Array 1 162616-160634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNC01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162615 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162554 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162493 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162432 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162371 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162310 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162249 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162188 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162127 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162066 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162005 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161944 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161883 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161822 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161761 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161700 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161639 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161578 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161517 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161456 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161395 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161334 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161273 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161212 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161151 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161090 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161029 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160968 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160907 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160846 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160785 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160724 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160663 29 93.1 0 A...........T................ | A [160636] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181227-179123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNC01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181226 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181165 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181104 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181043 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180982 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180921 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180860 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180799 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180738 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180677 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180616 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180555 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180494 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180433 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180372 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180311 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180250 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180189 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180128 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180067 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180006 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179945 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179883 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179822 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179761 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179700 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179639 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179577 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179516 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179455 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179394 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179333 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179272 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179211 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179150 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //