Array 1 815208-814700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055224.1 Pectobacterium atrosepticum strain Green1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 815207 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 815147 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 815087 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 815027 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 814967 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 814907 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 814847 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 814787 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 814727 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : TTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAATA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 825249-827437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055224.1 Pectobacterium atrosepticum strain Green1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 825249 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 825309 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 825369 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 825429 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 825489 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 825549 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 825609 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 825669 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 825729 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 825789 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 825849 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 825909 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 825969 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 826029 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 826089 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 826149 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 826209 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 826269 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 826329 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 826389 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 826449 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 826509 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 826569 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 826629 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 826689 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 826749 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 826809 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 826869 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 826929 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 826989 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 827049 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 827109 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 827169 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 827229 28 92.9 32 ........T..C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 827289 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 827349 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 827410 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //