Array 1 46673-45581 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODT01000002.1 Rhodopseudomonas pseudopalustris strain DSM 123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46672 36 100.0 30 .................................... GGATGGCGTCGCCGAGCGCCGCCATCGCGC 46606 36 100.0 30 .................................... ACCACCACGTTAGGCGTCGCCGCGTTGTCT 46540 36 100.0 30 .................................... TGATGGCGAATGCACGACTCGTCGCCGAAA 46474 36 100.0 30 .................................... CGCAAGCATCACATCCACCACATGCAGAAG 46408 36 100.0 30 .................................... CGCCGAGCGCGACCGCGTATTGGCCGATCA 46342 36 100.0 30 .................................... TCGCCGGATCAGGCGCCGTCGTGTAGGGCC 46276 36 100.0 30 .................................... TTCGCGACGATCCGCTGCAGTCCCCATTGC 46210 36 100.0 30 .................................... TGCTGCGGCCGTTGGCGAGATTGGTGATCG 46144 36 100.0 30 .................................... GCGGACTTGCTCGGGTCTGCCATGCAATGT 46078 36 100.0 30 .................................... CGGCCATCGCGAGGAGTTCGTCGAGGCTGT 46012 36 100.0 30 .................................... GGCTTTTTCGACGCGCTGCTCGATCATCTG 45946 36 100.0 30 .................................... CTAGCGATTGCACTTGTGTTGTGCGCGAAC 45880 36 100.0 30 .................................... AACGCTCCAGCGAGCACGACACAGGTCTGG 45814 36 100.0 30 .................................... CGGCGGCGCCTGCGCTCGCGCCTAAACAGG 45748 36 100.0 30 .................................... TGGCGCGACGGCGCCGTCGACCGTCATTGC 45682 36 100.0 30 .................................... GTTGAGCGGCAATCTGCAGCGCCTGGCGCA 45616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT # Left flank : CGAAGCGAGCGAACGGTCTCGAAACCGGGAACGGTTTTGGTCGGATGCACGGCGTAAAGCGCGCCGGTATAGCCGCCCTCGGCCAGCACCCGCATGGTGCGGAACCCCCATGAATTCGGTGCACCAGGAGACACACCGACCATTGCGATCGATTTCGGCTCGATCAGGGCATGGATATCGAAATCAGTCATCGCCGACACGCCAACCCCTCGCACGTTCACTCTCCCCAAAATACCGTTGCCATTTTGATAGCATCGACTGACGTTTTGTCAATCGGGGGTGGGTGGGGGTTTCCGGGGGCTGGATGCTCATCCATCCGAGTGGTCTCGGCCGTCCTCCCCCGCCTCAACAACCCCAGCAACGGTGCTGCCCAGCAGGCGGAGACGCTTCAGGAAGCAAGCACGCAGCCATCATTTGTTGCTAACGCCTGAACATCGGCCGGGCATCCTACCGATTTCCCGTGGTAGGCTTCGATCTCGAAGATCGACCAGAGCAAGTCG # Right flank : GCGAGTGAAACAAGCGGCTGAAACTGCTCTGATTTCCGCGTGATTCGACAGGCGGAAATCAGAGCAGAACCAATTGTTGAGGTGCTTTTTTCTCATTGAAGGTCGCTTCCCCAAGTAACAGCCTCATACGCGCGTACTGACGATCCGTGACCTGAAGGGTACGAACACTTCCGCGCGGCGGCAAGTTTTTCGTCACCCGTTGCCCATGTTTTTCCGCCGCATCGTCGCCACGACAAACGCGTGAATACACCGACCATTGCAGCATCATAAATCCATCGTCCTTGAGGAATTTCCTGAAGCGGGTCGCGTTGCGGCGATCTGACTTCGTGCCGACAGGCAAATCGAAAAAGACAAACATCCACACGAAACGCACCTCCTCGCTTTTCACGAATCGCGCTCCAATTCAGGCAACTCAAGAAATGCCGGCTTTTCAAACTCCAGGGCACGACAGAGACTGGCTGCGGCCATTTCCGCTGCGACTAGAAGCGACACGCTCCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 61187-58966 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODT01000007.1 Rhodopseudomonas pseudopalustris strain DSM 123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 61186 32 100.0 34 ................................ ATAACCAGGGGTCGGGCTAAATACCTTGTTCCCC 61120 32 100.0 35 ................................ ATTAAGAACATCAACACCGACGATGTGCCGCAGAC 61053 32 100.0 33 ................................ TGTGCGGTCGCGTGACGCTCCCGGGGTTCCTGC 60988 32 100.0 34 ................................ TCCAATGCAGCACAGTTTGCGGTGCCCGTGTCGA 60922 32 100.0 35 ................................ TGCACCTCGTCGAGCCTCGGGGCGTCGAGGTAACA 60855 32 100.0 34 ................................ CTTCTTGGCGCGCAGCAGCTCGGCGGGATCGACG 60789 32 100.0 33 ................................ CTCGAGGTGATCAGCCGCGTGCTCGGCGACGGC 60724 32 100.0 34 ................................ CCGCCTTCGACGCGGACATTCTCCCACGTCCCGA 60658 32 100.0 35 ................................ AGCCTCCCACGCCCTAGAGGCTGGCGGCATCGCAA 60591 32 100.0 35 ................................ AGGCGTCCGTACCAGACCGGCAACGGCTGTCCGAG 60524 32 100.0 33 ................................ TTCGTCACGCGCGCGTCGTCGTCTTCCATCAAA 60459 32 100.0 33 ................................ GCTGTCGACGATCGGTATCCGCACCACCCGCGG 60394 32 100.0 34 ................................ GGTTGCACAGCTTTGACGCTGAGGCCGAGCCGAT 60328 32 100.0 34 ................................ TTGTCGCCCTTGTCCTCAAAGGCCTGCAGCCCGA 60262 32 100.0 34 ................................ GAAAACGCGGCCCTTCAGAATCTCACGGGGCCGG 60196 32 100.0 34 ................................ ACCGCATGGGTGCTGGACACGTCGGCGTTGCGGG 60130 32 100.0 35 ................................ AAGGCCATCTTGCTGGCCTTGGGCATCAACGCCGA 60063 32 100.0 34 ................................ CGACGTTGAGTTTTGCCTGCCACTTTTGCAGCCT 59997 32 100.0 34 ................................ TGCGCCGCCGACCATCTGACGCCCGCCGAGCAGC 59931 32 100.0 34 ................................ CGCGCCAAGTCGCCCGGTTACACCGGCACCGGCG 59865 32 100.0 34 ................................ TCGACCAGGCGGATCACGTCGCCGCCGTCATTGC 59799 32 100.0 36 ................................ ATCGAAGGCGACGGCCCGGACTATCTGTGCTGCGGC 59731 32 100.0 36 ................................ AACGAATACGAAGCCGAACGCCGCCGGGCGGCCGAG 59663 32 100.0 34 ................................ TTTTTATCGTTGTGTATCATTGCTAATACGCATT 59597 32 100.0 33 ................................ CCTGAAGCTCAAGTGCTCGCTCAGCGCTGGCGT 59532 32 100.0 33 ................................ ATTCTGTCCAGCCTATTTTAGGCTATGGCCCGT 59467 32 100.0 35 ................................ CGCAAAACCTGTTGCCCGATACGGCTTATGAGGCA 59400 32 100.0 35 ................................ TGTTCGTCGAGGCAGCGATCACGACCGATCTCGCC 59333 32 96.9 35 ........................C....... TTCTACTCGGCAAAGGCGTCCAAAGCCGACCGGGC 59266 32 100.0 34 ................................ TTCAAGCAGTAGGGCGCATGGGCGCACGTCTCCC 59200 32 100.0 34 ................................ CATGGCGTCGGCGATCTGGCGGCGGGACTCGGCG 59134 32 100.0 35 ................................ TGCACGCGCATCGAGACCGTTACCGGCGTGCCCTG 59067 32 100.0 37 ................................ TGCCAAGCCCGGATGGCGTCGCTGTGCGCGTCGAAGA G [59050] 58997 32 90.6 0 ...A....................G...G... | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.6 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : GCCGAACGCGAAGCAAGAGGCCTGCGATGCTCGTCCTAGTGACCTACGACGTCCGTACCAGCGAACCCGGCGGTCAAGCACGGTTGCGGCGCGTCGCCCGGGCGTGCCAGGACTATGGCCAGCGCGTGCAGTATTCCGTGTTCGAGATCGAAGTCGATCCCGCGCAATGGACCGCGCTGCGATCCCGGCTGGAAAGTCTGATCTCGCCGAAGCACGACAGCCTTCGATACTACTTCCTGGGCTCCAATTGGCGCCGACGCGTCGAACATGTGGGCGCCAAGCCGGCAACGGATTTCGGCGAACCGCTGATCGTCTGATCTGGAGCGCGAACCCAGAGCGCACGCGCAGGAGTCGGAACCTTCGCACCGGACTAAACCGCCGTGATTCAAGATGCTTATGCGGCCAGCGGCATTTCACGACGTGGTGCGCCTGGCCATAAGCTGACGTTCGCGCAAACCGTGCGATTTCACGTGGCGTTGCAGTCGGCTATTGCTACTGAC # Right flank : TACTGGACGCTGCATGTCGGCGTGATGCGAAACAATCTAACAGGGACGGAATGTCGGAGAGGGAATGACGCGGGCGTGGGGAGCGTCTGTCCTCGTCCGAAGGCCGCTGAAGTCTTACGATCGCTCGCAAAGGAGATCGTCCTGACGCGCAGGATGATGAATTGAAGATCGATGTCCGAGGCGATCTCGCTGGAATCCTTGCGATTCCTCAAAACGAAAACCCCGGCCACTGGGACCGGGGTTTCGCAAGTCAACTTGGTTGCGGGGACCTGCAACCATCTCAAATTGTTGTTTGAGACGGCGGCCTGAACGACTCTTCTCCCGCGGAGATTACGTCGTAGCTTCATTAGCTCTGGGCCACAGCCCTGCCGATGCATCCCAACCATCAAACTCGATCTGAAGGACCATAAAGTTTCCCAGAACTCAGTCCTGCACCACGGGCGCAGGAAGCACTCAGTAGGCATCCTTGGCAAATGACTCCTTGACCTTGCGTGCGTAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //