Array 1 109071-110004 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACSET010000003.1 Treponema sp. Marseille-Q4130 NODE_3_length_333834_cov_49.526039, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	===============================	===================================	==================
    109071	    31	 100.0	    33	...............................	ACGGTAAGGCACACGATCTTGCGGTCAGTCCGA  	
    109135	    31	 100.0	    33	...............................	GGTTTTTGCGCTGAAGCCGCAAGCGGAAATAAC  	
    109199	    31	 100.0	    34	...............................	TGCCATGTATACACGGGCGTTATATTTGCTGTTT 	
    109264	    31	 100.0	    33	...............................	CCGATAACCGCGTCATCATCTACGCCAAAGGGA  	
    109328	    31	 100.0	    35	...............................	AAAGATAGTATAAAGGCTCTTGTAGACGGTAAGTT	
    109394	    31	 100.0	    33	...............................	CATATCAGGCAAGAGGTCGACGGCAAGGAATCC  	
    109458	    31	 100.0	    34	...............................	GCAAGCTGATCAGTAACGCAGCAGATAAAGTTAC 	
    109523	    31	 100.0	    34	...............................	TTACACGGATGCACGACTATCCTATAACAATAAG 	
    109588	    31	 100.0	    33	...............................	GACTTCAACCGCTTCTTTAAGCTCTGATAATAC  	
    109652	    31	 100.0	    32	...............................	TTTCGGCAGTCGTGCGCACTTGCATCCGTGCG   	
    109715	    31	  90.3	    35	..........C..G............C....	AAACAGTTTGATGCGTCCGATTTCATCCTTCCAAC	
    109781	    31	  93.5	    34	..........C..G.................	AACGAGCGTGTCGGCGGCGCCATCAAGATAGCGG 	
    109846	    31	  93.5	    33	..........C..G.................	CGTTTTGTACTTACGCGCGATCCGAAAAGTTAC  	
    109910	    31	  93.5	    33	..........C..G.................	CGATCATAGCACGGAAAATCCCATTGAGTATAC  	
    109974	    31	  90.3	     0	.............C...A............T	|                                  	
==========	======	======	======	===============================	===================================	==================
        15	    31	  97.4	    34	GTCGCTCCCTTACAGGAGCGTGAATTGAAAC	                                   	       

# Left flank :   GACGGCTATCCGGTATATCTTTGGAAATAAAAGAGGGCGCGCACGATGATGATGCTGGTAAGTTATGATGTGGCAAAAGATGAAAAAGGGGAAAAGCGGCTTCGGCATGTGGCGAAGATTCTTGAAAATTACGGGCAGCGCGTTCAGTATTCCGTCTTTGAATGCTTAGTCGACCCCGCGCAATGGGTTGCGCTGAAAAGTAAATTGCTCAATGAAATAAATCCGAATTACGACAGTATACGTTTTTACGCGCTCGGTGCAAATTGGGAGCGTAAGGTCGAACACGTAGGGCAAAAGAAACCCATCAATCCGCAAGGGATTTTGATTTTATAATCGGATTTCCTACCGCGAACGGGAAGCACACATTGGTTATTCATTCCGCTTGAATTTTATAACCTGTTATATTATAGTGAATTAGATATTGACACTGTAGTTTCGGAATGAAGTTCGCGGAAATTATAGTGTAAATATCGATATTACAAAAGAATAACTGCTATACT
# Right flank :  TACATTCGGCGTTTTCGAAAATTGATATTTTTTTGCAATATCATATTTTAATAAATCTTTTTTACGAAAATAAATCGTTAATAATTCCATAAGACATTACGAAAAATATAATCCGCTTTCGCTCTCCCGATCAATGAGACTATCGGCAGTATCATTGACGCGTCATCTCTTTTATCATATGGTGTTCTTAAGGAGACTTCACTTTTACGGAGGATTGCATGAAGATTACGTTGAAAAAAATACTTTTTACGGGCTATGCGGTTTTAGCGCTGTTGCTTGCCGTTTTTACGGCGGCAGGCTGTGCGGGAAAAAATGCCGTAAAAGACGGCGACTATGCGGTGAGCGTTACGGGGCACAACGGCCCGATCGAACTTACGGTGAGCTTTTCGACAAAAAAGATTTCCGCTGTAACGGTGACCAAAGAAAGCGAAACCGACGTGCTGTCGGATCCGGCGCTTGTCGATTTGCCGAAAAAGATAGTTGAAGCGAACAGCCTTGCC

# Questionable array : NO	 Score: 9.13
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCTTACAGGAGCGTGAATTGAAAC
# Alternate repeat :   GTCGCTCCCTCACGGGAGCGTGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.60,-3.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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