Array 1 65844-64193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNHZ01000018.1 Mycobacterium tuberculosis strain Bir 272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================================================= ================== 65843 34 100.0 43 .................................. CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGTGT 65766 34 100.0 45 .................................. TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAAGT 65687 34 100.0 38 .................................. GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGGGG 65615 34 100.0 40 .................................. TCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGAGG 65541 34 100.0 27 .................................. CTTGAATAACGCGCAGTGAATTTCGCG Deletion [65481] 65480 34 94.1 39 GA................................ ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAGGG 65407 34 100.0 40 .................................. TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCAGG 65333 34 100.0 40 .................................. ACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGCGG 65259 34 100.0 27 .................................. CTTGAATAACGCGCAGTGAATTTCGCG Deletion [65199] 65198 34 94.1 39 GA................................ CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCGGT 65125 34 100.0 71 .................................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGT 65020 34 100.0 38 .................................. CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGT 64948 34 97.1 38 ....G............................. TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGG 64876 34 100.0 42 .................................. GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGT 64800 34 97.1 38 .C................................ TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGG 64728 34 100.0 38 .................................. ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCAGG 64656 34 100.0 41 .................................. ACATCCCACGCGTTACCGCTGGCGCGCATCATTCATCGAGG 64581 34 100.0 38 .................................. TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGG 64509 34 100.0 38 .................................. ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCAGG 64437 34 100.0 42 .................................. ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGT 64361 34 97.1 40 ................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGG 64287 34 100.0 27 .................................. CTTGAATAACGCGCAGTGAATTTCGCG Deletion [64227] 64226 34 94.1 0 GA................................ | ========== ====== ====== ====== ================================== ======================================================================= ================== 23 34 98.9 40 CGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCAAAACGCGGATGGTGGGCAAGTTGGCGCTGGGGTCTGAGTCAAG # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 12264-12808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNHZ01000079.1 Mycobacterium tuberculosis strain Bir 272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 12264 36 100.0 38 .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 12338 36 100.0 41 .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 12415 36 100.0 36 .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 12487 36 100.0 34 .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 12557 36 100.0 37 .................................... TCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGGGG 12630 36 100.0 35 .................................... ATGTGCGCCGTCGCCGTAAGTGCCCCACGGCCCGT 12701 36 100.0 36 .................................... ATTTCGACGACAATTCGTTGACCACGAATTTTCAGA 12773 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATTTCGACGACAATTCGTTGACCACGAATTTTCAGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACATCCCACGCGTTACCGCTGGCGCGCATCATTCATCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACAAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACAGCACCACGCGTCGTGCCATCAGTCAGCGTCCTCCTCGTCGTCAGACCCAAAACCCCGAGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 12985-13682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNHZ01000079.1 Mycobacterium tuberculosis strain Bir 272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12985 37 100.0 35 ..................................... TTTCGACGACAATTCGTTGACCACGAATTTTCAGA 13057 37 100.0 38 ..................................... CATCCCACGCGTTACCGCTGGCGCGCATCATTCATCGA 13132 37 100.0 40 ..................................... AGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 13209 37 100.0 36 ..................................... GCACCACGCGTCGTGCCATCAGTCAGCGTCCTCCTC 13282 37 100.0 36 ..................................... GGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 13355 37 100.0 35 ..................................... GCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 13427 37 100.0 39 ..................................... TGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 13503 37 100.0 34 ..................................... CTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 13574 37 100.0 35 ..................................... TCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 13646 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.7 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACA # Left flank : AAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGGGGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATGTGCGCCGTCGCCGTAAGTGCCCCACGGCCCGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATTTCGACGACAATTCGTTGACCACGAATTTTCAGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA # Right flank : TGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //