Array 1 4-500 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBQ01000023.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ16 sequence023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 ......T............................. TACAACAACACGGTTAACGACGGGTTAACG 70 36 94.4 30 T............T...................... AGTAAAACAGCTTGTTGAATCAGGGAACAT 136 36 100.0 29 .................................... TTGGTCTCAATCGGTAGAGCTAGAGCCTC 201 36 100.0 30 .................................... CCTTAGGTTTAGCATCTGAAACATTAGGCA 267 36 100.0 30 .................................... AGCTAATTGATTTTAGCCTGTCAGCCATCG 333 36 100.0 30 .................................... TTATCCTTTGAGTTACACGGCTATTTTAAC 399 36 100.0 30 .................................... AATAACAAATAAGACTTTTGGACGAGGTCG 465 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.2 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TAAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGCGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 38323-39089 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBQ01000024.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ16 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 38323 32 100.0 34 ................................ CAATCACGGTTCATGTTCCTGAAAGAATAGTGTG 38389 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 38459 32 100.0 35 ................................ AGAGCAAGAAAAAAAGATTGAATTTGATGACCAGC 38526 32 100.0 35 ................................ ATGGTATTATAAAAAGCCTGTGTATGTAAAACTTG 38593 32 100.0 34 ................................ GTTTAGCTTATGAGACTATTATAGACTAGTACGC 38659 32 100.0 34 ................................ ATTTTAATATCTCCTTAATTTTTAATTGTTAAAA 38725 32 100.0 33 ................................ GTTTTACCACTACCTCTACCTATCACACAATTA 38790 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 38856 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 38924 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 38992 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 39058 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 99.2 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CCTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 406-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBQ01000087.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ16 sequence087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 405 36 100.0 31 .................................... CTTCCGAACTTGCTAAAGAATTTAATCTTTA 338 36 100.0 30 .................................... TTCGTACTTAGCTACATTATTAAAGTGTTC 272 36 100.0 30 .................................... TGGAGCTTTGATGTTTAAGGACGGCTATCA 206 36 100.0 30 .................................... AATCTAGATTTTGCGACTTACGGAGTAAAT 140 36 100.0 30 .................................... CCGAGTTTTTTTCAACTGCGATTGTGCTAA 74 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 99.5 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CTACAACAAAACGGTTAACGACGGGGTCACTGTTGTAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //