Array 1 10186-10906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGH010000013.1 Bacteroides pyogenes strain DD33 JD45_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 10186 36 100.0 30 .................................... TAAGTTTTTTAGTTAACTTTTTCATGTTAG 10252 36 100.0 30 .................................... ATCCAGCTGATAGGCTATGGCACCGGTTTC 10318 36 100.0 30 .................................... AATCTTCATAAGTTGGTTCAAAATATTCCA 10384 36 100.0 30 .................................... GATAAGGCAAATAGGGCTGTTTTGGATTTA 10450 36 100.0 30 .................................... AGTAACAAACCTTAACCCGGGGCTTTACCC 10516 36 100.0 30 .................................... AGATAAAATAAAATGCCGCAAAAGCTATCG 10582 36 100.0 30 .................................... CCATCCTGCACGCATCAGTATACGCGTCTC 10648 36 100.0 30 .................................... TATCCTTACTTTGTATACTTATGTACCTCT 10714 36 100.0 30 .................................... TAAAGTATTCGCCTCTTATTTCTTCACATT 10780 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 10871 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 11 36 97.2 33 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTG # Right flank : TGTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACCCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCTGACGAAGAAAAGAGAAACACCGCTATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAACGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAAATGCTGAACCTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCCGCCATAAACGGTAACAAATGTTACATTCATCGCCCGGATAATGAGATAATAGAAAGCGGTTTAGAAGATTTACGTAAATTTTGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 41583-43352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGH010000030.1 Bacteroides pyogenes strain DD33 JD45_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41583 29 100.0 34 ............................. TCGCAAGGTCGAGGATAGCCTGTCGTTTTTGCTG 41646 29 100.0 38 ............................. TCCCCTGATGTTGGCTTGCTCTACAAAATAGTAGTAGA 41713 29 100.0 36 ............................. AAAAATAAACAATGGAATTATTGAGGCTAAGAAAGG 41778 29 100.0 35 ............................. ATGTTTCATTACGATAGAACTTTTTCATCGTTATT 41842 29 100.0 34 ............................. AACTCACCCGGAAACTTCTGCGGGCGCTCGGGCC 41905 29 100.0 36 ............................. GGAGATAGACACAGCGAGTGGAATTGCATCATTTTC 41970 29 100.0 35 ............................. TTGTTAACATTGTCGATTAAGAGTCTATCGCTATT 42034 29 100.0 35 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAAG 42098 29 100.0 36 ............................. TGAGTTGGTTTCTGATACTCCGTATAAATAGGCAAT 42163 29 100.0 37 ............................. TTAGCTTGTTAATTGCATTGCGGAGCGACTCTACCTG 42229 29 100.0 36 ............................. CCCTGAACTTCTCCGCTTCCGCGTTAGCTTCGTCCT 42294 29 100.0 36 ............................. AACGCAAGGAAAATCAAAGGCTTTTTTATACTCTTT 42359 29 100.0 34 ............................. AGAAATCGGCATAGGCGAGAAGTTCTATATATTC 42422 29 100.0 35 ............................. GAACATCCTGTAAGGCCTTATAGTATACACCATTA 42486 29 100.0 34 ............................. AACAACCAACTGGGTTAAAAACAACCCAAACAAC 42549 29 100.0 38 ............................. AGATGAGAGAAAGCAGAGTTCCAAAACAACTCCTCATA 42616 29 100.0 33 ............................. CAGCATTGGATGCGAATTCGATTATTCTACCTT 42678 29 100.0 36 ............................. GAGAGAAGTTATATGAGTTACTTGATGATAGCGAAG 42743 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 42806 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 42871 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 42935 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 43001 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 43066 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 43130 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 43194 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 43259 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 43324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTAAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : AAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 8173-8988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGH010000070.1 Bacteroides pyogenes strain DD33 JD45_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8173 47 100.0 30 ............................................... GCATATCAAAAATGCCGCTAATGGCAAGAC 8250 47 100.0 30 ............................................... CTTTCGCAACCTACTCTAATGCGTACCTGC 8327 47 100.0 30 ............................................... AAGCATACATTGGTATATTCCATAATCATA 8404 47 100.0 29 ............................................... AGCAACTAAAATTCTATCTAAAATAAAAT 8480 47 100.0 30 ............................................... CGTTGCTTCGACAGCCGTACCTTTCACCTG 8557 47 100.0 30 ............................................... TGAGTTGAGAATGTCGGATAGGGAGACGAG 8634 47 100.0 29 ............................................... TAAGATTGATATGGCTTCTTCTGTAGGAT 8710 47 100.0 29 ............................................... TGTTGGTAACAGATGTTACTTTAAATGTA 8786 47 100.0 30 ............................................... AGGCTTTTTCCGCCTTTTTCTCGCCCTCCT 8863 47 100.0 30 ............................................... CCAGGCGGCTGACACGTTGCATCAGGCTCA 8940 47 80.9 0 ..............C...............C.GCC.GG...T....A | TG [8979] ========== ====== ====== ====== =============================================== ============================== ================== 11 47 98.3 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTGCCGACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGAAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGGCATTGTGCCAGTAGCGAGAACGCATCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAACAAAAAATCCCGTACTTACACGGGATTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCCTATTAATCCGTTGATTATTAGTTGTCTACTCTGATTCT # Right flank : AAAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGGGAGCGTTTCTTCCAGAACTCGGGCGTCATTTCTGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCTGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //