Array 1 162593-160672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPP01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162592 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162531 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162470 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162409 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162348 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162287 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162226 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162165 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162104 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162043 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 161982 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 161921 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 161860 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 161799 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161738 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161677 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161616 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161555 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161494 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161433 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161372 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161311 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161250 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161189 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161128 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161067 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161006 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160945 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160884 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160823 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160762 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160701 29 93.1 0 A...........T................ | A [160674] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181204-179100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPP01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181203 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 181142 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181081 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181020 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180959 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180898 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180837 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180776 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180715 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180654 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180593 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180532 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180471 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180410 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180349 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180288 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180227 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180166 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180105 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180044 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179983 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179922 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179860 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179799 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179738 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179677 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179616 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179554 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179493 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179432 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179371 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179310 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179249 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179188 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179127 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //