Array 1 34227-33602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYW010000038.1 Phocaeicola massiliensis strain D40t1_170626_A9 NODE_38_length_42182_cov_22.2978, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 34226 32 100.0 34 ................................ TGATGCTACATCCACCATGAGCATGGTATTTATG 34160 32 100.0 35 ................................ ACAATCACCTCAGCATTTCGGACTCCCGAACATAA 34093 32 100.0 33 ................................ GAGCTATTGCAACAGCGAGTCAAAGATGTCGAC 34028 32 100.0 33 ................................ GAGCTATTGCAACAGCGAGTCAAAGATGTCGAC 33963 32 100.0 34 ................................ CTCAGCCTCTCACCTCTTCACGCGACTCACCTCT 33897 32 100.0 34 ................................ TACAGTTACATCTACAAACATTACTATAACGAAT 33831 32 100.0 34 ................................ CTATCAAAACATTAGGCTTAGCTGATTTGTTAAG 33765 32 100.0 34 ................................ AATGCCTCGATAGTAGGATACAGCCCCTTGCTGC 33699 32 100.0 34 ................................ TCCATACAGCGAGAAGCAATACTTAACCAATACA 33633 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTCTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGGCTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : TAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGATGCCGGACATGAAGATAGACAGGTTTACCACGCAGAGAAAACTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGCTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATATCGAAATATTCCATTAAAACTTCAGAGAAGATTATCCGAAGTAACTTATGCAGACTACGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTATTTGGATAATCTACACGGATCACCCACAGGATTTTCGGATTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 70806-70299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYW010000013.1 Phocaeicola massiliensis strain D40t1_170626_A9 NODE_13_length_116913_cov_33.3438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 70805 47 93.6 29 A.............................A..............G. AATTCGCGTAGCTTATCCCTGTCGGTGCC 70729 47 100.0 30 ............................................... TGAAGATAGGATGGGCAATAAAAAACCTTT 70652 47 100.0 30 ............................................... CGGAGGTGTTTATGTATATAAGTAAGGAAG 70575 47 100.0 29 ............................................... GCTATACATAATATAAAAGTTCATCATGG 70499 47 100.0 30 ............................................... TAAATGTTGATAGAGGTTTTACACGTTATA 70422 47 100.0 30 ............................................... TTCTTTTTATTAATATGGCAAGCCGTCACG 70345 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 99.1 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGTGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : ATGGAAGCAGAAGTAAAACAAGTAATCAAGGTTGTGATTTGCTTTCAAATTAGTATATTTGTTGTAATAAAGTATTTTCCCTTTGAATATCAACAGATTAGATAAAACTCGCACGAGAACGGGCAACGGATAAGAAAAAGCTGGACTGTGTAGAACTGCCATATTTCTCATGCTTTCAAATAACTCTTTAATTCGATTACAAAGATAACATTTCTATTTTAAAGGACATAATAAATGCCTTCAATCTTATCGGATAAGATTGAGAAAAAAATAAATATTCAGTAGCCGAGTCCCCATAACCACAGGCAAAGGTAACTCGTGTTCTACTCGTCCAAGCAAGGCCAAGCCCTTCGGGTTCGTGGAAAAAATCATCCTCGCCCGAAGGGCTTGCGGTATTTTTTCCCGAAGCCTTGCATGTACGGAACACGACCTTTTAAAGCCTGTAGTTATGGGAACTCCGGCCCCGAAATGCCGGACTAACAAATATTGATTGTTATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 87376-85409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYW010000015.1 Phocaeicola massiliensis strain D40t1_170626_A9 NODE_15_length_94577_cov_29.6961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 87375 47 95.7 30 ................A............................G. TAGGCAGCCAAGAAGGATTAATTCAATACG 87298 47 97.9 30 ................A.............................. TAAATTATACAGATATGGAACTGATAAGAA 87221 47 100.0 30 ............................................... TGAATCTATTCAGAATCGAAAAAATCAAAG 87144 47 100.0 29 ............................................... GCCATATCCAAATAACAATCAAAATCCAA 87068 47 100.0 30 ............................................... CTCTTGGGTCGCATAATCTTCGATTGGCGA 86991 47 100.0 30 ............................................... ACAATACATTCGACCTCTATAACGATAGAA 86914 47 100.0 30 ............................................... TAATGCCTATTAGTGATGCTGAAGGCTATG 86837 47 100.0 30 ............................................... CGGGAGGGGAACCTGATACTCAACGAGGCT 86760 47 100.0 30 ............................................... GTAAAAGAGAGTTTCCAATTAGTCATTTTC 86683 47 100.0 30 ............................................... GGAAACTCATAGTTGCACCTAACGAAGCTC 86606 47 100.0 30 ............................................... TTTTATCCATTCTTTATTTTCCATCTATAA 86529 47 100.0 30 ............................................... TAACCTGAAACAGGGTATCAAAAGTATTAT 86452 47 100.0 29 ............................................... CATCGGCAGATATGCAGTTTTTAGAAAGC 86376 47 100.0 30 ............................................... TCTGTTCGTGAGGCATACGGTACACTAAAT 86299 47 100.0 30 ............................................... TACTTTCTACCATGTGCACCTCTCGAAAGT 86222 47 100.0 30 ............................................... GGTGATTCATATACCAAACGTGGATAGAGA 86145 47 100.0 30 ............................................... TTACCTATCGAGCAGGATATCGTAAACATA 86068 47 100.0 30 ............................................... CTTGGGGTTCTTCTGCTATCACAGGATTGC 85991 47 100.0 29 ............................................... AGAAAAGGCGGTTGCTGTGTTTGGCGATA 85915 47 100.0 30 ............................................... GAAATAACGGTTTTTAAGCCGAATTATCCG 85838 47 100.0 30 ............................................... GCGCACCCGCTTGATAATATAAGATTTACC 85761 47 100.0 30 ............................................... TCCTATTTCGGGCGTACCCTCTGAGAACTG 85684 47 100.0 29 ............................................... AATTTTCTTTGAGGTAGTCAAGCCTGCCC 85608 47 100.0 30 ............................................... TTGAACACGATTATCCGACGGTGGAATATA 85531 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 85455 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 26 47 99.8 30 GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : TCTCGCTTTTTTTAAGGTAGAACGATACCTTTACATTTACCTGATTCATAACTAATTCCTTTGTTTGCAAAATTATTATATAGCGAGCAAATGAATGGCATGAAAAATATAGCGGAACGGAGAATAAGGTCCTTCGCCTAACAAACAAACCCTGTCTTTTTTTCTAATACGGAAAAATATGACTAAGTTTGCATGATAGACATAGCAAGAAACATCGTTCCATGCAGTGATAAACAGGATATGAAAAGTAGAAATGGAAGCTATTTCCAACCATCTTTTTCAACCCGGAAAAGGCAACGGATAAGTAGCAATTTGTTTTCCTAACTCCCTCAAAAACGGTCAAAAACCACAAATGGAAGAATCTGGAACAAAGCTACATATTTCTATAGTTCTCAAACACTTTGCACTATTTTCTCAAAAGTTATCCGAATGTGGGCGAGTTTCACTATCTTTGAACCATTGAAAACAACTCAAAAATTACTTCTAATATCTTTTTTTAT # Right flank : TGAATATATGTTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //