCAGCCCCGCGCGTGCGGGGAGCACACTTCCTGAACAGTGTCTTCCTGCTCGAACATACTGTTTTCATTCACATTCCATCGTTCATGGCGTAGTTGTTGCCGAAGTGAACGGCTTCTCAGTGTCTGCTGGCACTTCTCCATCCTGCACACCGTTGCCCGGATTGCGTCGTCTGTATCGGTGGCAAGTCTGCACAACGACTCGGTGGTGGTGTCACTATCGGCTACCGGTGTTGGACCCTTCGTTGCGAGTGGGCAACGGTCACGCCTTCTCCCTCTGCTAGCGTTTCGGCGTTGGGACAACAGTGCTCCCGGCACCATGCCGGGATGAGCCGAGCTCGACGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37469-38108 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCE01000028.1 Nocardia uniformis NBRC 13702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37469 28 100.0 33 ............................ CTGGAAATCCTCCGGATGGGTCACCGAAGAAAA 37530 28 100.0 33 ............................ CGCCGCGACTAGGTTGTCTTGTACTTGGTTGGT 37591 28 100.0 33 ............................ CGCCAGATCCGCACGCCGCAAATCCCGGTCGGT 37652 28 100.0 33 ............................ CACCCCGACTGGATTGTCGACACCAGCGGAACT 37713 28 100.0 33 ............................ CTGCGACATCACCGGACGACTGCAGATCACGGG 37774 28 100.0 33 ............................ CGGCGGCGTGACCCCGCACCTCCACCTGGAAGT 37835 28 100.0 33 ............................ CTCCCATTCCACGTACTCGCCGTTGAAGTAGGT 37896 28 96.4 33 ......G..................... CGATGAGCTGCTCGCCGCGACCCTGCGCGGCTC CA [37914] 37959 28 100.0 32 ............................ CGGTCGGTTCGCGCTGTGGCTTGCCCGCCGTC 38019 28 92.9 32 .....................C.....T CACCTTCGACGGTCCGGACGAGGAGGGGTGGT T,T [38022,38024] 38081 27 82.1 0 ..T.............-A..CC...... | C [38091] ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : GGGACACCGACGTCGTCGAACTGTGGGACCGCGCAGGCAACGTCGCCGGCGGAATCTCCTACGACGACGAGGAAGTCCCGTGGTAGTACTCGTCCTCAGCGCCTGCCCAGCAGGTCTGCGAGGTCACCTGACCCGCTGGCTCCTCGAAATCAGCCCAGGTGTGTTCGTCGGCGTTCTGACCGCGCGGGTCCGCGACCTCGCCTGGCAACGCGTCGTCGAACTGTCGAAAGACGGCCGCGCCATCATGATCTACTCGACCCGTTCCGAACAGGGCCTCGCCTTCAAAGTGCACCGCCACGAATGGGAGCCTGTCGATATCGACGGCCTCCACCTCATGCGCCGCCCTCACACGGGTCGTACGAAACCCACCGGCCCGCGCGCCGGGTGGAGCAAAGTTAGTAGATACCGGAAGGCCGCGCGGCGTCGCAGTAGCACCGCCGAGCTCGACGAAAGTGAATGAGAATTGGCGCTATCGTGAGAGAACACGCTGGTCATGAAGT # Right flank : CACTGGACAACGGCTGCAGCGACCTGCGCCTCAACAGTTCAAAGACATTGCATTGCGCAAGCTGCGATGCTCAGCTTCGATACGAGCTTGGATCTCGGCAACTGAACACCCTGGGCTACACCCCGGCGTTCTTGACCTTTTCAGCCATGCGGTAACCGCCGTTGGCATCCACCGGACCGAGCCTCCTGCGATCATGCCGATCGCCAAGAATGTCAACTGACCGATCATTTTGGCTCCCCGCCTATTTCAGGACCCTGACAGACCGGGCACATACCCACCGGACCGAGCCCATGTCTCCACTGCAGCAGAAGGTTGCGGACGTATGCGCCCATTTGGCACCGACCAGCGTCGCAGTCCCGGTGCTTCTGAAATTCCTTATGAGCGACGGAAACATTCGTGATCGGTCGCTCAGGCATCCGACAGAAGGCTGGGTTGAGCTTCATGATCGGACCTCCACAGATGTTGCTCCAGCGGGGATCAAGCGGGCCTCTTCGACTAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //