Array 1 517-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01000325.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_325_length_5174_cov_4.71733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 516 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 455 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 394 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 333 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 272 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 211 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 150 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 89 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 190-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01001030.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_1030_length_206_cov_2.29801, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 189 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 122 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATTTGTCAAATAAAA # Right flank : GTTAAATCCATATACGGGCCTTGCGGGTTTGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1047 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01000635.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_635_length_1089_cov_2.83462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 62 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 123 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 184 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 245 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 306 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 367 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 428 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 489 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 550 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 611 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [653] 653 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 714 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 775 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 836 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 897 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 958 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1019 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01000768.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_768_length_376_cov_2.5296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 80 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 141 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 202 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 263 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTTGCCGGGGACCGCCCG # Right flank : TGACGCTGGTCTATACCGGCAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01000636.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_636_length_1086_cov_3.66731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 106 29 96.6 32 .................G........... CGTTCATCGGCAGCGTCACGCAATATGAAGAT 167 28 86.2 0 ...............A..A.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 33 GTGTTCCCCGCGCCAGCAGGGATAAACCG # Left flank : GGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 225-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSV01000883.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF826 NODE_883_length_266_cov_1.56398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 102 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGTTAAATCCATATACGGGCCTTGCGGGTTTGC # Right flank : GTTGCAGGGCGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //