Array 1 161777-161390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH941057.1 Zymomonas mobilis subsp. mobilis ATCC 31822 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 161776 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 161716 28 100.0 32 ............................ GCCGACAGTAAAGGTAAAAGGGTTTTAGCTGT 161656 28 100.0 32 ............................ GTGAAGATATTAGCTACGATATGACAGTTTTG 161596 28 100.0 32 ............................ AGCCCCTACTTTGATAGGGTCACCCTTTTTCA 161536 28 100.0 32 ............................ TTGCACGGCAGGAGCATTTTATGGCAGCAAAC 161476 28 96.4 32 .............C.............. TTTACACTACGGGCAATAATCGTTCTCGGTAT 161416 27 85.7 0 .............C.......A.C-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGATGCCGCCGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGACTCAAAGGCTCGGCGAGCTGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACGCCGCCTCAATTTTTGCCCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCTTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : TTATCAAAACCGATGCCGATCATATCCCCACAGGCAGCCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTATACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAGAGCAAACGGCCTCACGCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCACTTTTCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTGCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 958419-958933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH941056.1 Zymomonas mobilis subsp. mobilis ATCC 31822 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 958419 28 100.0 32 ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 958479 28 100.0 33 ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 958540 28 100.0 32 ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 958600 28 100.0 32 ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 958660 28 100.0 32 ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 958720 28 100.0 33 ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 958781 28 100.0 34 ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 958843 28 100.0 32 ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 958903 28 89.3 0 ............G.............TT | GTT [958922] ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAAACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATATCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAATATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCGATTCAATATGTTACATATGAGCATATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTAGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73098-73746 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSR01000025.1 Zymomonas mobilis subsp. mobilis ATCC 31822 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 73098 28 100.0 32 ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 73158 28 100.0 32 ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 73218 28 100.0 33 ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 73279 28 100.0 32 ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 73339 28 100.0 33 ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 73400 28 100.0 33 ............................ ATATAGAAGATTTATCAGATACGTTGAGAATAA 73461 28 100.0 170 ............................ AAATGCAAGCAGAAAATGCGAAATATCAAGCCGAAGAAGATAGAAAAGCCGAAACTTTGGCTCTTGGAAAAGCTAGATCAGAAGTAAAGAATTAACCTAATCCTTGAGAAGATTCAAAATCTTTTATAAATACTGATTTTTAAAAATAAAAAGCTGGAAATAATCCACAT 73659 28 100.0 33 ............................ ATCCGCAATTTCTGGAACATGATCTTGCTGACT 73720 27 82.1 0 .............T......A..-.T.C | ========== ====== ====== ====== ============================ ========================================================================================================================================================================== ================== 9 28 98.0 50 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACAAAAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTGAAAGGCCTATTCCTTTTGCAGATGAGACAGTGAGAATGAGGTTTTTATGGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTTGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCTTCGGTACGTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGATTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.73, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //