Array 1 63459-62828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAI01000002.1 Porphyromonas gulae strain COT-052 OH1451 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 63458 36 100.0 30 .................................... AATGGCAATTCGGTAATGTCAAGACGCTCT 63392 36 100.0 30 .................................... AATAGTTTCTTTAGCAGGATTAATTCTCAA 63326 36 100.0 30 .................................... AACTGTAAGCCCCGCAATACCTACTTTACT 63260 36 100.0 31 .................................... CCCCTTTCCCGAAAATCACCCCCGCATCCTT 63193 36 100.0 30 .................................... ACAAGCAGGCCCCAATCCCATTTCCTGGAC 63127 36 100.0 30 .................................... AGCACGATATAAGCAATCGGCCAGCGCGTC 63061 36 100.0 30 .................................... ATCGAAGAACAAATCAGAAAAAAATCCAGT 62995 36 100.0 30 .................................... TCTCTCTTTCTTCTTCTGTTCTTTTCGTCA 62929 36 100.0 30 .................................... GGCATGTTGGAAGACGTTAGTCTTATCGTG 62863 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 30 GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Left flank : GCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCTTGTCCGAACTGACGGACGAATTTTATAAGAATGGCAACGGTGTTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGGATAGCTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGGGCGAACTTTGAACTTTTGAGTGCGAACCGGCAGGAACGTAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCACCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTCTCAAATTCGATGGGGATAG # Right flank : ATGATTCTTGATTGGTGGCTTGGGCGTTGGAGTGTAGAGGGAGAGAGTAGCGCATGGGGATTCTTCCGTGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTCTTCGGTGAATTTGTGTCGGGGAGTGCTTTCCCTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATGCCGGCATTGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCGCCAAGTTCCTGCACGAACTTGGTGGGTGCCTCTTTATTTATACCTCCGCTAAAGGCTTTTTGAAATGTCCGATTTATATCAATCGGGCTTGCAATCTATATATTTATCGCAATCGATTTATATATAAATCAAAAACGATTTATATACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 12120-11564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAI01000055.1 Porphyromonas gulae strain COT-052 OH1451 contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 12119 37 100.0 40 ..................................... CCAATTAAAAATTTTTTCATCTTCTTGTTGTTTTTTTTTG 12042 37 100.0 41 ..................................... GATGATCTTGAATAAAAACCAAAACTTCCTTGTTTGGGTTA 11964 37 100.0 36 ..................................... GGAAATCGGTTTACAACTGTTACTTTCATAATTAAA 11891 37 100.0 36 ..................................... CATTAACACTCTTGTCGCAGGAAGCCATACCTCCCA 11818 37 100.0 37 ..................................... TCCTAAAACAGCTTGAGCAGTTCCCTTTCTTGTATAA 11744 37 100.0 37 ..................................... AGTTCCTCCATGATCCAAAACATACCGATTAGTCAGT 11670 37 100.0 35 ..................................... TCGATGCCATAGTCTGATAGTTCAAGCTCTTTCCC 11598 35 94.6 0 .......................--............ | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 99.3 38 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCAGCATTGTTATGCTGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACGACTCTTTTCTCCCGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAACAGGGGTGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGCTCCCACTTTCTGATTTTCGAAAATGGAAAATCAGCTAATCTGATTGTATATCAATGAGATATAAGCATCTCAATGGCAAAAATGATGTTATAGCTGCATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAGTGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TCTTGATGCTCTACTCATCATCACTTGGACTTTCCAAGTTAGATTTTGGAGCGGTTAATATTGTGTTTTGCACAAGATAAGAGCATAATCACAGCCTTCCGCTTGTGTGCGAGCCAAGGCCGTTTACGCACCGTAATTTTCTATTTCGATGCTCCGAAAAATGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTGCGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGCTCTAAGCTCTTACCCTTCTACAACATCTCGGATACGACCCAAAATATCCTGCTTGATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 14135-12797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAI01000063.1 Porphyromonas gulae strain COT-052 OH1451 contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 14134 46 100.0 30 .............................................. ACATTTCGCTTGCATTAGGGCTGCACCATC 14058 46 100.0 30 .............................................. AGCCCGACGGAAACGCCGATGGCGAAACTG 13982 46 100.0 30 .............................................. ACGCGTCCCGGTCGGGAATATGTGTTTATG 13906 46 100.0 30 .............................................. AATACGGGCGTCTTTCTGCGTTTGCGTGGG 13830 46 100.0 30 .............................................. TAACCAATCAGACTTATTTTTCGCATCCCT 13754 46 100.0 30 .............................................. ATAAGTCCCCATCTCACCGTCCGCCAGCTG 13678 46 100.0 30 .............................................. CTGCGCGGAGGCATTCTCCGCACGTGACAA 13602 46 100.0 30 .............................................. AGCAATAAGTCAGACTCCGGGGCTCTGCTC 13526 46 100.0 30 .............................................. GAATCATTTGCGTTTGTATTACATGGTTCC 13450 46 100.0 30 .............................................. CGATTCGCGAGCGGGTGCTGATAGGGGTAC 13374 46 100.0 30 .............................................. CAGCGGCTCAAAGTGCTGCACCTGCAGGAA 13298 46 100.0 30 .............................................. TAGCTTATCCTAAAAGAAGAAGCTATAACC 13222 46 100.0 30 .............................................. TGCCTTTCTTCGACATTCAGGTCTCTTATC 13146 46 100.0 30 .............................................. TACGAAATTGTCACAGACAATCAAGGCGGG 13070 46 100.0 30 .............................................. AGGTGTGGAGCGCTACCGATGAGCAGCAGC 12994 46 100.0 30 .............................................. ATATCCTCACGAAGTCGGAATGTCTCAAAG 12918 46 100.0 30 .............................................. ACGAAGCTCTCGCCGATGAGAACGCTGACG 12842 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== ============================== ================== 18 46 99.9 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGATAGGAAACGTGCAGCAATCTTTCGCAAAAACCTGATTAAAGATGGATTCGAGATGTTCCAATTTTCTATATATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCACCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : GAAAAAATGGAAAGCACAAAAACCTGAAAATAATAATCTACTCAAAAATCATGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAATAAGCATCTGCGGAGAAAAGAAAAACGATGCAAAAGTAGCGAGGAAATGGACTTTCACGGACTAAAATACGAATTAAAACAAGCCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATATAAATCGTTTCTGTTTTATATATAAATCGTTTTCAATAAATATATAGATCGTAAGTGATTTATATATAAATCGCAGACCCCAAAAAGCCTTTTCCGAAGTCGGAATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCTTTTTGCATGTGATTCGATGTAGCTGCACGATTCCGCTCTGCGATCTCGGATCGGATCGAGGGCTGTCGCTGTACCGAGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 96488-96261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAI01000082.1 Porphyromonas gulae strain COT-052 OH1451 contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 96487 29 89.7 37 ........T.C.C................ TGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAGCG 96421 29 100.0 37 ............................. CTCAAGAAGACGCACACGATGGCATGGATGCAGACGG 96355 29 100.0 37 ............................. TCTTTTGCGCCGTACATCCTATATAGTATGCAGCAGG 96289 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 TTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CCCAGCGAGGTACGGCTAAAGCCTATTCGGGATTATACAAGAGAGAGTTTACGGAAGAGGACAGCGAAATCCGTATTATCAAGGATGAGAAGAAGCGACCGCTCCTCACCATCAACGGGCTTCCCATTACCGATTGGTGCGAGCAGAAATGGAAACAGCTAATCAATCGCAACCGCTCGCATCGGTTGTAAATGAATACGCATACTTTTTCCTTTCATAGTTGTATTTCAGTCCCGATAAAACTTTTTAAGAAGAAAATCACGCAAAAACGCTCACTTTCCCTCGCAAATATGTACCTTTGCAAGCAGTAAAAGTGAGCGTTCTTTGGCTATTCAAAACAATGTGCCTCAATGCACTCCGCTCATTTCTAAATCGTTACCTGTGCATCTACTCCAAAATGTTAACACTCTATTATCCAACGAGATAGTTCGCAAGCAAAAAATTGTTAAGGAACAATTGAAATGGCATGCAGCGACAAGGTTCTCCGTGACGGAGCTAAT # Right flank : CCGTCACAAATATAGGTTTTTATGTTTGAATGTGAGAGGGTTACTAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCGAGGGGTGCGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGAGGGTTAATCATGGCAGAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //