Array 1 172622-175635 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================== ================== 172622 30 100.0 37 .............................. CGATGCCAACGGCGTGGCCGCAAGGTGGGAGGTGCAA 172689 30 100.0 70 .............................. CATGCGTCCTGGCCCTGCTTGATGGCAGTTTCCAGACCAACATTGTCTTTGCCATCAAATGTGGACTCAT 172789 30 100.0 36 .............................. AAAACTATCAATCTGCTCCTAACATTTACCTCGCAC 172855 30 100.0 36 .............................. GAATTTCTGGAACTAGAAGACCACCTTTTTACCTAA 172921 30 100.0 37 .............................. TTCAACAGTAGGGACTGGATGGTCAAATCCGAAGAGC 172988 30 100.0 36 .............................. GAGGGTTTGAGGAAGGTTAATGCGATACCTGTAAGG 173054 30 100.0 37 .............................. AGGAAAAGCAGGCTCCCTATTATTAAAAGGGGTGGGA 173121 30 100.0 37 .............................. AGGGGCCGGAAGGAAACACGGGCGATGACCCGCACGA 173188 30 100.0 35 .............................. ACCCTCATCGAGTAACTTCTGATTAGGTTGTTTGG 173253 30 100.0 39 .............................. TCTGTTTTTTTATGAATAGTCTGCGATCCCCCTTTTTGT 173322 30 96.7 15 .............................T CGCGATAAGTCATCC Deletion [173367] 173367 30 93.3 15 ...........................C.G GAGAATGACCGGCCT Deletion [173412] 173412 30 100.0 36 .............................. CACAAGCCGGGGTGAGGGACAGGTTCCGATCTGGGC 173478 30 100.0 52 .............................. ATGGTGATAACGCATGGTTCCTATGAGTCATTGAAATCGCATTTGCCGGCCA 173560 30 100.0 39 .............................. AACGTTTCCTGTTGAAAACAGTGGCTGATTTTTTCGAGA 173629 30 100.0 34 .............................. CCGGTGTGCTTGACTTCGGCGATATTCTGATCAA 173693 30 100.0 39 .............................. ATTTGGAATAAATCTTCTTCGTCAACCTCAAGTGTAATT 173762 30 100.0 36 .............................. GATCAAGTCCTTGACCAGTTTTTCGTTGCTACGGCC 173828 30 100.0 35 .............................. GAGAAATTCGCGAGCGTGATGGAAAAGGCCCAGAA 173893 30 100.0 37 .............................. GAGGCGTACCGGGTAGAGTGGGAGAAGAAGAACGCTG 173960 30 100.0 37 .............................. AAGCACTGGTTTCCGATGCTACCGGGCAAATTCTCAT 174027 30 100.0 36 .............................. ATCGCATTCTTCACCGGTACCCCCTCGCCGCCGGTC 174093 30 100.0 36 .............................. AGAGGCCGGGGCTTTTTGTTTTCGTCTTAATCCAAG 174159 30 100.0 35 .............................. GTGGTGGTGTGATGCAATTTAAGGACTTGAACAAA 174224 30 100.0 36 .............................. TGGCCACACGGGACTATGAGCGTGCCCTTAATACGG 174290 30 100.0 35 .............................. GGAGGACCAGCGATGCGGAAAGTATTCCATTTGGC 174355 30 100.0 38 .............................. TTGGTACTGGGTCCTCAAACTCAAAAATCAACTTATCG 174423 30 100.0 37 .............................. TCAGGCCCTCCCAGGGTCCACATCTCACAAAATCCCG 174490 30 100.0 36 .............................. GGTTAAAACGGTAGCATCATTTGGGTTTGCAAATTA 174556 30 100.0 36 .............................. AAAGGTAACAAGGCACTCGCTCAAGAGGTTACCGGC 174622 30 100.0 28 .............................. ATCACGTATAACTGCCGAATCGTATGCA Deletion [174680] 174680 30 100.0 31 .............................. ACCGTATCGAATCCTCTGCGTCCAGACTCTC 174741 30 100.0 36 .............................. TGGCTCTATGCTCCCCAGGTTCTCAAAGAACCCTGG 174807 30 100.0 37 .............................. TGGTAATCAGCTTTGCCTGAAAGCAGGTTTTTGGCAA 174874 30 100.0 37 .............................. AATCATAAAGTCAGCGCTTCTGGCCAGATGTTCAGGA 174941 30 100.0 36 .............................. CTTCCCCGTTCTCCATAGCCTGCAGGTACTCAATTA 175007 30 100.0 37 .............................. AGTAAAGCAGGACCGAATGCCCAGACCTTACCCATGT 175074 30 100.0 36 .............................. CCATTCCCCTAACCACCGATACTAACTTCCGGATCC 175140 30 100.0 36 .............................. TAGGCATCAGACACCCCCCCCATAAAGTTTCCTAAC 175206 30 100.0 36 .............................. ATCATCTCAAGTGCTTCCAGAGCAGCCGTTTCAACA 175272 30 100.0 38 .............................. CGCCGGTCTCCGGTTTTTCCTCGCCCTCGCCAATCCAG 175340 30 100.0 36 .............................. AGGGCGGCGAGAGCGGCACGAAGAAGTACCTGGTGA 175406 30 100.0 37 .............................. ACAGTGTAGGATGGAAGGAATTCCTGGCCGGACTGAA 175473 30 100.0 36 .............................. ACTTCCGCCACCGGCCACCACCTCCCGGCACATAAG 175539 30 100.0 37 .............................. TCCGCATTCTCTCCGTCATACGTTCGCAACTGAGCTT 175606 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================================== ================== 46 30 99.8 36 GTTTCCAGCCTACCTATGAGGAATTGAAAC # Left flank : CTCTGTTTCCAGCTTACCTACGAGGGATCAAACCGAATAGCTGTCGTGCGCCTCGCTGAGATGCCTAAAGTTTCCGGCCTGCCTGCAAGGGATGGAGAACCAAAGCGGGTATCGCCTTGTTGCGTGCGATGAGGCAAGTTCCCAGCCCCTCACGTCTGCCCCGCGGACCGACCCCTTTCTGGTATCAGCCCTGAGTGGACGCCTTTTTTCTCCCTCCGCGATCTTCGTTCTGGCGTTGTAGATGTTTGTTCCTTTGTAAAATTTCGAACTCCGGCAGGGAAATTGTCGTCGATGTCCAATAATGCAAAAAGCACTGGGGATCGACGACAACATGCTGACGTCCTGGCTGCTGATGGCTCCTATTGCATATGCCATGTTTCCATGCTGAAGAGTGTAAACTGACGCAAAACGCGGGCTATCGGTGTGTCGGGCTTCCGAACTGGAGGCACCATCCAGAAAACAGCCAGAATGAAGAGGCTGTATTCGTGCGCCCCGAACTG # Right flank : CAAGCTGAAGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 178818-177731 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 178817 30 100.0 31 .............................. TGGCATAGCTTAGGAGACGCAGGTCTGAGAG 178756 30 100.0 36 .............................. ACCGAGATACGAGGGGTCCAAGAGTTTCTTGGGACC 178690 30 100.0 37 .............................. ACCATTAGTCGAAACGGACTTTCGTCCAAAAACCGTT 178623 30 100.0 37 .............................. TTAGTATTTCAGTCGCGAAGACCGGTCTACAAGTCCT 178556 30 100.0 36 .............................. GAAGGGGCAAGAGGTATCGGACGTCCATGAGTTAAT 178490 30 100.0 37 .............................. TCATTTCGTCCTGGCTTACGGGTCTGGAATGGGTACA 178423 30 100.0 36 .............................. GGTAAGGGGATTGGTGGCTATGATTGAAGGCCTAGG 178357 30 100.0 36 .............................. ATCCGTAGTCTGTGGGGGGGGTATTTCAAAGGATTG 178291 30 100.0 38 .............................. TAGTAGAGTTCACGAAGGTCTCGTCGGCAAAGTTGTCC 178223 30 96.7 36 .......G...................... GCCGCAACACTGTCGCCGTTGCGGATCATTAATTCT 178157 30 100.0 38 .............................. TTTCGGGGCAGTTAGGAACTAAAATGACTAAAAGAGAC 178089 30 100.0 36 .............................. TGTGACAAGTGGCGGACGTCGCCTCCCGCCCCCTAG 178023 30 100.0 24 .............................. CCTCCATCTCTGGTACCGGCGGTC Deletion [177970] 177969 30 83.3 46 ..TT.......G.A.A.............. GCTACAGCCCGAACTGCAACTAGTACAGCCTGCTTTACCAAGGACA A [177964] 177892 30 100.0 36 .............................. GGCCTATACCGGGTGAGTATCCTTCGAGGCGTTTTC 177826 30 100.0 36 .............................. CGTGATAGGGTGTTTCCGGGTCGGGTTGAATGGTGG 177760 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 17 30 98.8 36 CAAAGGTCGGATGGATACTCCTTAACTTTG # Left flank : CGACCTTCAGCCAGTATAAGGAGCTGATCCACGAAGCCCAACAAGATGGCTGGTGCTATGAAGAATTTTTATATCAGCTGATGAAAACTGAGGTTGAAAAAAGGCAGCAAAATCAACTCAAGTGGAGAATCAAAGCTGCCAGTTTCCCTGTGATAAAAACCCTCGATACATTTGAAACCACTATTCAAGCTCATTGCGTAGCGGACGGAGAGGGCAAGCATCATCATTAGCACAAACCTTGAATTTTCCCGCTGGACGGAACTATTTGAAGACCCGATGTTAAGAGCGGCATTAGTCGACCGCTAAAACATAAGCGCACATCTTGAACATGAATGGGGAATCGTACCGGATGAAACACCGTCAGCCTTCAAAGGAATAACAGGCCAAGACCCTTTAGTTAGTCTTCGCAAACAAAGATCTATCTCCTTTGCACTGGATGGTTCAGTTTCAAAAGATCAGGGTGGATCACTTGTAGTGCATATTGACGGCTTAGCATACGT # Right flank : GAACGACACAAACAACTAAAGAGGCGTAGAGCCAAACAAAGGTACCATAAGAAAGCTACCAAGACAAAGGCTACGATGGCCCGTTTAAGAGTACACTAGCAGTTGATTTTTCACTAGGTGAACTAGGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAGGTCGGATGGATACTCCTTAACTTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 456755-457879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 456755 37 100.0 36 ..................................... TTTCATCAAAGCCCCAATATACCAAGGGATATAGGT 456828 37 100.0 37 ..................................... TGTTGTATCACGGGCAGCTATGCGCCAATAATAACTC 456902 37 100.0 38 ..................................... TCATCGCTGAAGCCCGCACTGGCTGGCCTGCTGCACTC 456977 37 100.0 36 ..................................... AACAATTCACCCCTTCTTAATCCCGTCCGTACTGCT 457050 37 100.0 38 ..................................... TAATGTAAAGTATGTGCAATTCAAAATATCAACGGGCT 457125 37 100.0 36 ..................................... GTGGAAGTCGGATGATATGGTTCGACAAACAAAATC 457198 37 100.0 39 ..................................... TCCCGGACGGCTATTGTGTTTTCTTGGAAGCGTCACAGG 457274 37 100.0 38 ..................................... CAATCCGGAACGAGCGGCACCATAGAACGCCAAGCACG 457349 37 100.0 43 ..................................... ATCTCCAACAGCATAAAACTTTGAATCCCTCGTGCCCACACCC 457429 37 100.0 46 ..................................... TCCTCTTATAGGTTGAGCGAAGCGAGGAACTTTGAGATGGTACTCC 457512 37 100.0 39 ..................................... AGGTATAGCGTGGATAGCATGATCTGGGTACAAAGGCAG 457588 37 100.0 62 ..................................... AACGATGGTGCTCGAGAGCATTCAACATGAAGTCATATTTCGCCTACTCCCAGCCCTTTTTA 457687 37 100.0 46 ..................................... CAACCTCATTAAAGGACAACGCCAGCTTCTTCCGGTATTTCAGCTT 457770 37 100.0 36 ..................................... CTCCTCTCAAACGGCTCCCGATATCATATTACCACG 457843 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================== ================== 15 37 100.0 41 GTTGCACTAATTACCCCGATGAAAAGGGGACTGAAAG # Left flank : GACGAGAAAGCGCGCTTCGTCACCGAAGAAATTGACCCCGGTCTGGCCGAGGACTGCCCTGCTACCTGTCCCTTTTATCACGTTTGCTGCGCTGAGGATGGTTCCGAATTGTTGACTTCTTCAATTCCGTAGTTTTTCTGGTATGTAACTTTCGGAATTAAGAAGAAAGGTTCCGCTAGAAGAGTACTTGATTAGGGAAATAAGACTTTTACTTTCGGTTGGTTCCTTATGTTCCTAACCGTAGCTCAAATTGGTTATCGCCAATGGTTTTTCGAAAAAGAAGCCTGAGGAGTAAATATCTGACATCGATAAGGGTTCGAGGTTGTTATTAAATGCCCTGAAAATACGAAGTTAGCTGAAAAAAGAAATTTCGAAAATTTCGAAAGAGGAGTAGTTTTTCATGCAAAAATCTTCGCTTCGAATTTTTGCCCTTGAAAAGCGGTTGAACATTCCGCGGAATCCTCTGTACGGTAAGGCTTTGAACCATACAGCCTGATGCG # Right flank : GTTTGCAATTCAAACCTTGCATTGGACAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTAATTACCCCGATGAAAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 459489-461925 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================== ================== 459489 37 100.0 38 ..................................... TCCTGTTATAGGTTGAGCGGAGCGGGGAACTTTGCTCC 459564 37 100.0 35 ..................................... TGGTATAGCGTGGATAGCATGACCTGGGTGAAGGA 459636 37 100.0 39 ..................................... TACATGAAGTCATATTTCTCCTCCTCCCAGCCCTTTTTA 459712 37 100.0 37 ..................................... ATCTTAATTGAAATAGGGTCTTTCAGCGTTCTTCCGC 459786 37 100.0 35 ..................................... GGTCAGGTCGGCGCCGGCGGCATCCACCCGGAGGT 459858 37 100.0 39 ..................................... CAGGGTAATTGGGATGCCCAAGCGTGGAAGGGTCACAGT 459934 37 100.0 35 ..................................... CTATCTGAACGAGCTGGACCAGTACGCCAAGCACG 460006 37 100.0 36 ..................................... ATCTCCAACAGCATAAAAGTTTTCCCTCGTTTCTCT 460079 37 100.0 38 ..................................... TCCTGTTATAGGTTGAGCGGAGCGGGGAACTTTGCTCC 460154 37 100.0 35 ..................................... TGGTATAGCGTGGATAGCATGATCTGGGTTAAGGA 460226 37 100.0 62 ..................................... AACGATGGTGCTCGAGTGCATTCGACATGAAGTCATATTTCTCCTCCTCCCAGCCCTTTTTA 460325 37 100.0 38 ..................................... TCTCACAATCAACCCCGCTTCTTCCGGTATTTCATCTT 460400 37 100.0 37 ..................................... TTGTGCGTCCAGAAACCTTCCCATTGTCCGACCTTCA 460474 37 100.0 36 ..................................... ACCGTGCCGGTCAGTGTCCACAGCAAACTAATTACC 460547 37 100.0 36 ..................................... GGTCGTAGAACATACTTACCAGCAAGCTGTCATGCG 460620 37 100.0 36 ..................................... TAAATCCTGATATCTTACCCCATGTCGTTTCAAGCC 460693 37 100.0 35 ..................................... CACTGCCGCCAACGACATCCAGTACGTTGACATCG 460765 37 100.0 37 ..................................... CACCATAATCCCACCGCATTTGCACATCGCTTCCGCC 460839 37 100.0 37 ..................................... CCGGCTGAGGATTAATGTATATTTGGACTCTTATGTG 460913 37 100.0 34 ..................................... CGGGAACTGATTACCGCACACTGACGGGTTCAGG 460984 37 100.0 40 ..................................... AGGAAACCACGCTGGTCTGGATAGCCGGGTCAGAAATGCC 461061 37 100.0 74 ..................................... GCACCTGTCGCTTGTCGGCCCGCATGTCTGGATAAGGGTTGCCGCTGGCAACGACAGCTGGTTCCAATGCACTA 461172 37 83.8 35 A..A.......C..GTT.................... AGTCCTGAAACAGGTCATGGAACGGGACAAGGCAG C,GG [461182,461185] 461247 37 100.0 36 ..................................... CCGCTAAGGAGAAAGAAATTAATCCAATAGTAGTAC 461320 37 100.0 35 ..................................... GAAAATATCTTGTATCTGTTCTGGCGGCTATAAGG 461392 37 100.0 39 ..................................... GTAAGTGCAAAAAGCGGCTGGCGTTCTCCCTATTATATG 461468 37 100.0 37 ..................................... AACCAATATGAGTCTTAACCGCTGGCAGGGAATTGGA 461542 37 100.0 35 ..................................... CTTCACATTCATCCGAAAAAGAATTAGAGGAAGAG 461614 37 100.0 37 ..................................... CCCACAGTCTCTTCTGCCCCAAAGGGTGCTTATCCAC 461688 37 100.0 90 ..................................... CCAAATGTGGAGCATGACGAATTGTCACGATGACTATGCTCGTTGGCCGGAGCCCTGAAAGAGGGCATGGCTCTTCTATGAATATCTTCG 461815 37 97.3 37 ....................................T GTAAGGGAAGAGCATGGCTCTTCTATGAATATCTTCG 461889 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================================================================== ================== 32 37 99.3 40 GTTGCACTAATTACCCCGATGAAAAGGGGACTGAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGCACTAATTACCCCGATGAAAAGGGGACTGAAAGATCTCCAACAGCATAAAAGTTTTCCCTCGTTTCTCT # Right flank : TGTAAGGGAAGGAGAGGATGGGCATGACGGTGTTGAGTGAGTTTTTTAGTACTTTGCAGGTGGGCGAGCCGCAGATGTATGAAAATTTAGTCATTTTTCCGTTGCTTGGGATGGAACTACGGGATCCGGGCTACCTCTTACTTGATGAAGCTTTGGTAAAGGGTTTGCTGGAGGTGCGGGAAATAGATGAAAGCGGCAGTGTCAACGAGGTCCTGGTGATCAATAAGGGGGAAACACCCGTCCTCCTAATGGATGGGGAGATACTTTCTGGGGCGAAGCAAAACCGCGTGGTCAACATCAGCATCTTGGTAGCGCCCCGGGTTGAGCTGAAGATACCGGTGAGCTGCGTTGAGCAGGGGCGCTGGCGTTATGTTGCCGACGGTTTTACTGAGAGCAGACGCTTTGCCTATGCTTTTCTGCGTGCAAAGAAGTCGCAACAGGTAGCGGAAAACATCATGTCCTGCGGGGCTTTTATGGCCAATCAGGGGGCCATTTGGGAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTAATTACCCCGATGAAAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1304604-1303999 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================== ================== 1304603 35 100.0 91 ................................... TTAATTGTGGTGAACAAGCATGACAGGCTCGATTGAACATTCCGAGAGGTGCCTCTCGTAGTTACCTACCATGGGAGCTGAGGGTGAAAAG 1304477 35 100.0 38 ................................... TTTGTCGTTCCGTTCCAGTAAAATGAGTCAAATCCAAC 1304404 35 100.0 40 ................................... TTTCGATCTGTGTCTGCAACTCATCAAACAGCTTTTGCTC 1304329 35 100.0 40 ................................... ATCTGGGCAACGAACCGTTGAAGATTTACGTTCAACTCCT 1304254 35 100.0 40 ................................... ATTTGCCGACAAAAAAGCGAAAGGGAAGCTGACGTTGGAA 1304179 35 100.0 38 ................................... ATCTCGTCATCCACCGCACCGAAAAGACGACATATCAA 1304106 35 100.0 38 ................................... ATGTTATCTACGCCGTGCTCTTTGAGTATTTCCACGAA 1304033 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================================================================== ================== 8 35 100.0 47 GTTGCACTCATAACCCCGATGAAAAGGGGACTGAA # Left flank : ACAATCAAATAATTGGGCTGGGCGTAACGCCCGGCTTTTTTGTGGCCCTCAGCGCGGAGAACTTTCTTTCAATGATGTTGTTGTCGTTTACCATAATGATCAGTTGCATCATGTTATTCTTAGAAATTTTTTAAAATAGCTTCTAATAGAGACAAATATTTGGTAAAATTGGCAATGGAACAGGTTTATTACCCCCGGGTTGGTTTAGCACCTGTAGACCGTTTTTATACCTAACAGCAGTTAGGTTTCATTATCTGCAAAACGTTTTTCGAAAAAGGAGCCCTGGGAGGAATTATCTGCCATCTTTCAGGTCAAGAGTTGTCATGATAGTTCATGAAAACATAGTAGCTGCAAGAGAAAGAGATTTCCGGAACTTTCGAATGAGAAGATTATTTCTGTGCAGAATTATGTGCTTCGAAATTTTTGCCTCGGAAAGCATTATAGCTTTCCGCGGAAACCGTTGTGCGGTAAGACTTGGAACCATCCAGTCCGATGCGGGT # Right flank : AGATAATTGACCATGATGAACCGATTAAAAAAACTCGATGAAAAGGGAAATGGAGACTTTAGAAATATATCCCGGCAAAGTATTTTGCCGGGATTTTTTTGTGCGCCCGGCATGGGCGTTAACTTGGTGGTGAAAGTCCACTGCAGGCGAGGCAGCACGAGTCTGCTAGCCGAAGGCAAGGGTGTCCATCGCGAGGTGGGATCTGAAGGAAGCCGGAGGCAAAGCCACGGCCTGATGAACAAGAACCCCATAAGAGGCTAAGTCGCTCGGATGAGCTGGCGAAACACAGCGAAATCCCAGGCTGCCAAGGGGCGGCGGAGTATATGGGGCAGGCGCGGGGCGAAGGTTAACGTTCTTACCCGGGGAGGCCTGCCGGGGAAGCCAGGGAGAGCTGGTAACCCGTGTCGAAAGGCACGGCTGAGCCGGCAGGAGTCAGCAGAAGGCATAGTACCCTAGGTGTCATGGACTCTGGGGGGAAGGCCTGAACATCAAGTCAGAGG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCATAACCCCGATGAAAAGGGGACTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 6 2853474-2856670 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2853474 30 100.0 37 .............................. CCGCGGAACTCGACCCGACCATGCGGCATTCTCCCTC 2853541 30 100.0 35 .............................. TGAACATACTTTGTTCCTCCTTCCGTAATTTTCCA 2853606 30 100.0 37 .............................. GCGAGTAGGGGATGCGGATGCAGTTTGCGGCTTCGTT 2853673 30 100.0 36 .............................. GTAAGTACATGGAAAGGCTGGAATAGGAATGGAGAA 2853739 30 100.0 36 .............................. TCTCTTCAACGCTCTCTGCTTTTTCGATAATGAAAA 2853805 30 100.0 36 .............................. AAGATATACGGCAATTGTGTGGTGATGAGCTTGAAC 2853871 30 100.0 38 .............................. ATATTTTGACAGTTTACCGCCTGGGGTTTTCACTTCAA 2853939 30 100.0 38 .............................. CAGGTCAAAAACCTCCTGCCTGGGGTTGAAGCGGTCCG 2854007 30 100.0 36 .............................. CCCTTTGGGCCGATGACAACCTGACGCCAGGTTTCA 2854073 30 100.0 36 .............................. TTGAAGTGCCCCGGCATAGTGCATCATATAGTTTTT 2854139 30 100.0 36 .............................. TAGGACTCAGGGGCGGCAGAAATCTCAAGGTGAGCC 2854205 30 100.0 36 .............................. CAAGAACTCAGGCAAAAACTCGGTAATCTGTGTGAT 2854271 30 100.0 37 .............................. CTTCATATATCGCAGTGTCCGTTCGTCTGCCGGCTCG 2854338 30 100.0 35 .............................. TCCGGAGGCATGGGCTCTGGACTGAGGGGCTCGCA 2854403 30 100.0 37 .............................. ACTGCTACCTGGGGGCTAAGCCTTTGGGAAGAGCAGT 2854470 30 100.0 38 .............................. AACAGATCCGGGCCGAACACAACCTGGCTTACGGCAGC 2854538 30 100.0 37 .............................. ATCGGTATTCCAGCCAGGGTTGCCGGAATATCCCGTG 2854605 30 100.0 36 .............................. ACATAACTGTAACCGTAGTCGTCGTTTACATCGCCG 2854671 30 100.0 40 .............................. AAAATAAAGAACTTGAATATCTTGCCGAATCAACACGTTT 2854741 30 100.0 37 .............................. AAATGAACCCGACGATCCAGGAAAAAGAGGAATTTTT 2854808 30 100.0 31 .............................. GCGAATGGTTCCCGATGCGTACCATGTCAGG 2854869 30 100.0 27 .............................. TAGTACCATGCTAGCCGATTCACGATA Deletion [2854926] 2854926 30 100.0 33 .............................. ACTGCATCTCAGACAAGCCTAGGCACAGAGTAG 2854989 30 100.0 32 .............................. ACGAATCCAGCTATCAGTATCGGCTCATGCAA 2855051 30 100.0 38 .............................. CGATGCTTGGGTGCTATCTGGGTAAGGGGAGTAATTAC 2855119 30 100.0 36 .............................. TTGAGCTTCTTCGCGTATTTAAGTGCTTCAGATGCA 2855185 30 100.0 37 .............................. CCACAATAGACAGGCAAACGCTTTTCTTTATACTGCC 2855252 30 100.0 36 .............................. CAATCCGAACTCTTGAGGATGGAATTTCCAGACCCG 2855318 30 100.0 35 .............................. TGATTCCATATATTCTTTTGCTACCCGCTCTTTCA 2855383 30 100.0 38 .............................. TTCGGCCGCGGCCTCCCGCTCGGCCCGCAACCTTTTGA 2855451 30 100.0 37 .............................. TTTCTTTATAGGCCAAATCGTCCGCTCGCGTTTCTTC 2855518 30 100.0 36 .............................. ACCGCATCAGCCACCATCTTGGTCAGTTCTTCTTTG 2855584 30 100.0 34 .............................. CCTGAGCGGTCACGACTAGCCAGGCACATAACCG 2855648 30 100.0 32 .............................. ATGTAGACATCGAATTTCACCGTGCATGTTGC 2855710 30 100.0 36 .............................. GCAGGATTCTCAAGGTAGAGGTCATCAATCTCCTTT 2855776 30 100.0 36 .............................. TAAAGCTCCACATCCGACCGCGCATCGCCTTCAACT 2855842 30 100.0 36 .............................. TGGAGACTGCTCAGCTACTGCATTTCCTTGGTTAAC 2855908 30 100.0 36 .............................. GACATCCGAAAAAGAAATGAAAGGAGTGCTGATGAA 2855974 30 100.0 37 .............................. CATCTCTTCAAGAACAGCAAAGAATGTGTGCTTGTCG 2856041 30 100.0 36 .............................. GACATCCGAAAAAGAAATGAAAGGAGTGCTGATGAA 2856107 30 100.0 37 .............................. CATCTCTTCAAGAACAGCAAAGAATGTGTGCTTGTCG 2856174 30 100.0 39 .............................. TGGTATATATAGACCTAACTCCTTCGTGATGTACTTTGA 2856243 30 100.0 36 .............................. CAGGATTACGCTGGAATTTGAATGAAAGGAGGAGGA 2856309 30 100.0 36 .............................. ACGACCATGAACACCTTACTTCCTCCTCCTTTCATT 2856375 30 100.0 35 .............................. TCGGGCAAGCCTATTTTACTCCGCCGGCAGGCTCC 2856440 30 100.0 38 .............................. TTGAGCTTCTCCGCGTATTTAAGTGCTTCAGATGCATC 2856508 30 100.0 36 .............................. ATGTTGTGAATGATGATGGGATTCCGCTTGAAGAGC 2856574 30 100.0 37 .............................. TCCGTTAGCATTTGCTAAGGATGAGGTGGTGGTCAAA 2856641 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 49 30 100.0 36 GTTTTCAGCGTACCTATGAGGAATTGAAAC # Left flank : AAGACCGTCTATTATAAAGATTACGTTGTAAAGGGATGGCTTGGGCAGTATCTCCTGAGGGGGACCCCTGAGTTGCTCAACATCGCCTATGATGCCGGAATCGGAGCGAAGAACTCCCAGGGCTTTGGTATGGTTGAAATTATATGACGCAGCTTCTGCACATTAAATGAAAAGCACTACTATGATAGATAAACTGACTGAGACGGCATGATACAACGCCCCGAATTGATTCGGGTGTTCCCAAAGAGACTTTTACTGAGATTCGACAATGTCTATATGCTGGTTTGTACTGACAACCTTGAAAAAGTGAAAAAGATAGAGGGGGAATCAGAAAAAGAAAAATGGCCTTTTGTGCTGTCGTCGACCCCGAGTAGCGTAAAAACTACCGGGGATCGACGACAGCAAAAAGTCCGTAATGAAGCCAGAAAGCCCTTAAATCCAACAAAAACCCCTCAACGGGTAAAAATCCATGAGGGGGCATTTTTGGCGGATCGTGACGG # Right flank : CTGCAGATGACGAGAGGTAAGCGTCAAATACAACCCACCTTGGCACAGTGCTCGAGATTAAGGGATAATCTTCCTCAGAAAACGAACTGAGGAGGATTTCCCCTTATGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAGCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 7 2858133-2862577 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================== ================== 2858133 30 100.0 37 .............................. TCCGGGACGGTATTGAGTATGAATTCACCATCTTTCT 2858200 30 100.0 37 .............................. AATATACAAGCCCCATAATCATCCCGATTTTTCTCTT 2858267 30 100.0 36 .............................. TCAACCCCCTCGTATCCAGTTAAAATTCCGATGCCG 2858333 30 100.0 36 .............................. TGGGCTCTGCTCGCCGGGTGCTTCTTCACCTCTACC 2858399 30 100.0 36 .............................. TAGGACTTTTTTCCTAACTTTAGTGGAAACTTCTTC 2858465 30 100.0 36 .............................. GTTTTAGCGATGCGGCTTTAAAAGACCTTGAACAGA 2858531 30 100.0 37 .............................. AGAGCGCCGACCGCGGGGCAGGTAATATGATAATACC 2858598 30 100.0 36 .............................. GCAAGCACCGTCATTGCGCTCATCACGCCTGATGGA 2858664 30 100.0 35 .............................. TTCAACAAAAGTGTGCCAAAAAATGCAAAACAGAA 2858729 30 100.0 35 .............................. GGAAGGGGATCTCGAGAAGGGACTTTCTATTCTTG 2858794 30 100.0 37 .............................. TGGCGCGATAGGACGAGAATATGCCACTTTCCTCTCT 2858861 30 100.0 36 .............................. CTTCGAGGAGCTTCATCATGCCCTCGATCACGCTAA 2858927 30 96.7 91 .............................T AGCTGAAGTGCCCCGTTTTCACGTCATGAGGAATGAAACATTCTGAGTACTTTTAGTTCCGTTTAGTGTACCTAGAGGAATTGACTACGTC T [2858954] 2859049 30 66.7 17 AAG.C.TTTT...GC............... TAGGACACTCAGGTGCA Deletion [2859096] 2859096 30 100.0 36 .............................. TTATACTTTTACGACATATAATGCAGATGGTACTGA 2859162 30 100.0 37 .............................. GAAGAAAAACGTAAAGAACTCGTTAAACCTTACAACG 2859229 30 100.0 37 .............................. ACAAACTGGAAGCCGGCAGAGAGTTGGACGCACTGGT 2859296 30 100.0 114 .............................. GGTGCCGATCGGACTGTAACTTCGTTTTCAGCGTACCTGGATGACGTCCATATTATCCCGTACCCTGTTTTAGCGTACTGCTGAATTGACATACGCTTAGCCTATCGCCAAGCA 2859440 28 83.3 64 ....G....C.........--.......T. GCAGTGGCCAGGTAGACTCACTCGATGTTCAGCGTACCGTTGACCGGTCACTGCAACCCGGGTA 2859532 30 96.7 37 T............................. CAGAACGATATTTCAATCTACATAAAATTGAAAATGT 2859599 30 100.0 36 .............................. GAAACGCTAAAAAACTCATAAAAGCAGGAGGGAGAA 2859665 30 100.0 39 .............................. ACCCCACCAGATCCAGGAGAATCCGCTTTACCGGCCCGG 2859734 30 100.0 38 .............................. TACTTCGATAACTTCATACTCAGCATCGGGACGCATAA 2859802 30 100.0 39 .............................. AGAACTCACGAGCAGTCACGATTCATCAGCACTCCTTTC 2859871 30 100.0 39 .............................. GCGTGAGCGATTCTCGGGGCACGGCGGCACGATACGCCA 2859940 30 100.0 37 .............................. CATAGTAACCACCGAGGAATCTGTTCCCGTAATCATT 2860007 30 100.0 37 .............................. AATTAAGTTTAAGGAGGTCTTGAAATGTCAGTTGCTG 2860074 30 100.0 32 .............................. ACGGGTGCAATCCGGAATTGACATGTCCTACT 2860136 30 100.0 32 .............................. CATCTATGACCTGCACGTAAAGGCATCTTCAG 2860198 30 93.3 30 ............GG................ TCTCATGCGCTTATGCATGCCACGCACGGC 2860258 30 100.0 31 .............................. CGAGACCTCACGTTGCGGCATTATCCGTTAA 2860319 30 100.0 36 .............................. GAGGTGCGTCGCAATGGTAGAGCTTGAATTTCTTTT 2860385 30 100.0 37 .............................. CCGTACAACTCCATCAAATTAGGTTCAGCAGATTCCG 2860452 30 100.0 36 .............................. AACTTCGGCAATTAAGTCTCTTAACTCCTTATCTGT 2860518 30 100.0 30 .............................. CGTCACGGCTTCTGCATCAGGCGAACTTCC 2860578 30 100.0 37 .............................. TAAGGGAGAGCCTGTTTAGGCTCCCCCTCTTCCAGTC 2860645 30 96.7 37 ...C.......................... TAAGGGAGAGCCTGTTTAGGCTCCCCCTCTTCCAGTC 2860712 30 96.7 34 ...C.......................... CCAGGCTAACAAAGAGATGACGCTCGTACACCGC 2860776 30 96.7 37 ...C.......................... CCCGGCCAAAATGCGTATATAATGAAGCAAAAACCGC 2860843 30 96.7 38 ...C.......................... CTCCACCGACATAGCGGCGGCAATGGAGATTCTTGAAA 2860911 30 96.7 40 ...C.......................... ACGCGAGCTGGGATACGGTTAATGGTGAGGAAGTCCGCAC 2860981 30 96.7 35 ...C.......................... ATGGTCAAGCATTCGTGCCCGACCAAAAGCTGGGG 2861046 30 96.7 37 ...C.......................... CCTGGGCGGCCAGCTGGTGAAGCGGGAGAAAAACTTG 2861113 30 96.7 34 ...C.......................... CCAGGCTAACAAAGAGATGACGCTCGTACACCGC 2861177 30 96.7 35 ...C.......................... CAACAATGCCAACGATTACAGTGGCAGTGTGCACC 2861242 30 96.7 35 ...C.......................... AGGTTTGCTCACTACGTTGAATAGAGTTTTAGGGG 2861307 30 96.7 37 ...C.......................... TCTTCATCATCCCAAAACTCCCAATCGCCAAATTGAA 2861374 30 96.7 36 ...C.......................... GAGTGTTCTTGTATCTGCCGAGCCACATCCCTACGG 2861440 30 96.7 38 ...C.......................... TCTCCATCTTTCACGCTCAGCTTCAGCGCCAGGGCAAT 2861508 30 96.7 37 ...C.......................... CAACGCAGCGGCTTCGCCTTCCGCGCGGGGGGGATGG 2861575 30 96.7 35 ...C.......................... CCCGGTGCCTCAATTCCCCGGCTCTCATTACAACC 2861640 30 96.7 37 ...C.......................... TTGTGCCATAATTGCATTCCGCAATAAGATGATAAAT 2861707 30 96.7 35 ...C.......................... TATCTGTGATATACCGTTTCGCCTAAACTGGCATA 2861772 30 96.7 38 ...C.......................... CCTTCCCATACATACTCTTTATTTGTTCTATCAACTCA 2861840 30 96.7 29 ...C.......................... CCACGTAACAGGAATGCCTCTCGTACTAT 2861899 30 100.0 37 .............................. CCCGAGAAGAGCAAGTCCCTTCTCGAGTTCTCCTTCC 2861966 30 100.0 36 .............................. GAGGTGCGTCGCAATGGTAGAGCTTGAATTTCTTTT 2862032 30 100.0 32 .............................. CAGATACGTGCAATGTAGAGCTGAAGTTCTCC 2862094 30 100.0 34 .............................. CCGGCTACCTCCGTCAATAGGCTTCAGAGTTCGG 2862158 30 100.0 31 .............................. ACTTCAGCAGATCAATCCAACCGATATCTGC 2862219 30 100.0 35 .............................. CAGGACAAAGACGTAGAGTGGAACGGGGTGCTTAA 2862284 30 96.7 37 ...C.......................... TAGCCCATTTCCCTAAGCATTTCTTCCCCCTGGTTTA 2862351 30 96.7 36 ...C.......................... AGCCGCTTATGTACAGCATAGGTGTCCGTGTAAAAG 2862417 30 96.7 36 ...C.......................... GTGGAGTCGTTCAGGAACAAATAACCGCCAAACCTG 2862483 30 96.7 35 ...C.......................... GCCGGGCATGCCGAGGGGGAGATGAAAGCCAATGC 2862548 30 96.7 0 ...C.......................... | ========== ====== ====== ====== ============================== ================================================================================================================== ================== 66 30 97.8 38 GTTTTCAGCGTACCTATGAGGAATTGAAAC # Left flank : GGACCCAGGCTCCTCCCAGTGGACGGCTGGTGATAAATTTGAGGGGTGCTGCACCTGTTTCCGCTTCATAACGCAGGGTCTCCCCGGGCCCCAGGAACCGGTTGATGCTCTTTACTAGACGCTTTAATGCCTCCCGGTCGACCTCCTCTTCACGCCCGAAGTTGAAGAGCACTTTGGCCTTGGCGCACCTGGCCTGGGGGTCCCATTGATTATGGGCAAGCTGGATGTAGCGGACGACGGAGCCGTCTTTGTTCTTGCGCTGGATGGTTCGGATGTACATGTCTACATTATACCACATGTACCATCCATACAACAAGAGATATAACACAAAACGTGTGCCTATGCATTTTTCGCTTTTTCTCCACTCCCAAACCCGCTAACCCTTGATATTAAAGGATCGCTCTTCAAAAATTTCGCTCTGAATGCCTCGTTAGTGTCGAACTCCGGTATGAGGAATTGAAACTACTCCCAGAGCACGTACATCCGCTCACAGTCCATGC # Right flank : CCCGTAATCGAAGCAGATGCGGCTTGACCCCCTAAAATTGGACAATTAGTCTTTGTTGCTAACTATTTCATAAAGTATCATTGAATTGTTTAATCGGTTAATCGGAAGGCGGTGGCCTTGACTGCCACCCCGCAGGTGGTAGGCCAGGAACTACCGACGGGGTGGCTCCGGGGAACATGTAGGCAAGGTGTGCACGCCCCGTCGGAAAACACATTTTACCATCTCCGGGGTCCCCGGCCGTCAAGGCTTCCCTGACGGCGCCGCCCAAAGACCTCCAGGGCCCACCAAAGAACATGTTACACTTTTACTGGTTTTAACTCTACCTGGTTGTTTTTCAGCAGTTGATAGCATTCCAGCGGTGGTAAGTATTTAGTTGCTGAATGAATCCGGGTTTCGTTGTAAAAGCGGATGAAGTCGACAACCGTTGCATACGCTTCGGCATAGCTGGTAAACTCATGACGCGAGCATCCTTCGCTTCACAGGACAAACCGATATGGTAA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAGCGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTCTCAGCGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 8 2863661-2865967 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912609.1 Thermacetogenium phaeum DSM 12270 THEPHDRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2863661 30 96.7 32 ...T.......................... CGTGCTCCTACACCGTCAGTATACCATGAACC 2863723 30 96.7 31 ...T.......................... CGAGACCTCACGTTGCGGCATTATCCGTTAA 2863784 30 96.7 36 ...T.......................... GAGGTGCGTCGCAATGGTAGAGCTTGAATTTCTTTT 2863850 30 96.7 37 ...T.......................... CCGTACAACTCCATCAAATTAGGTTCAGCAGATTCCG 2863917 30 96.7 36 ...T.......................... AACTTCGGCAATTAAGTCTCTTAACTCCTTATCTGT 2863983 30 96.7 30 ...T.......................... CGTCACGGCTTCTGCATCAGGCGAACTTCC 2864043 30 96.7 37 ...T.......................... TAAGGGAGAGCCTGTTTAGGCTCCCCCTCTTCCAGTC 2864110 30 100.0 37 .............................. TAAGGGAGAGCCTGTTTAGGCTCCCCCTCTTCCAGTC 2864177 30 100.0 34 .............................. CCAGGCTAACAAAGAGATGACGCTCGTACACCGC 2864241 30 100.0 37 .............................. CCCGGCCAAAATGCGTATATAATGAAGCAAAAACCGC 2864308 30 100.0 38 .............................. CTCCACCGACATAGCGGCGGCAATGGAGATTCTTGAAA 2864376 30 100.0 40 .............................. ACGCGAGCTGGGATACGGTTAATGGTGAGGAAGTCCGCAC 2864446 30 100.0 35 .............................. ATGGTCAAGCATTCGTGCCCGACCAAAAGCTGGGG 2864511 30 100.0 37 .............................. CCTGGGCGGCCAGCTGGTGAAGCGGGAGAAAAACTTG 2864578 30 100.0 34 .............................. CCAGGCTAACAAAGAGATGACGCTCGTACACCGC 2864642 30 100.0 35 .............................. CAACAATGCCAACGATTACAGTGGCAGTGTGCACC 2864707 30 100.0 35 .............................. AGGTTTGCTCACTACGTTGAATAGAGTTTTAGGGG 2864772 30 100.0 37 .............................. TCTTCATCATCCCAAAACTCCCAATCGCCAAATTGAA 2864839 30 100.0 36 .............................. GAGTGTTCTTGTATCTGCCGAGCCACATCCCTACGG 2864905 30 100.0 38 .............................. TCTCCATCTTTCACGCTCAGCTTCAGCGCCAGGGCAAT 2864973 30 100.0 37 .............................. CAACGCAGCGGCTTCGCCTTCCGCGCGGGGGGGATGG 2865040 30 100.0 35 .............................. CCCGGTGCCTCAATTCCCCGGCTCTCATTACAACC 2865105 30 100.0 37 .............................. TTGTGCCATAATTGCATTCCGCAATAAGATGATAAAT 2865172 30 100.0 35 .............................. TATCTGTGATATACCGTTTCGCCTAAACTGGCATG 2865237 30 100.0 30 .............................. TACGAATACTACTCTTCATCCGTTACATCA 2865297 30 96.7 33 ...T.......................... ACATGATACCCAGGCGAGACGCGTTTCATCATT 2865360 30 96.7 31 ...T.......................... CGTGCCGATGTAAGACGACGAATTCCTTCCG 2865421 30 90.0 33 ...T.............T........C... TGAGCGTGCCAGCACTTCATCTCGATAGTTTTC 2865484 30 96.7 34 ...T.......................... TCATCCGGATTCTACGGATAGGTCTGCAATTTCG 2865548 30 96.7 31 ...T.......................... ACTTCAGCAGATCAATCCAACCGATATCTGC 2865609 30 96.7 35 ...T.......................... CAGGACAAAGACGTAGAGTGGAACGGGGTGCTTAA 2865674 30 100.0 37 .............................. TAGCCCATTTCCCTAAGCATTTCTTCCCCCTGGTTTA 2865741 30 100.0 36 .............................. AGCCGCTTATGTACAGCATAGGTGTCCGTGTAAAAG 2865807 30 100.0 36 .............................. GTGGAGTCGTTCAGGAACAAATAACCGCCAAACCTG 2865873 30 100.0 35 .............................. GCCGGGCATGCCGAGGGGGAGATGAAAGCCAATGC 2865938 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 36 30 98.6 35 GTTCTCAGCGTACCTATGAGGAATTGAAAC # Left flank : TCGGCTTCCCAGAGCTGGTTGGAAGCCGTAATGACCCGGTTCCTGGCCAGCCGGCGGGGGTGTTTGCGCTTTATTTTCCGCTGCGGCCTTAAGATATCCAGTTCCTTGCAAAGCCGGTACACCTTTTTCTTGTTAATGATCAGATGAAACTTTCGGCGCAGGCAGTGGGTTAATTTTAAGTATCCATAGGCAAACCCTTCGGCAGTAATTAATTCGCACAACCATTCTTTGACCTGTTCGTTGCTCACCACCTTGTTATCGCTGGTGAAGGTATAATGGGATTTAGGCCGGCCGCCGGCAAAGATCCTGGGTTTGGGTTGGCGCTTTAAATTAGGGTAATACGTGGAGCGGCTGATCCCGATAATCCGCAAAACCAGGGAGACTTTATATCCCAAAGAGATCCATTTTTGCGCCACGGCTATTTTATCGGGAAGGGTAGGTTCGTTTTTTTAGGAATTGAAACCGCATAAGGGATGCCGCCGCAGGTACATCTCTCGATA # Right flank : CCCGTAATCGAAGCAGATGCGGCTTGACCCCCTAAAATTGGACAATTAGTCTTTGTTGCTAACTATTTCATAAAGTATCATTGAATTGTTTAATCGGTTAATCGGAAGGCGGTGGCCTTGACTGCCACCCCGCAGGTGGTAGGCCAGGAACTACCGACGGGGTGGCTCCGGGGAACATGTAGGCAAGGTGTGCACGCCCCGTCGGAAAACACATTTTACCATCTCCGGGGTCCCCGGCCGTCAAGGCTTCCCTGACGGCGCCGCCCAAAGACCTCCAGGGCCCACCAAAGAACATGTTACACTTTTACTGGTTTTAACTCTACCTGGTTGTTTTTCAGCAGTTGATAGCATTCCAGCGGTGGTAAGTATTTAGTTGCTGAATGAATCCGGGTTTCGTTGTAAAAGCGGATGAAGTCGACAACCGTTGCATACGCTTCGGCATAGCTGGTAAACTCATGACGCGAGCATCCTTCGCTTCACAGGACAAACCGATATGGTAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCAGCGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTCAGCGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //