Array 1 21716-19804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQS010000006.1 Longibaculum muris strain 1001302B_160321_H8 NODE_6_length_136452_cov_20.242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 21715 31 100.0 35 ............................... TTTGAAACAAATGAAGTCATTCAAGCAGGCTCACG 21649 31 100.0 36 ............................... TCTAAATTCATTGATTTGTAAAGTTCCAACTAAATC 21582 31 100.0 37 ............................... AATCGTTCTAATACGGTGCGTTTGCTTTTAAAAGAGC 21514 31 100.0 36 ............................... AGAACAAAATGATTTGTATAGTCTAATTCACCATTG 21447 31 100.0 35 ............................... TCTACGAAGATACATATCTTAAATATGTCAAGTTT 21381 31 100.0 36 ............................... ACTTCTTAACCACATATAAATAAGAATAACACACAA 21314 31 96.8 36 ...T........................... TTAGCAACTGCATTAAAGAAAAATCTTTCAAAATGG 21247 31 100.0 35 ............................... TAAGGTAGGGGTCGTTCATACATGACGCTCGGATA 21181 31 100.0 36 ............................... GCTGTATAAACAGAAGTAGCTGTGACTGTTAATTCT 21114 31 100.0 37 ............................... GAGTTAATGGAATTAATAAAAAAGAACCGCGTTGACG 21046 31 100.0 37 ............................... TATCAAGTTGTTTTAATGGATCAACATGATGATGAAA 20978 31 100.0 36 ............................... GGAAGAAACGATTAGGATCGTAGTCCTCGATTGTTT 20911 31 100.0 36 ............................... TTACGTGAACAGTTTTCTGTTGTTTGCAAGTGCAAT 20844 31 100.0 35 ............................... TAAATTTGACCGTCGTTACCTTCGTCAATCTTAAC 20778 31 100.0 36 ............................... GTGCAAGCTTCACAATAGATGTTACATACAGTGGTA 20711 31 100.0 37 ............................... CATGAATGCTTGTTATTTCTCTTAAATATACACTTAA 20643 31 100.0 36 ............................... CTTTCTGTTTGCATCATCTTAAAGATAAATGACTCT 20576 31 100.0 37 ............................... ACGTACCAGGAAAAACCATATGACCATCATTATCAAA 20508 31 100.0 36 ............................... GGTGCAACTAATTTTCCAGATTTATCAATAGCTTTC 20441 31 100.0 37 ............................... TTTGAATTAAAAGGCGAAGAAATCGGATTAGAAAATA 20373 31 100.0 35 ............................... GATTTCTTGACTTCTGCTTCAATGTTATGAGCTAG 20307 31 100.0 36 ............................... TTGGTCCTGTTGCGCCAGTGTCACCTTTGTCTCCCT 20240 31 100.0 36 ............................... ATATATGAGCAAAGAATGGCAAGAAGCTGTGTCTTT 20173 31 100.0 37 ............................... GTAAACTATCTTGTTAATAAGCAAACTGAATTAAACG 20105 31 100.0 36 ............................... TAGTATGCTTGCTGCTTTTGTTCTTTTTGCTTCTAT 20038 31 100.0 37 ............................... TTCACACTAACTAATGGTTCTATATCTTTCCATTCTT 19970 31 100.0 36 ............................... GTAATTTCAGTCATTGAACTTGTTCCATCATCTGTT 19903 31 96.8 38 .......G....................... GGTTCAGGGAAATCGTTTAGTGCTAAAGCAGAAGCAAC 19834 31 93.5 0 ...............G..........C.... | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.6 36 ATTCATAATCTAACCATATTGGAATGTAAAT # Left flank : AAATGTATATTTTTAGTTAAAATCACATGTTCTACATCTAATACAAAAGAAATTCCATCAATAAAATCTAATGTTCTTACTAAGTATTTTTCTTCTATATTACATATAACGATATCGTTTTGTTTAATATCTTCGCCTACCTTTTCTAAAATATTATAATCATTGATTTCGTATTTTTTTACAGTAACTAAATATTTTTCATCTTCATCAAATTCTTCATTATCAAGTAACCATTTTTTTAATTTATCCATTTTTATTCTTCCTTTCAATAATACATTATACTTGTTAAAAGAAAAAAATGTTCTCTTCTAAAGCGAATTAAAACGTATATCTATAAACATATCTGTCGATTTCAATTATGTAAAAATTACCAGAGATTGACACAACTCATTTACAAAATTTATAAAATTAATTTTATATAAATACAAAAGGCGTAGATTATACAACTATCTTATGCTATAATTTAATTGTTTTTAAGAGCAATTACTTTGATTTCACGG # Right flank : AACCATATACCATCCTTATTAGATTCTCCAGCAATCGATATGTAGTCTAAGCTAATTTAAAAAAAGAAAAAAGATATAACTATACTTTACCTCTAAAGTAATTATATCTTTTAATTTTGAAATTTAATTATCCATTAATTTGAGCACTTTGAATAACCAATTGACTTGCTTTTACACGATTATAATCATGTCTTAATGCTTCTTTATTAATTTGTTCTAAAACTTGCTCAACTGTCATTTGATTTTGATTAGCAATAGCTTCAATTTGTTGATCAAGTTCTTCATCAGATGTTGTTAAGTTTTCAACTTTCACAATTTCATCAATAATAGCTTCAAATTTTGCTTGTTGTTTTGCAGCAGGTTCTAATTGTTGACGTAACATATCTTCACTAGCACCTGTCATTTGTAAATATTGTTCCAAAGTCATACCTTGTCTAGCTAATTCATTACGAAGATGATTCATATGTTCATTCATTGCTTTTTCTACATCTTCATCACCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCATAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 39238-33348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQS010000006.1 Longibaculum muris strain 1001302B_160321_H8 NODE_6_length_136452_cov_20.242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =========================================== ================== 39237 27 100.0 40 ........................... AAACCTAAGCCAATAAAAACATTTTGTGAAAGAATTTTAT CC [39220] 39168 27 96.3 40 ..............A............ GAATAGGGTTGGGCTTCCCATAATGTAGTTGGTTATGTCT 39101 27 96.3 41 ..............A............ GAATTTGATCCTTCAATATCTCAACAGGATACGTTAACAAG 39033 27 96.3 41 ..............A............ GAATCATCATTTTCGAGTTTTGGATGTGATAATAATTATGC 38965 27 96.3 39 ..............A............ GAATGATTTAGAAGATCTAAGAGGTTCAATTTGTTTAGC 38899 27 96.3 41 ..............A............ GAATTAATGTCTGGCTGTTTTATGCTTTCTTATCGTCAAGA 38831 27 96.3 40 ..............A............ GAATAGTTTGCCCCCTGGTCTCTTTGTTTCGACAAATACG 38764 27 100.0 39 ........................... AAACTAGTCAACTACTTGTTTTTCAGTAAGCCCAACATA CC [38747] 38696 27 100.0 42 ........................... AAACGGTTCATTTTTGACAAGGGAACAACTAGAGAAGATATC TC [38678] 38625 27 100.0 41 ........................... AAACTAGGTAGATATTATTATGTCGAGTCAAAGACTCCACA CC [38608] 38555 27 100.0 41 ........................... AAACTTTTATCTATTCTTTATAATTTTTTGGTTCTGTGTCT CC [38538] 38485 27 96.3 42 ................A.......... AAACCGACAGGGTTTGATTTATTGTCGGTTACACAATCAGCA CC [38468] 38414 27 100.0 40 ........................... AAACTAATCCATTTAATATGCTAGTTCTTACGATTGACAA CC [38397] 38345 27 100.0 40 ........................... AAACGCAGGCATTTGTAACTATTAATCAGCTCAATTCTGA CC [38328] 38276 27 100.0 40 ........................... AAACTGATAGAAAGATTGATGACGTATGTATTCCATTATA CC [38259] 38207 27 100.0 41 ........................... AAACTGACGATTTTCATTTCGTAGGTGGTACAACGAAAGTT CC [38190] 38137 27 100.0 39 ........................... AAACGGTTATGTTGCGCCTACAACAGAATTAAGTTGGAG CC [38120] 38069 27 100.0 33 ........................... AAACCTAACACCAATCATAATTGTAACACCAAC CC [38052] 38007 27 100.0 40 ........................... AAACTGACAGGAGTAGTCACGTTTAATGACTTATATGAAT CC [37990] 37938 27 100.0 41 ........................... AAACCTAATCTTAATTCTTTACTTAATAAGTTGCTTAATTA CC [37921] 37868 27 100.0 40 ........................... AAACTAGATACCTACAAAGATGATTGGAAATATTCTAAGC CC [37851] 37799 27 100.0 40 ........................... AAACAGATAACTATGAAAATGAATTTATAGCAAAAGAAAA CC [37782] 37730 27 100.0 40 ........................... AAACTTTAATAAACGTGCATTGGATACCATCTTCCCAAAT CC [37713] 37661 27 100.0 40 ........................... AAACGGACTTTTATGACATGATATTGGTCTCTTGTGACAA TC [37643] 37592 27 100.0 40 ........................... AAACTCCAATAAAACCACTATCTTGATATGTATCTCCTAA TC [37574] 37523 27 100.0 41 ........................... AAACTTGCAGATAATTATATGTATCAAAATAGGCGTTTCAA TC [37505] 37453 27 100.0 40 ........................... AAACCGCATAATTTCCTACATTCTTCATCTGCATATCAAA TC [37435] 37384 27 100.0 39 ........................... AAACTGAAAAATGCAAATGAAGTTCTCTACAACTGGTTA TC [37366] 37316 27 100.0 39 ........................... AAACGGTTCAGCACTGTCGGCTGTTACAAGTTTATTGAG TC [37298] 37248 27 100.0 41 ........................... ATACTGTTCAGTGTTCAGTATTTGTTATTTTTCTAATAATG TC [37227] 37178 27 100.0 40 ........................... ATACAAAGGAAAATGCAATGGAACATGGTTCTAATTCATA TC [37157] 37109 27 100.0 39 ........................... ATACTTTAGATAGTACATTGACTGGTAAAAAAGTTACAA TC [37088] 37041 27 100.0 40 ........................... ATACTACATGATTGGATATTGTATAGCACAATTTATACAA TC [37020] 36972 27 100.0 40 ........................... ATACCCAACTCAACATTTGAAGAACTTACCTCATTTGAAA TC [36951] 36903 27 100.0 40 ........................... ATACTGGTTCTCTTTGTTCATTTTCCCAATACGATAATGT TC [36882] 36834 27 100.0 40 ........................... ATACCGCTCGCATTCTGCTGAGCAAGGGGATATGGGGCCC TC [36813] 36765 27 100.0 41 ........................... ATACCATTTAGCCGTGATACAGACATTGGATTTTATATCTA TC [36744] 36695 27 100.0 42 ........................... ATACCAAGGTGTCCTCCGACAAAGCCGCCAATGTCTTTAATA TC [36674] 36624 27 100.0 40 ........................... ATACTAGTATTACATCCGATTTAGGTATCCTTTTACCTGT TC [36603] 36555 27 100.0 39 ........................... ATACAGAAAGGAGATTATAAAATTTGGAAGGTTTAAAGA TC [36534] 36487 27 100.0 39 ........................... ATACGTTGTTGAAGAAGTTGAATTTAATGATGATGGAAT TC [36466] 36419 27 100.0 39 ........................... ATACCTTTAAATCGTCATGGTAATGGTAAGATGATTTAC TC [36398] 36351 27 100.0 39 ........................... ATACCCTAAGATTTCTCTTTTTGGCACTAATTTATTTAA TC [36330] 36283 27 100.0 41 ........................... ATACCTAATCTTAACTCTTTGCTTAATAAGTTTTTAAGTTA TC [36262] 36213 27 100.0 40 ........................... ATACAAGATTATATCGAACATATGAAGATGAAAGTCTTGA TC [36192] 36144 27 100.0 39 ........................... ATACTTTAACTGTTCTCGCTTCTATTATTGGTGTCGGTA TC [36123] 36076 27 100.0 41 ........................... ATACTAACTAGACTTTTTTTAGAAAGGAGTGTTGTTTATGA TC [36055] 36006 27 100.0 37 ........................... ACATTTTTTCTTAGGCTTTTTCGAAACTCTCTGGAAT TC [35989] 35938 27 100.0 41 ........................... ATACCTTTTAATACTCAAACTTCTAACGCTAGTTTTTACAA TC [35917] 35868 27 100.0 40 ........................... ATACGTATGGGCTTTGTGCTTATGTGGCTCGGTGTTAGAA TC [35847] 35799 27 100.0 41 ........................... ATACAGTTATGGTAATAAGGTAAATGATTATTATGTTTTTA TC [35778] 35729 27 100.0 40 ........................... ATACTGTAAAGCGTATATATCGTTTGTTTTATTATTTTAA TC [35708] 35660 27 100.0 37 ........................... ACATAGAAAATGTATTTAAAACCTTTATCTTGACAAG TC [35643] 35592 27 100.0 39 ........................... ATACTTTCTGTAAGCTCACCTTGCCCTAGACAAATGCAA TC [35571] 35524 27 100.0 40 ........................... ATACGAAGAAGAATATCGTTGAGATGGCGTGTGCAAAAGG TC [35503] 35455 27 100.0 40 ........................... ATACCGGTGCCTATTTATGCTGCTATAACAGGAGCTACAA TC [35434] 35386 27 100.0 41 ........................... ATACAAACAATATCTAGAAACAATGAAAACATCAATGAAAG TC [35365] 35316 27 100.0 41 ........................... ATACGAAAAACGAAATGAGTAAAGAAAAAAGTAGTTACAAT TC [35295] 35246 27 100.0 40 ........................... ATACCGAATATACAAAGTCCAATAGGTCTAACAAGTATAA TC [35225] 35177 27 100.0 40 ........................... ATACTGATAAATTATTTGATAAAGATAACTTAAAATTAGT TC [35156] 35108 27 100.0 41 ........................... ATACTTATATATCAGGATGAAGCAATCCCGTTTAAATATGA TC [35087] 35038 27 100.0 41 ........................... ATACCAGATAGTCTATTACCTTTTGCTTTCCTCTTTCATTA TC [35017] 34968 27 100.0 41 ........................... ATACTTAAACCAGGATCTAAACCAAAGAATACTGATCCTAT TC [34947] 34898 27 100.0 41 ........................... ATACTTAAATTTATTGTTCCTTATTCTCAAGCTGTTAGTTA TC [34877] 34828 27 100.0 37 ........................... ACATTAGTTTTAATGATTTAATACAAAGACTTAAAAA TC [34811] 34760 27 100.0 41 ........................... ATACAATGTGTTATCTTAAGTTATAATTGGAGTACGATAAA TC [34739] 34690 27 100.0 41 ........................... ATACTAGTTTCTGTCAACTCAGAATATCCTATTCCAAAAAA TC [34669] 34620 27 100.0 40 ........................... ATACTATTAAAAATGATAGTCGATTAAAAAGACTAGATGA TC [34599] 34551 27 100.0 40 ........................... ATACTGGTACTCAAGAAGAAAAAGCATTATTTGGGTTCAA TC [34530] 34482 27 100.0 41 ........................... ATACAATAGACAAAACACCACTAGAATTTGGAATATTCACG TC [34461] 34412 27 100.0 39 ........................... ATACTCTTTTAGTTTCAAATTTGTAACAAGTTTACACAT TC [34391] 34344 27 100.0 39 ........................... ATACGGCCATGCTCAGCCAAATTATCTTTTTATGAAATT TC [34323] 34276 27 100.0 39 ........................... ATACGCATTTTTCCAGACTCTTAATGCATTGGCCATGTC TC [34255] 34208 27 100.0 41 ........................... ATACTTGTCTTGGAAGCAATTGGTGTACCAAGCATGTATAG TC [34187] 34138 27 100.0 40 ........................... ATACAGAATGGAAAGATATAGAACCATTAGTTAGTGTGAA TC [34117] 34069 27 100.0 39 ........................... ATACTAATTAACAGCGCTAAGAGTCTTACCACTACCTTG TC [34048] 34001 27 100.0 40 ........................... ATACGAATAAAGATTTAACTCATACAGTCGGAGAGAATGA TC [33980] 33932 27 100.0 41 ........................... ATACTAATACCAACAAGACCATTAACCTCCATGCCCTCATT TC [33911] 33862 27 100.0 43 ........................... ATACTTTTGAGATGATAGTTGGTAAACTTGATACTTTGAATAC TC [33841] 33790 27 100.0 39 ........................... ATACTGTTGGTATAACTATAAGAATGTTGTGCGTCTTTT TC [33769] 33722 27 100.0 38 ........................... ACATAATAATCTGCTATTTTTATTAATGTTTCTATATT TC [33705] 33653 27 100.0 40 ........................... ATACAGTTTAGTGATTCTAATTTTACAAATCTTGTTACAA TC [33632] 33584 27 100.0 39 ........................... ATACCTATAAGGCATATTTGTCCTAAAGTCAAGTGTTTT TC [33563] 33516 27 100.0 41 ........................... ATACTGTTTTTGACTTCTGGTAACCATCCATGTTTTTGTGT TC [33495] 33446 27 100.0 41 ........................... ATACCTGTATCAAAATCAATATATGCTTTAGGGTCTTGCAT TC [33425] 33376 27 100.0 0 ........................... | TC [33355] ========== ====== ====== ====== =========================== =========================================== ================== 86 27 99.7 40 ATTTACATTCCAATTTGGTTAGATTAT # Left flank : ATATATTTCATGTTTAATATCGTTGATTTATTGACACGGATAAATTGTTGATCTAATTGTTCTTCTATTTGATAGAGCCATAACGGTGATTCATAGCATTCTTCTTTTGTATAGATGAATGTTTTTTTATCGATTAATTCTATATAATAGATAGATTCTATTTGTATAAAATATTTTTTATCTCTTTTATAGCCAATAATTTTTGTATTCATTGTATTGATTAATGTTAAGACTTTTTCTTTTTCTTCATATGTTTCAAATTCTATTTGTAAAATTAACAGATCTTCATTATCTTTTATTCTCATCTTTTATCTCACTCCCTACTTGCATTATAAACATATATAATGGATTAATCTATAAAAGAAAACCCAGTTACTTAAATAAGTAACTGAGTTACATCGTGTTTACAATTTCAAAAAACAGTTAAATAAACTCTCATTTTAATTTCTAGTTAGATTATATACTCATCTTTTTGGTATTCGTTGTGTTTGTGGTATGTA # Right flank : ATACCCGTTAAATATCAAAATTATTGATAAGAAACAATTACATTATAACATTCTATTCCAACAGTATCCATATTTTAATGATAAAAACAAAATATATTTTTTATTTATAGAAATATATCCTGTCGAACTCCAATATTTTTTACATAATGGAGTTCGACTATTTTTAATTTCTTACAAAAACTGATCATCTTCGTCTTGCTTTCTAGTTATAAACTCCTTTTTCATCCATACATTGCTTCTTCCGGAAAATACTAAACATGAATCAACATCTTTTTCTAAATATTTTTTTAATTCAAAAGTTAATGCAGCATATTGTGCTCTATCCAATTCACCCTCAAATACTGAATTTTGTATATGTCTTAAGTATTTTTTACACGTTTTAAATACAAATCTCTGCCTTTTAGAATAATTACCCTCTTGCTTAATATCATATACTACTATTAGATACATATTACCACCATATTTTAAATCCTTCATAATTTTTTTCATTTATTATATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATTTGGTTAGATTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [58-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //