Array 1 28548-24602 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODZ01000008.1 Rothia kristinae strain LCT-H5 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 28547 28 100.0 33 ............................ GACACTGGCCGCGGCCGGGTTGATGGAGGAATC 28486 28 100.0 33 ............................ GGAGTATCCAGATGCACTTTCGACTCGGCGAGC 28425 28 100.0 33 ............................ CACGCCGTCGAAGTTGCCGGCCTTGCTCGCGAT 28364 28 100.0 33 ............................ CTACATCCTCTACGGGCGCGGGGGACGCCCGGC 28303 28 100.0 33 ............................ CCGACCCACGGTCCGCTTCCGCCGCAGCCGCAC 28242 28 100.0 33 ............................ GGTGGGGCGGACCCTGTGGGTGTCCGTTGGCGA 28181 28 100.0 33 ............................ CCGGACACCCCCGAGTGGCTGGCCGAACGCCGA 28120 28 100.0 33 ............................ GCTCACCGCCTGGATCCAGGCCGAGGGCGGCCT 28059 28 100.0 33 ............................ CAAGGAGGACCCCCGAGTCCTGTTCGGGGACAT 27998 28 100.0 33 ............................ CCATGTCGTGTTCGCCGGTCTGGACCGGAGGGA 27937 28 100.0 33 ............................ CAACGGGATCGACAAAAGGTTGACGGAGATCTC 27876 28 100.0 33 ............................ CAACTGGGGACCACGGCCGCAGACCAGATCAAC 27815 28 100.0 33 ............................ CACCACGGCCTGCTCGGTAGCGGACTGGCGGAC 27754 28 100.0 33 ............................ GGACCCGAAGGACTGGAAGTGGTTCGTGCCCGG 27693 28 100.0 33 ............................ GGTCTTCGCACAAGCGATTCAGGCGCACCCAAC 27632 28 100.0 33 ............................ CCCGATTCCACGAGTCCCGGCAGACGGGACGAA 27571 28 100.0 33 ............................ CGCGCACATCATCTGCACATCCTCACGCCCTCC 27510 28 100.0 33 ............................ GTTCGTCCTCGTGTCCCTGGCGGATTACGCGGA 27449 28 100.0 33 ............................ GAAGCGGCTGGAGACGGTCGCGTTCGAGGTCCC 27388 28 100.0 33 ............................ CGCCTTCGGGCGGCCCCCACCCCCCAGGGCCTT 27327 28 100.0 33 ............................ CCCCTACACCGCACTCACCAGGTGGGAGTGCTC 27266 28 100.0 33 ............................ GCATCCTGGCCGTCGGCAGCCGCCGCCCGCACC 27205 28 100.0 33 ............................ CTCTGCGCGGGCGTTGCCGCTGTTCCAGCGGAT 27144 28 100.0 33 ............................ GGCTTATGAGGTGCTGACCGAGGCGGGCTTTGA 27083 28 100.0 33 ............................ CTCTACATGTCCGAGCTGAACCGCATCATCGGA 27022 28 100.0 33 ............................ GAAGCCGGGAGGCTTCGGGTTCTTCGGTCGATC 26961 28 100.0 33 ............................ CCCGATCATCACCGCTTCGGCGGCGGGTGAACC 26900 28 100.0 33 ............................ GTCCGCGCCGGGGATCGCCCCATACTGATCCGG 26839 28 100.0 33 ............................ TAAACGAGAGTGCCATTCAAGTAGAACTTATAA 26778 28 100.0 33 ............................ GCGCATCGGGTGGTTCCGTGATGGCGTTGACAA 26717 28 100.0 33 ............................ GGAGCTCTCGGCGGTGAACCGCAGGGCGTCGGC 26656 28 100.0 33 ............................ GGCGGGTATCGGATCAAGGCCGGGGATGAGTGC 26595 28 100.0 33 ............................ CGACGTGTGGACGTATGACTACGACCTGGACGG 26534 28 100.0 33 ............................ CTATAGGCATGTCTCCAGACGCCACGCAACCCG 26473 28 100.0 33 ............................ GCGGGCCTTCTCGATCTTCTCCAGGTCGATGCC 26412 28 100.0 34 ............................ CCAGTAGCCATTGGTTCCTCCTTAGATGTAGGTA 26350 28 100.0 33 ............................ GGTGAGGAAGTCGGACCTGGCCCGGTGGGGTGC 26289 28 100.0 45 ............................ GCCTGCCNAGCCGGTGAGGAAGTCGGACCTGGCCCGGTGGGGTGC 26216 28 100.0 33 ............................ GCCTGCCAGACCTCCCCGATCCAGGACCGGCGA 26155 28 100.0 33 ............................ CGGACCGTGGACCAGGCGCAGACCGCGAAGGGC 26094 28 100.0 33 ............................ GTACTCGGAGAGCACGGCTGCGTCCTCCTCAGT 26033 28 100.0 33 ............................ GATCTCCCCGAAGCTCAACGCCTCCGGGGGCCT 25972 28 100.0 33 ............................ CTGCCGATCCTGGCCCGCGTGATCGGGGTCCCG 25911 28 100.0 33 ............................ GATCGGCGGCTCACTCAAGCAGGCGGGTTATAG 25850 28 100.0 33 ............................ GCGCGTGAAGGCCGCCTACCTGGCGCTGCGCGG 25789 28 100.0 61 ............................ CAGCACGAACGGCAAGACCTGGGNAGCCGCGCGTGAAGGCCGCCTACCTGGCGCTGCGCGG 25700 28 100.0 33 ............................ CAGCACGAACGGCAAGACCTGGGACGACTACCA 25639 28 100.0 33 ............................ GTAGACCCAGTCATCCCATCGCATCCTGCATAG 25578 28 100.0 33 ............................ GTGCACGAACGAGCAGAACAAGACGGGCCTGGA 25517 28 100.0 33 ............................ GTTGTACATCCCCACCTTGGGGGTCTTGTCCCA 25456 28 100.0 33 ............................ CTGGATCGCCGCGACAATCCAGTCCCAGACCGG 25395 28 100.0 33 ............................ CGACGGTGCGATGCCGGACCGCTTCGCGTACCG 25334 28 100.0 6 ............................ CACGAC Deletion [25301] 25300 28 89.3 33 ..CA..N..................... CGACGGTGCGATGCCGGACCGCTTCGCGTACCG 25239 28 100.0 33 ............................ CACGACGTCATCGATGGGGATCACCTCCGGGGC 25178 28 100.0 33 ............................ GGACCTCAAAGGCTGGTTCGGTGGGGTGGGCGT 25117 28 100.0 33 ............................ GTGCCTTCCGGGTCCTCACACAGCACCCCGTTC 25056 28 100.0 33 ............................ TCGGGTCTACACTCGGCCGGTCGGTGGCCAGTA 24995 28 100.0 33 ............................ GATCGAGCGTGTGATACGGCGGCTAGTAGACGG 24934 28 100.0 33 ............................ CCGCCGCCGGGAAGAAGGTCAACGAGGACTACC 24873 28 100.0 33 ............................ CCAGCCGGACACCAGCACCATCACCCGCACCAA 24812 28 100.0 33 ............................ GCTGTTCGATCCGGTCGTTGGCGGCGGCCAGCT 24751 28 100.0 33 ............................ GGAGTGGCGGTCCCACTCCTCGTCCGGGGCCTC 24690 28 92.9 34 C..............A............ CCCTGCGGAGGGTGGCCAGGGCGCTCTTGCGGGT 24628 27 89.3 0 ...................A...-.C.. | ========== ====== ====== ====== ============================ ============================================================= ================== 65 28 99.6 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGGGAAGACGGCGTCGAACCGGGGAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTACTCACTGCCTGCCCGGCAGGTCTTCGAGGCGACCTGACCAAGTGGCTCTTGGAGGTCAGCCCGGGGACGTTCGTCGGCAACGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAGGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCGGTGGACATGGAGGGCCTGACACTGGTCAGACGGCCCTTGCCGAGCAGTCGGCCCGCCGAGAAGAATCCCCGGCGTACCGGCTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGAGGATCGCGCTGATGATGCTCTCCGATAAACTGAATCTGAACCGGCTGACTTCCTGACGTTTCCCCAGGTCAGGAAGC # Right flank : CCGCCGAACGGACCTGGATCAGGCCAGGGATGTGCCCAATGCCCTCCGGGATCTGTCTTACCCGGCCTCCAAACGGCAACCGTCGCAGACCCCGTCACAACGACATGTAAAAAATTCTCCAGATTTTTTACACGTTCAGCGGACCTGCAAACCTCTTTGACATGTCGTGAGCGCCGCCCCGGGACGCTCCCCCGCGCCCCGACCCCCGAAACACCAGCCCGCTACCATCACCCCCATGTCGCACATCACCCTCGCCAACGACGCCACCCCCACCACCGACACCTCCCGCCCCTCCCCCGCCTTCCTGCCCGCCGCCGAGGCCATCGGCCCCGAGCTGCGGGCCTTCCGCCGGGAGCTGCACCGCAACCCGGAGCTGGGCACCCACCTGCCGTGGACGCAGGCGCGGGTGCTGGAGCAGCTGGAGGGCCTGCCCCTGAAGATCACCACGGGCCGATCCCTCACCTCCGTCACCGCGGTGCTGCGCGGGCAGGGTCGGCCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //