Array 1 5325-6817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKL01000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5386 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5447 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5508 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5569 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5630 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5691 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5752 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5813 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5874 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5935 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5996 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6057 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6118 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6179 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6240 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6302 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6363 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6424 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6485 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6546 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6607 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6668 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6729 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6790 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65484-63519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKL01000084.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65483 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65422 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65361 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65300 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65239 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65178 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65117 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65055 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64994 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64933 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64872 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64811 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64750 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64689 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64628 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64567 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64506 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64445 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64323 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64262 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64200 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64097 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64036 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63975 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63914 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63853 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63792 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63731 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63670 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63609 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63548 29 96.6 0 A............................ | A [63521] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //