Array 1 1750673-1753404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032566.1 Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1750673 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 1750733 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 1750793 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 1750853 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 1750913 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 1750974 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 1751034 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 1751094 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 1751154 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 1751214 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 1751274 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 1751334 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 1751395 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 1751455 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 1751516 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 1751576 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 1751636 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 1751696 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 1751756 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 1751816 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 1751876 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 1751936 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 1751996 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 1752056 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 1752116 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 1752177 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 1752237 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 1752297 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 1752357 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 1752417 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 1752477 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 1752537 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 1752597 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 1752657 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 1752717 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 1752777 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 1752837 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 1752897 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 1752957 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 1753017 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 1753077 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 1753137 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 1753197 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 1753257 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 1753317 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 1753377 27 85.7 0 ...................-A.A.C... | T [1753401] ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2683655-2681886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032566.1 Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2683654 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 2683594 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 2683534 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 2683474 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 2683414 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 2683354 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 2683293 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 2683233 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 2683173 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 2683112 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 2683052 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 2682993 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 2682933 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 2682873 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 2682813 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 2682753 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 2682693 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 2682633 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 2682573 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 2682513 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 2682453 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 2682393 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 2682333 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 2682273 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 2682213 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 2682153 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 2682093 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 2682033 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 2681973 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2681913 27 85.7 0 .................C...CC.-... | T [2681888] ========== ====== ====== ====== ============================ ================================= ================== 30 28 97.5 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //