Array 1 186510-184893 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVA01000003.1 Salmonella enterica strain BCW_6301 NODE_3_length_349853_cov_4.43597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186509 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 186448 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 186386 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 186325 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 186264 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 186203 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 186142 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186081 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186020 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 185959 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 185898 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 185837 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 185776 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 185715 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 185654 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 185593 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 185532 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 185471 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 185410 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 185349 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185288 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185227 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185166 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185105 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185044 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 184983 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 184922 29 93.1 0 A...........T................ | A [184895] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203788-203150 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVA01000003.1 Salmonella enterica strain BCW_6301 NODE_3_length_349853_cov_4.43597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203787 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 203726 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 203665 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 203604 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 203543 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 203482 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 203421 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 203360 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 203299 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 203238 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203177 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //