Array 1 146383-145682 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJV01000003.1 Escherichia coli strain EC_104 NODE_3_length_336869_cov_40.725424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146382 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 146321 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 146260 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 146199 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 146138 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 146077 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 146016 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 145955 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 145894 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 145832 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 145771 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 145710 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163392-161899 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJV01000003.1 Escherichia coli strain EC_104 NODE_3_length_336869_cov_40.725424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163391 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 163330 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 163269 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 163208 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 163147 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 163086 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 163025 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 162964 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 162903 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 162842 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 162781 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 162720 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 162659 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 162598 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 162537 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 162476 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 162415 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 162354 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 162293 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 162232 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 162171 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 162110 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 162049 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 161988 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 161927 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //