Array 1 70177-71404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEC01000017.1 Pasteurella multocida strain 2450PM isolate swab isolate 1 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70177 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 70237 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 70297 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 70357 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 70417 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 70477 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 70537 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 70597 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 70657 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 70717 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 70777 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 70837 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 70897 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 70957 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 71017 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAC 71077 28 100.0 32 ............................ TTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71137 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71197 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71257 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71317 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 71377 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96401-91331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEC01000019.1 Pasteurella multocida strain 2450PM isolate swab isolate 1 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96400 28 100.0 32 ............................ TCAAAATCCTATCTAGATCACAAATCGAACAT 96340 28 100.0 32 ............................ ATTCAGCGTAGCTTGTTGGTGACCCTTTGTAA 96280 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96220 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 96160 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96099 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96039 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95979 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95919 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95859 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95799 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95739 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95679 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95619 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95559 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95499 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95439 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95379 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95319 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95259 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95199 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95139 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95079 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 95019 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94959 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94899 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94839 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94779 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94719 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94659 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94599 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94539 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94479 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94419 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94359 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94299 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94239 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94179 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94119 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94059 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93999 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93939 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93879 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93819 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93759 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93699 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93639 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93579 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93518 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93458 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93398 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93338 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93278 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93218 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93158 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93098 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93038 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92978 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92918 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92858 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92798 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92738 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92678 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92618 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92558 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92498 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92438 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92378 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92318 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92258 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92198 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92137 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92077 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92017 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91957 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91897 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91837 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91777 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91717 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91657 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91597 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91537 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91477 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91417 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91357 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //