Array 1 12826-12658 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCU01000044.1 Streptococcus cristatus strain LRIIBV4 Contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12825 36 100.0 30 .................................... TTACAACAAAGATGGAAACTTTGTTATCCT 12759 36 100.0 30 .................................... CAAGTAAGATACAACAAACTCATCTTCCTC 12693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCGAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTAATATCTTTTCCTTCAAATGAAGGCTATCTTTATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAGTTTCGGTTTATGTATGAAAGTTTTGTACAGCGTTATCCATCCAATGAGATTCCTAATGAAGAAGAATTTCTGATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAACATATGAGTCTTTCGATTTATGATATGGTTACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : AGAAGAAAACTAAGCGGGCTTGGTACTGGTCTCATAAAATTGATTTTTATCTTGACAAACTTATTACTGGGAACAAGCAATGTTGTAGATGGTTCTGAAGAATTCGAAAGTGAAGATTAGAAGGAAAAGTAATTATGGAAAATGTAAGCCAAATATCCCAATGTCAGACTCTTTGGGCTAGAAATAAATATCTGGTTCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGACTTGGTGGAAGCAGCACATGTCCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAACCGAGGTCAGGTCTGCAATGCGTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCTAGCTGAAAAAGAAAACTTTATGCTACTTTTAGAGCGATACCAAGTAGGTCAGGTGGAGCAGAAGGTTTTGGTAGAAGCTGTAAAAGATTTGCTTCGAAAGTACCCCAATCCCTATCTGCAGAATTCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 23197-21877 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCU01000061.1 Streptococcus cristatus strain LRIIBV4 Contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 23196 23 100.0 49 ....................... TGATGATTGTTAGCCTTAGATTTGGCAATACGCTCGTTAGAACCCCCAA 23124 23 100.0 49 ....................... TCACGGTAGATGTAAGTAACAACAGTCTTACCTTCATTAGAGCCCCTAA 23052 23 100.0 49 ....................... CAAAGTCCGTCTGGTTCTTGCATTCATCACCCTTTCGTTAGATCCCCCT 22980 23 100.0 48 ....................... TGATATTCTTCGACTGTAAACATTGATCCGATTTGTTAGAACCCCCAA 22909 23 100.0 47 ....................... TCTATACGGCTCTGAATATCCATATCAAGATTTTGTTAGCCCCCCCC 22839 23 100.0 49 ....................... TCAGCAATTTTAATTTTTCCACCAAACTCTAATCCGTTAGAGGCCCCCT 22767 23 95.7 50 ..............T........ AGGCTTTCATACCATTTTATGGCTTCTTCTTGTGTTTGTTAGACCCCCCC 22694 23 95.7 48 ..............T........ TAAGAAGCCTTGGAATTTGGATCTACCGTAATGTTTGTTAGCCCCCCC 22623 23 87.0 50 ..C.....A.............T ACACCACAGGTTTTTCTCTTTCGGGAATACTCATGCTGTTAGCCCCCCCT 22550 23 95.7 52 ..............T........ AAAACAACGATGCTGAAAATATAGATACTGTGTTCTTTCGTTAGATCCCCCC 22475 23 95.7 48 ..............T........ TGATGATTGTTAGCCTTAGATTTGGCAATACGCTCGTTAGCCCCCCCT 22404 23 95.7 54 ................T...... ATAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGAGTTAGACTCTTCCACA 22327 22 73.9 48 T...T.-.TA....T........ AATTTCGTCGTTCTGATAAGTTCTAGTGTCATTGTGTTAGAACTCCCT 22257 23 87.0 49 G.......A.....T........ TTCCATTTTTTTCACCCCGTATTTCTATAAAAATTGTGTTAGCCCCCCC 22185 23 100.0 50 ....................... TTATCTACGTTTTCATATTGCTCTAGTTCCTTGTTGGTTAGAACCCCCCA 22112 23 91.3 47 G.............T........ CATTTTCCTTCTTTCTACTGGAATAAATCCAGAATGTTAGCCCCCCC 22042 23 95.7 50 ..............T........ TGAAGGGCTGCCCCCTCATGAATAGCCGCTGAAAAGGTTAGATCCCCACT 21969 23 95.7 47 ..............T........ TTTCACCCTTTGAGGCTTTAATGCGGAAAGTGATTCATTAGCCCCCC 21899 23 78.3 0 ........A........A..GTG | ========== ====== ====== ====== ======================= ====================================================== ================== 19 23 94.1 49 AATCCTCGCGAGGGGACGGAAAC # Left flank : ACCGATTTCTGTCCCACTCTCATGATGGCGCGGTGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTATTTCTGGGCTAGACATGGTATAATGGACTTAGGTTTTAGCTAGATTCTAAGGGGTACAAGATGTGGTGGGGCTCTTTTGAGGCTTTATACAAGATATGCCGTTAGAACCCCCC # Right flank : GATAGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTTGCCAAGAAAGAAGGATCTTGGCTGCTTAAGCTTTTTTAAACGCTTCAAAAACATTGACAACGCTTTCAAAGCTTGATATAATAAGCTCAGTAAATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAACATACTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGACGAAGAATTGGTCAGTAAGCTTCAGGGCTTTTTGATGGCAAGCATTTCGCCAGACTTTGCGACCTTTCTCCATGAGCAGGAGACCAATCCCTATTCGATGAATCTGAGATCCACGCGCGATGAGTCGGTATGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACAGCAAATGCTAGCTCCCTTATTAAACTTGGAAACCATCAAGCTAGAGAGCTACGCTGAGGAAATCCTTGTCAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGCGAGGGGACGGAAAC # Alternate repeat : AATCCTCGCGAGGGTACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //