Array 1 1867310-1865523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007003.1 Trueperella pyogenes TP8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1867309 29 100.0 32 ............................. CAAGAACCTGTCTAAATCACGGTTGCGCTCCG 1867248 29 100.0 32 ............................. AACGCTGGGAATCCGGGCCGCTGCCAAGCCGA 1867187 29 100.0 32 ............................. GGTAGTCCCGTGCTTTGTGCCGAGCGAGACAC 1867126 29 100.0 32 ............................. GACCTGGTGACAGTCCACCTTGAGGCAGCCAA 1867065 29 100.0 32 ............................. GACCAACATGCCGTCGTTGGCTGAGCAGGCCG 1867004 29 100.0 32 ............................. CCGACAACCCGACAGCCCGACAACCCAAAAGT 1866943 29 100.0 32 ............................. GAAAGGAACACACAACTCATGAACGCAATTGA 1866882 29 96.6 32 ............................G CCCCCAATTTATGAGGGGCAGGGTTGCGCGTG 1866821 29 96.6 32 ............................T CAGTGAATCACCAATTCAAAATTGACCAAAAC 1866760 29 100.0 32 ............................. TCGTAGCTCCGGCCTTGTAGGAGTTGATCAAT 1866699 29 96.6 32 ............................T GATCTCATCGGCCATTTGTGAGACGGTCTTGG 1866638 29 100.0 32 ............................. CGGCGAGCGCCGTTATCAGTGCCGCAAGCCCG 1866577 29 100.0 32 ............................. CGGTCGTCGGTTCCCATGATTAGACGCCGAGG 1866516 29 89.7 20 ..........................TGG GTAGGGCAGAGATATAAGGG Deletion [1866468] 1866467 29 100.0 32 ............................. ACGTCAGATTCGCCAGTGTCCTGGTCGACGGT 1866406 29 96.6 32 ............................G GAGACGGAGCTTACATACAGCGAGAGTGACGC 1866345 29 96.6 32 ............................T GCGCGTAGCCATATCAAGTGTGAATGCAGTGA 1866284 29 100.0 32 ............................. GTGCTTGAGGAGCGCCAGTTTTCTTTGACGGT 1866223 29 100.0 32 ............................. TGCGCGCAGTCGAGTAATAGAACGCAACACGT 1866162 29 100.0 32 ............................. AAGTGGCGAATCAAGGGCGAATTTGAAGCACA 1866101 29 100.0 32 ............................. GTGATTAGCAAGCTGTGGGCTGATGGGATCGC 1866040 29 100.0 32 ............................. CCAAGTACGCCCCAAAACTTTCGCCACCGACA 1865979 29 96.6 32 ............................T GAAAGCCCGCCTCACATACAGCCGAAAGAAGC 1865918 29 100.0 32 ............................. CGTCGCCCACTCACCGAAGCTCAACGCGCCGA 1865857 29 96.6 32 ............................T AAAAGTCTCGATCAATAAATCGTTTACGGAGA 1865796 29 100.0 32 ............................. ATCGCCGGACAAAACCTAGGAGCCTACCCGTG 1865735 29 100.0 32 ............................. CCATACAGGATCGGTTCGTGATCGTCCTCGTA 1865674 29 96.6 32 ............................T ATCCACGCACGCGCGAAGAATTATCCCTGAGG 1865613 29 96.6 32 ........T.................... GTCTACACGCTCAACCCGACCGCCGAAACCGG 1865552 29 93.1 0 ..........................T.A | C [1865527] ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.4 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGCCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGTCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAACCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATGCAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //