Array 1 32424-34078 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 32424 29 100.0 38 ............................. AATTTGTCAATACTCCATGTCATAGCCCTCACCACCGT 32491 29 100.0 37 ............................. TGTAACTATTGAAGAATTCAACGAAGCTATTAATGAA 32557 29 100.0 38 ............................. TTCTCTTCGCCTCTTCCCACAACCCCCATCCCATTAAT 32624 29 100.0 35 ............................. GTGGATATGTGGGAGGAGGATGGTGCCCTTATCGT 32688 29 100.0 36 ............................. AGATTGCACCAACAGGTTATCGCATTACTACAGGTG 32753 29 100.0 41 ............................. TTCATGGTCATCACCCTAATAAATAACAGCGTAACCCTCCC 32823 29 100.0 38 ............................. GCTGACTTTCTTGTTGTAGCAGTTGCTGAAGAGGTCGC 32890 29 100.0 43 ............................. TGTACGGTGTCAGCATGGTCTTCGTCATGGTCTTCTTCGGTGT 32962 29 100.0 40 ............................. CCACTCCCACCACCCCCACGCATAATAAAAGAACAGGAAT 33031 29 100.0 36 ............................. CTGCTGATGGAAAAACATTCTACATCTGGCCTGAGG 33096 29 96.6 41 .................C........... CTCTTCAACAAGCGAATACACTTCAAGGACAAGATCGTCAT 33166 29 100.0 38 ............................. CGACATTCCCCAGCCCTTCGAGGATATCGTCGATTGAT 33233 29 100.0 40 ............................. GGGCGCGTGCTCGTGCCCTCGCCTGCCAGCCGGCAACTGG 33302 29 100.0 38 ............................. TCCACGCGGCCGCTAGCTTCTTCCTCTCCTCCATCCTC 33369 29 100.0 39 ............................. TCTCAAGCACATCTGCTTCTAGCAAATAGTCTGGAAAGT 33437 29 100.0 36 ............................. CTTCATAAAGCAGTACTGGAGCCCAGGGGCATTCTC 33502 29 100.0 38 ............................. GTGTTTTTATCCATAAATCTGTCCCAAGGTCTACGTCA 33569 29 100.0 41 ............................. TGGAGCTCCGGAGGGAGGGGTTCCGTGTGGAGCCCCTCCCG 33639 29 100.0 38 ............................. TAACCTGGGCAAGCTTTGTGCTGTCGTTCATACACACC 33706 29 100.0 38 ............................. AGTTCCTCCCGACCTTGCAGAGGGAAAAGGGATTCTAT 33773 29 100.0 42 ............................. CCTCCCGGTGAGTTCTACACTGTACCTTAGGGAGATGATTTC 33844 29 100.0 37 ............................. ATTTCAACGCCCGCATTTGTACCTGGCGAACCTTGAC 33910 29 100.0 44 ............................. TTGCATAACGAAGAATCCTCTCGACTTCGTCTGGGAGAGCATAT 33983 29 96.6 38 ............................C TGATAGAGCTCTTTTAGTTGCCTCTGGATCTCTCTGAA 34050 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ============================================ ================== 25 29 99.6 39 GTTTCCGTAGAACGTAATCGTGTGGAAAG # Left flank : GTGCTACCAAAGACGAAAAATCCAAACCCCGACTTTTTTTTAGTGTTTTTATTCCCCAATCATCTTCAAAATTTCATATTATGGCGAGAAAACTAACATTTTTGGATACTATCTGCTTTCGATGGTTTTCATTTTCGGTTTACCATTTTAGTGGTAATTTCTTGCCAGATGCGTTCATTTGACAGTGGAGGTAGCTTCCGCCCGCTCTGGCGGTTAGAGGAGCAAACAATTGAGTTTGAAGGGTCTAAGAGATTAGTCAATTCCCTATTTTTGATTTAAATTGCGAGTTCGAGCTTATTTTTGGCCATTTGGTTTTCGATTTCCTAAAATCCAAAATCAAGCATTCTATCAGGATTATTAGTGAAATTTAGAACTATGCAAGCTTTTTCATTTTCAGGCCAGATTTATAAATGAAGTGCAGTGCTACCGGTTCCAAGAAAAAACTTTAAATACCAGCTCCGAGATATCATTACTTGAAGAACAAAGGGAATACGCCAAGG # Right flank : GGAACTTAATGCGCCATTAGCTTTAGAGTTTCCGCTGAGGGAGATTGTGTGCGGCTTTGTGTTTTTGGAACGGGATTTTGTGGGGTTCGAAAAGCCAGGACTTTGCGGTATTGGCTACGTGGCCCGAGTGGTGGTCTCTGCTTATGGTAAACCCTCCTTCCAAAACTCTGCTCTTGTCAAGCTCACTATCGAGGTAGCCAACCTAACACCGAAAGATGTTTCTATAAATTTCGGTGGATATACATCAGGGGTGCTGTCCTTCAGGAAAGAGGGAAGCATCGAGGTGTATGCTGTGGAGATATTCTTTCCACACAGCGCCCTGTCGAGGTTCTAAGCGTTTCCTACTCGGAGTCCATAAAGGATTCTCAGGTGCTCTCTCAGGTGGATGGAGGGTCGTGAAGTTTGGTGTCGTCAATGTTGAAAAAAATCGAGGATGTCAAAACGGTTCTCCTTGCTGAGCCTTTAAATAGGACGATACCGCCGGGGGGAAGAGGGTACTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAATCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 42208-41222 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 42207 30 100.0 38 .............................. GATAGAATTATCATAAAAAAGGTGGGGGGCAATGGATA 42139 30 100.0 45 .............................. GCAAAAGCCGGACGGCTGAGCTGAAGGAAATTTGGGCCCGGCCGG 42064 30 100.0 37 .............................. TCATAGTACAGCTTAACGCAACTTCCGTATGGATGCT 41997 30 100.0 38 .............................. GCTTCTTCTTCTCGTTGTAGTGCTCTATTGGGACAACG 41929 30 100.0 37 .............................. CCTTCTTCCCCTCCTTCACCCAGGCCAACAGGCTGGA 41862 30 100.0 36 .............................. ATGTAACCAGGATTTTGTGTGTGTCCGTGTGAGAGT 41796 30 100.0 37 .............................. GGCTGCTCCAGACGAGATAACAACCAGAAACGTTGAA 41729 30 100.0 37 .............................. CGTGGGGTGGATCTGAAGCCCCCTCATTTTTACATTT 41662 30 100.0 38 .............................. GAAGCTCGAATAACTCCTCCTCGTCCTCTAGTATCACC 41594 30 100.0 42 .............................. TCTATCAGCTCGTACTTGCCGTCATCGCGCTTACGTACCAAA 41522 30 100.0 38 .............................. CTTCTGGTTCTTCCGTAAAGAAACTAACTATTTCCTTT 41454 30 100.0 35 .............................. CGACCGCGTTCATCCTCCACGCCAGCCCCGCCCTC 41389 30 100.0 40 .............................. ACGTGGAGAGCTCGAGCTCTGTGGGGAGAACTATTTGCGC 41319 30 100.0 38 .............................. AATTGTAGACGACGAATAGTTTGTGCTTGTTGTTGAGG 41251 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 15 30 100.0 38 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Left flank : TGAAGATCATCATTGAGCCGAAATTTTTTAGATACTTATTTTTGGGTGCTATTTTTCTCGAAAAGGTTAGGATGTGGTTTGTTTGGGTAAATGGTGGGTTGTGGGGGGTTTGGAAGTCTTTAGTAATTTTTTGTTAGTATATGGCATTTTGTTGTGTTTTCTCGCGTGTTTTGTAACGAAATTTTTTTCGGAATTTGGAGTGGGGCAAGGAGGGCACTCCTTTCACCCCAAACCCTACTAGAATCGTATTTTTTCCAAATCTCTAACATAAAAAGTCTTGATTTTTGATTTAATTGGTTGAGAAACCGTTGGAAGCCTTATGATCACTTTCGATCATTGAAATTATGGGGTTTTTTAGAAGCTTTTTACCAAAAGTTTTGACTCCTCAAGACTGCATTTCAAGCCCTCTCAAGGCCTCGTTAAGACCCCCTCGCCAAAAGATTTATAAAATCCAAGACTCCCAAGAAAAGCATAGAAGAAAACAAGCAAAAAACCCACCT # Right flank : CTTATAAAGGAAAATCGTGGATATATGTATGTGTTCTTGCTTCAGGATTTCCTTGAATGGGGTTTCTAAATAAGGGGAGATGATAGATCCAAAATTACGAGTGGGGGGAAAGTTAGTGAAGGAGCCTAAGATTGGAGTCCTTGTTATAATTATCCTTTTTTCGCTTGCGCTATCCATGGAAGGATGCATAGAAAAAAGTAGGGATACTGAAAGTAAAGATATCTTGACAACAACTGTAACAGAGACCATAACGAGGACTGAGACGATAATGACCACTAGCACTAAAACAATAAACTATACTATAACCAAAAAAGTGACTACAACATACACTATAACAGAAACAAAAGTAGTTACTAAAACTATAACGACTACGGTAACATTAACATCGACAAAATCTTTTGTCACTTGTGCCTCTCCAAATATCAAATATATAAAAGTTGATCCATCTTTCACACCACTAGACAAAGTAGATCATATTACAATCGAAATCTACATCGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 556584-557712 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 556584 30 100.0 39 .............................. TCCGGGCTAACCTCGTAAGTCTGGACGTTCGTCTCGGGG 556653 30 100.0 38 .............................. TCCCCTGCTCCGGCTTCTTCATCGTGAAGAAGAACATC 556721 30 100.0 37 .............................. CCCCGGCTCGGAGCTCAAATCAGGAAAAGGTTCAAAT 556788 30 100.0 36 .............................. TTCTAATAATCACGAGTACGACGTCTTCGTCGTCAT 556854 30 100.0 37 .............................. TCGTTTTCTTCATTATTATCTATGTCATTACACCTAT 556921 30 100.0 37 .............................. CGGGGCGCGAGCCGGCGGGAAATCCGCCCCCGCGGGG 556988 30 100.0 38 .............................. CTGGATCTCTCTGAATTCTTCTGGATCACTAGTAACCT 557056 30 100.0 36 .............................. TACTGAGAAGCATTACTATCGTGAACTCTGGGCTGT 557122 30 100.0 46 .............................. TCGGGCTTCCGCCCCAGACTGGCCTGTGGACGTAAATCACGACCTC 557198 30 100.0 38 .............................. GCAGTAGTTTGTGCTGCTCGTTCATAACTACATATAGT 557266 30 100.0 39 .............................. GTTGGGGCGGAGATAATAGACTTCGAGGGCGCCGCGAGC 557335 30 100.0 35 .............................. TCATTCGCAGTGTATAAAAACACGTGGTTGGCGGT 557400 30 100.0 43 .............................. AAGAAGAAGGGTGTCGAGGATGTCGTTTTCGACGTGTATCTCG 557473 30 100.0 38 .............................. CTTTGAAATTCTCGTAGAGGCCATTGGGGTCCCGGGGT 557541 30 100.0 35 .............................. ACGTACTCTACAAAGATCTCAAATAACTCCTCCTC 557606 30 100.0 38 .............................. CTTCTTTCAAGCCGGAAATGGTTGCGGCCGGCTTGTAG 557674 30 100.0 0 .............................. | CCTGGGTTC [557688] ========== ====== ====== ====== ============================== ============================================== ================== 17 30 100.0 38 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Left flank : AAGGCTCAGCAATTGAAAACGAAAATTTTTAGATACTAGTTTTGAACAGTTATTTTGCCTAAAAATGCTGAGATATTTTTCTTTTGGGCAAATGGTGGGTTGTGGGGGGTTTGGAGGGTTTTAGTAATGTTTTGTTGGTATATAACGTTTTGTTGTGTTTTTTCGTGTGTTTTGTGACGAATTTTTTTCGGAGTTGGGAGTGGGGTGGGGAGAACAGTCCTCTCACGCAAAACCCTATTGAAATTGTGTCTTTTTCCACTTACTGTTAAATTATTCCTTAATTTTTGATTTAATTGGTTGAGAAACCGTTGGAAGCCTTATGATCACTTTCGATCATTGAAATTATGGGGTTTTTTAGAAGCTTTTTACCAAAAGTTTTGACTCCTCAAGACTGCATTTCAAGCCCTCTCAAGGCCTCGTTAAGACCCCCTCGCCAAAAGATTTATAAAATCCAAGACTCCCAAGAAAAGCATAGAAGAAAACAAGCAAAAAACCCACCT # Right flank : GTGTGTTTGGAGGGGGTTTGTGATTGTTTTTATTCTTATTTTTGCTATTCGTTAGTTGGGTTGGGTTATTATTTTGATTATCTGTTGGTTGGATCTTAAGTTATTATGAGCTCTATCCGTGCTGTTGGGTGCTTGTAAGGACGCTTTATATCTGGTGGTTTTGAGGGGAAGGGGCGGGTGTTGAATGTCAGGTTAATTGTGGGGACGTGTGATGGTGAAATTTTCAGGACTCGCGTGTTGATTAATGTCATGACAAGCCAGCCCAACGATTACTACTGAAGTTCGTTAACCAGGCAATGCTAAAATCCCACCTTCACTCACAAAATTTCTTCTCGAACTTCCCACCACTCGCAAAATAAAAAATAAAAAATACTATAACCCACCCCAACACTTTGCGTAAAAAACTAACGCAAACCCAACAACCACCACCAAAACAAAAAGAAAAAATACGTAGCTACGTCAAGAACAAGTAATTTTTTGAATATGGTTAACGTAACAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 693109-695095 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 693109 30 100.0 36 .............................. AACTTAGTCGGCGATAGGTATGACATAGTTAAGAAA 693175 30 100.0 37 .............................. CGGGGCCTGATGCGGGCGGGATCCGCCCCGCCGGCCT 693242 30 100.0 42 .............................. CAAACAACTGCACCCACGACCGCGCCAGGAGGGCCGGCTAAG 693314 30 100.0 36 .............................. TTCTAATAATCACGAGTACGACGTCTTCGTCGTCAT 693380 30 100.0 37 .............................. TCGTTTTCTTCATTATTATCTATGTCATTACACCTAT 693447 30 100.0 37 .............................. CGGGGCGCGAGCCGGCGGGAAATCCGCCCCCGCGGGG 693514 30 100.0 38 .............................. CTGGATCTCTCTGAATTCTTCTGGATCACTAGTAACCT 693582 30 100.0 36 .............................. GGATTTTCTGGAGTACTTTTGGAGTTCCTGGATCGT 693648 30 100.0 36 .............................. CTCTGCCTTCACTTCCACCACCCCCAAGCCTTCTTC 693714 30 100.0 36 .............................. GATGACGGCAACAACCTCGCCCGCCCTGTTCTTCGG 693780 30 100.0 37 .............................. TGCTGGAATGTGGGGCGTCGGCGGTAGGATCAAGTGG 693847 30 100.0 38 .............................. TTGACGAGATCATCGACGGTCTCGAGAAGGGGGAGGCT 693915 30 100.0 42 .............................. CGGAACCAGGCGAGGAGGGCCTGCTTCTTTGGGCTCCACGCC 693987 30 100.0 37 .............................. GGGGAGGCGAGAAGGCTAGGTTTCTTCATAGCATCAG 694054 30 100.0 37 .............................. CCGCCCTCCCTCGTCCTCATCTCAACCGCCCCACTGC 694121 30 100.0 37 .............................. TTGATAATCTCTGGATCCTCGAAGCCGGCCTTGAGCA 694188 30 100.0 38 .............................. ACTCTCTCCCAAAGTAACAACTGCCAGCGCTGGTCTCT 694256 30 100.0 36 .............................. CATTCAAGGGAATTGGATTTACTGGCTTGTAGCGAA 694322 30 100.0 38 .............................. CTGTAAAGAAAGTTGACAGTTTCTTGACCTCTTCCCAT 694390 30 100.0 38 .............................. CCTTTTTAGCAGTTCATCTGCGAGCCGAAACAGAGCCT 694458 30 100.0 38 .............................. GGCAAAAAAGCTTGGAGAAGCTAGGCCTTTACGGACTG 694526 30 100.0 37 .............................. TATGGATACTGTAGGTACACTCGATACGTCAGCGCAA 694593 30 100.0 39 .............................. GGAGCCCCAGAGGAGTGTTCCGGGCCCGGGGGAGTCCCC 694662 30 100.0 35 .............................. CGTCGTCTTCGTAGATGTCTATTATCTCTACCTCC 694727 30 100.0 38 .............................. TCACTTGTTCTAACTGCTGGTAAAGCTCTTTTAGTTGC 694795 30 100.0 37 .............................. TTTCGGGGGTTCGGGGCCTGAGCCGGCGGGGAATCCG 694862 30 100.0 40 .............................. TGATGTAGTTAGCGAGATCCTCCTGGAGTCCATTCCTAGG 694932 30 100.0 37 .............................. GACCCCGGAATGCCTACGAATTCAGTTAACAACTCAA 694999 30 100.0 37 .............................. GGAAAGGCTTCCACGTTGAGTTGCCCCGCTCGTCCCT 695066 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ========================================== ================== 30 30 99.9 38 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Left flank : AAGCTTTTAGGCTTTGGCAGAAAAATTTTCGATTCCAGTCTTCATACTTTCTTTTTTCATTTTACTGGCTTGTAGTGGAGTTTTTGACCGCCAGAGCTCTGAAATCCCATTGGAAGTCTTTAGTAATTTTTTGTTAGTATATGGCATTTTGTTGTGTTTTCTCGCGTGTTTTGTAACGAAATTTTTTTCGGAATTTGGAGTGGGGCAAGGAGGGCACTCCTTTCACCCCAAACCCTACTAGAATCGTATTTTTTCCAAATCTCTAACATAAAAAGTCTTGATTTTTGATTTAATTGGTTGAGAAACCGTTGGAAGCCTTATGATCACTTTCGATCATTGAAATTATGGGGTTTTTTAGAAGCTTTTTACCAAAAGTTTTGACTCCTCAAGACTGCATTTCAAGCCCTCTCAAGGCCTCGTTAAGACCCCCTCGCCAAAAGATTTATAAAATCCAAGACTCCCAAGAAAAGCATAGAAGAAAACAAGCAAAAAACCCACCT # Right flank : GTTTACCCTAATTGCGGCCGTGATCATTGCAATCCTCTGATTGTTTTTGTTATTATTTTTGTTACTCGTTGGTTTGGTTGGGTTATTATTTTGGCTATCCGTCTGATCGATCATGGTAATTACGAGTTCTACCCGCGGTGCTAAGTGGGAGAAAAGCATTCGTACGAACGCACGATACCCATGCACTTCACCCTTGAAGGGCGGGTGTGGAAAATCGTGTCGAGAGTTAGGACGCGGGCCGGCAAAATTTTCAAGACCCGCATGCTGACTAATGTCATAACAAACCAGCCTAGGAATTACTACTTGGATTCGTTAACCGGGGAGTGTTAAGATTTCACCCTCCCTCACGATTTTTTTCTTGAATTTTTCTAGTGCGCGCAAAATAAGAAAATAAAAAAATATACTGCGTTCCACTTCAACACTTTGCGTAAAAAACTAACGCAAACTATCAGAGCAATACTAAAATGGAAAAGAAAAAGAAAAAAATATGTAGCTACGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 856323-857397 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 856323 30 100.0 37 .............................. AGAATAGTTAATAAAGACAAAATAAGGGACTATCTGG 856390 30 100.0 37 .............................. AAAATCTTCATCTCCCACCACCTCCCTTCTTTTTGTC 856457 30 100.0 37 .............................. ACCCGCACGACGTCATAAAGCTGCCGAAGAACAGGGC 856524 30 100.0 40 .............................. CATGACAACAAAAATGAGGGGGGTGGTTGGGCGTGAGTTT 856594 30 100.0 36 .............................. AATACGGGGCCCCGTTCCGAGGGCCCTCGGGGCGTG 856660 30 100.0 36 .............................. TTGACTCAGAGTCTGCGAATTGCGCTGAGGATGCTC 856726 30 100.0 36 .............................. CACGGGGATTTGGTTAGGGAGGGGTTGAGGAGGAAG 856792 30 100.0 49 .............................. CACTTCTTCACGTCCTCACTGATTTTGGAGTGAGCAAATTCAGGAAATC 856871 30 100.0 50 .............................. CCATTCCGGGGGGTTCGGGGCGTGATGCGGGCGGGAATCCGCCCCCGCGG 856951 30 100.0 38 .............................. GGCCGGGCCCGGATGACGGCATAGGCGCCCCCGGGCGG 857019 30 100.0 37 .............................. CATTGACTCTTCTTTTAGGAAGATCATGAGAATCGGG 857086 30 100.0 44 .............................. GTCGCTATCACGAAACAGCTCGGTCTCCTCGTGCTTAGTCCTGG 857160 30 100.0 37 .............................. GGCGGTCCTAGTAGGAGGACACTGGTCTTCTCTGGGT 857227 30 100.0 39 .............................. TTCTTTCCTTCAAAACCGTCCGGACCAACAGCCACGGTT 857296 30 100.0 42 .............................. TGTTTTCTTCGAAGAACTGGCGCGGAGGCAGGTCGATTGAGG 857368 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================== ================== 16 30 100.0 40 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Left flank : TCCGAAAATTTATGCCTTTCGAAAAATATTAGATGCTCGCTCTCGGGCGTTATTTTGGTCGAAAAAGTCAAAGTGTGGTTTATTTGAGCAAATGGTGGGTTGTGAGTGGTTTGGAAGATTTTAGTAACTTTTTGTTAGTGTGTAACGTTTGGTTATGATTTTTTACATATTTTGTAACGAATTTTTTTCGGGATTTGGAGTAGGGCGGGGAGAACAGTCCTCTCACGCAAAACCCTGTTGAAATTGTGCCTTTTTCCCCTTGCTGTTAGATTATTTCTTAATTTTTGATTTAATTTGCGGAGAGGCCGTTGGAAGTCTCATGCTCATTTTCGAGCATTGAAATTTTGGGGTTTTTAGGAGTTCTTTTACCCCGAGTTCTAAACTCTCACAATTGCATTTCAAGCCCTCTCAAGGCTTCATTAAGACCCCTTTGCCGAAAGACTTATAAAATCCAAACCCGCTAAGAAGAGTAGGGAGGAAAACAAGCAAAAAGCCCGCCT # Right flank : GGGGACTTCTTAATGCTAAAGGGGGACTTAACAAAAGCAAAAATTAGAGGCCCTGAGAGAGTATCTTCGTCGTAACGTCATTGCCCTCCTTGTCGTAGATCCTATAGTAGCACTTGCACGGGAACTTCATGGCGGCCCTCCTAGTGCCCTCGATGGCGAACTTAAGGTGCTGCCTGTTGACCCTTATGCTGAGGATCTTCTGGTCCCTCTTGAGCCTCGCAGCGAGGCCTATGGGCTTTCCGAAGGGCCTGCGCATACCGTTTCCGTAACGGTCAGCCTTCCTTCCGGTGGCCATTGGGTTCTCCCGGAGGACCTGGAAGGGATAGACCCTTATCTTGAAGTGGTAGTTGCTCCTACCGACGTTCTTCTGAAGGTAGCGGTTCACCTGCTGTCTGGCAGCTTCGAGGGCGTTCTGCCTGATCTGGACGGGCTCGGCCGTGTGAAGGGCAACCTCAAACTCGAAGTCACCTGCGGGGTTCCCCATGTCAAATATCGTTATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1231461-1233114 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 1231461 29 100.0 39 ............................. TCAGTCAACCACGCAAATCACCGAAAATATTCAGCCAAC 1231529 29 100.0 39 ............................. AAGATTTTTGTGAACCCCTTTCGTCTTTTTACTATTGCA 1231597 29 100.0 39 ............................. ATAATATGTTTGCGATGTTCACGCCGTTTATTTCCACGT 1231665 29 100.0 37 ............................. CGTACCCCTCCTCTGGGTACGCGTAGAATTCTACTGC 1231731 29 100.0 46 ............................. AGATTTGGCCGGCTGAGCTGAGACTGAGCTGAGATTTGGCCCGAGG 1231806 29 100.0 39 ............................. GACTGCCACTTAGCAGTACCAGCTGCCTTCACACCCTTG 1231874 29 100.0 34 ............................. GTTTTGTTCTTAAAACAAAAACAAGGTTGCTTTT 1231937 29 100.0 36 ............................. TTCTTTTGCTTCTGCTGAATTTTTGCTCCTCTGGAG 1232002 29 100.0 39 ............................. TGCCCCAGCGCTCCGCTTCCTCAAAAACGAGCTCCGCGT 1232070 29 100.0 39 ............................. AATGTCATCAATGAGTGTGTTCGTATCGCTGTCGCTCCC 1232138 29 100.0 41 ............................. TAGTATAATGAGAATGGTGCGGAGGTGTGGAAGGATGAGAG 1232208 29 100.0 36 ............................. TGGATTTCACTTGTTCTAACTGCTGGTAAAGCTCTT 1232273 29 100.0 36 ............................. ATTGATAGAGTGTTATCGCCAGTCAAGTCAATTGGG 1232338 29 100.0 39 ............................. AGGCACTTGTTCAGGCTTGCCGTTCTCATCAAAAGTCCA 1232406 29 100.0 39 ............................. CTTCTCTAACCCTCCTGCTTTTTTGAACAATGTTCGGGC 1232474 29 100.0 38 ............................. CCTTCTCGCACCAGCCTCTCTAGCGTGCTTCTAAATAC 1232541 29 100.0 39 ............................. CACTATACCCATCTGGATATTCCCCAACGAATTCCTCCT 1232609 29 100.0 38 ............................. AATTCGGAAGAATAGAAATCCACGTTAAAAAGGTAAAA 1232676 29 100.0 44 ............................. TGGAAAGGGCTCGCCGACGCCACCATAGACACCGCCTGGAAGAG 1232749 29 96.6 38 ................A............ ACGGAGTATCTCATTGCAATGATTTCTAAAATCTTCAT 1232816 29 96.6 40 ................A............ TTCGAGTTGAAAATCTTCTGCACGAACTTCGTCTTTGATA 1232885 29 96.6 40 ................A............ GATGAGGGCGTCCTGGGCCCGGGTCACCCCCGCCCGTTGA 1232954 29 96.6 39 ................A............ ACGAAGACAAAGTATCTCTCTGGGTTCTCTAGTATCTCT 1233022 29 96.6 35 ................A............ CCGAATACCTTAAAGCAACTAGTTCAACTATTTTC 1233086 29 89.7 0 ..............C.A........G... | ========== ====== ====== ====== ============================= ============================================== ================== 25 29 98.9 39 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Left flank : GTGTTACCGCCCAGCAGGTAACTGACAGATTTGCTTCGATTTTCAAGTCTCTCCCACGTTCTTCCTTATTTTTGCCATTGACTCACTTTCAATGGGTCATCACAGAAAAGAACTGCCCAAAGTTGTTTCCTCTTTCGGTTTACCATTTCAGTAGTAATCTCTTGTCAGGTGTGTTCGTTTGGAAGTGGGAGGAGCTCGTGCTCGCTTGGGGAGTGTGAGGAGCAGGTACTGGAGTTCGAGGGGTTCGCGCGGTTAATTAAGCCTTTGTTTTTGGTTTTGATTGCGGGCTCGGGCTTATTTTTGACCAATTGGTTTTCGATTTCCAAAAATCCAAAATTTGGCACTCTAATAGGATTATTAATGAAATTCAGGTTCATGCGAGCTTTTTCATTTTCGGGCCAGATTTATAAGCGAAGTGCAGTGCCACCAATTCCGAGGAAAAACCTTAAATACACAATCCGAAAAGCTACTATTTGAAGAACAAGAAAAATAAACCCAGG # Right flank : GTGCCTCCGATGGGGTGCTACGGAGGTAAGAACAGAATATGATGAGAAGATGACGAAAATAAGAAGTCAATAAATCCCGAGTCTCTTCTTGGCCTCCTCGCTCATCCGGTCAGGCGTCCATGGCGGGTCGAAAGTTAACTCTATCTCCGCGTCCCTAACGCCCGGTATCTCCAGGATCTTCTCCTCAACGGCCCTGAGAATCCACACGGTGAGCGGGCAGCCAGGGGTTGTCATCGTCATCTTCACGTAAATGGTTCTGTCGGGCCTTATATCCAGCTCATATATCAGGCCAAGGTTCACGACGTCCAGACCTATCTCGGGGTCTATAACCTCCTTGAGCTTCTCAAGGATCATCTCCCTCGTGAGCTCCACGTTCTCGTCCACCTTCTCCTCCCTGGCAAACCCTATCTCGACCTGCCTGACGCCCTCCAGCTCCTTTATCCGGGTGTAAATCTTGAGGAGCGTCGCATCGTCAACCTTCTCCTTGAACCTTATCCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 7 1272599-1273527 **** Predicted by CRISPRDetect 2.4 *** >NC_015680.1 Pyrococcus yayanosii CH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1272599 29 100.0 42 ............................. AAAGTAGGTATTTTGGATGAAGGGAGGTGATTGCTGTGAAGT 1272670 29 100.0 38 ............................. TATCACTTTTTCAATGACTTTTCTCCCCCTATCATCCT 1272737 29 100.0 41 ............................. TCGTCGATCAACGTGAACGTCACAAACACAAGCTTGGACGT 1272807 29 100.0 41 ............................. TTACCACTCCCCCTAACACTACTTCAATCTCAAAGTTCTTT 1272877 29 100.0 39 ............................. AAATTCTTCCTGAATTCTCTATACGAACTAAATACAACT 1272945 29 100.0 38 ............................. CAAGGGGCGTGGAGGCGCTGTATCGAAAATTGCGCCCC 1273012 29 100.0 50 ............................. GTCTACATCGAGGCTCTACCAGAGCGGATTGCAGCCCCCCACACGGTCTT 1273091 29 100.0 36 ............................. ACATGCTCACGATGAAAATCGACAGTGTTATGACCG 1273156 29 100.0 37 ............................. GGTTTTCTCATCCCACTGCGCGTGGATTAGAGCAGAA 1273222 29 100.0 41 ............................. CTAAAGCACTGCGTGAGGCGCGTGAGGCCTCAGATGGGCGT 1273292 29 100.0 37 ............................. CTTTAGCGTCGAAATTGGGTCGATGGAAAGAAAGGTT 1273358 29 100.0 42 ............................. GTGAAGAAACTGACGATCTTCCTTGCCTCATTCCACCGACCC 1273429 29 100.0 41 ............................. GGGCTCCTGTTCCCGTCAACGTTGCCGATGTTGAACCATCA 1273499 29 72.4 0 ..............T......C.TTCCTC | ========== ====== ====== ====== ============================= ================================================== ================== 14 29 98.0 40 GTTTCCGTAGAACGGAATCGTGTGGAAAG # Left flank : GTGCTACTATTCGATGGAGAACCCGTTTTTGTATTTTAATTTCTGCTTTTGATTTTTGGTCTCCCCCAGTTTTCCCGTTGGAGTACTATTTCGGGCTTTTTAAGAAATTTTATGCTCTTCAGCCAGTTTAGCGTTTCAGCCAAGATTCGAATTTCGGGTTGGTCTCGCTACCTAACCAGAAGTAAATAAGAAATGAGCGCACTCTGATGTGGAAAAAGAGACAGCATGGAGGAGATTAAACCCCTAAGAATAGACGAAAATCAATCAAACCCAGAAACACGGCATTATGACTTCATAAATCCAATGCAACTGGTTTCGACAGCTTATTTTTGCCCTTCAAGAATTGATTGGGTAGATAAGAACGACATCAGCTATCTAAACGCCCTAAAATTTTAGGGCCATCTTTATAAATGAAGTGCAGTGCTACCGGTTCCGAGAAAAAACTTTAAATACCAGCTCCGAGATACCATTACCTGAAGAACAAAGGGAACACGCCAAGG # Right flank : CACCATACTCTCGGAGGGTTGAGCGTGTGAAGAAGGCTTACTACATCACCCAGATGGGGGTCCTTGAGAGGAGGGGCAACACGCTGTTCTTCGAGAACGAGAACCTGAAGAGGGCAATACCCATCAACTCCACCAGTGAGATACACTGTTTTAAGCCAGTCTCCCTGACGAGCGGGGCCATAAAGATCCTCTCCGAGAAGAACGTTCCCGTGCATTTCTACAACAAGTACGGCTACTACAGGGGCTCATACATACCGGTTGAAGGCCAAATAAGCGGGACGGTGGTCATAAAACAGGCAGAGCACCACCTCGACCCTGAAAAGAGGCTCTACATAGCGAGGCAGTTCCTTGAGGGGATAAGGGCCTCGATGGTGGCCCTTCTTAAGTCCTACGAGGCCGATTACAGCCACATCAGGGAAGTTCAGGTCGAGGGTGAAAGCCCGGCGGAGCTCATGGGCACTGAGAGCGGGCTCTGGAAGGAGTTCTACGGCATATTCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGGAATCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //