Array 1 25394-33828 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHGT01000014.1 Streptococcus parasuis strain 4253 contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25394 32 100.0 34 ................................ ATGCTTACCAATAACACGGTTACGATCATGATTA 25460 32 100.0 36 ................................ CCAAATCCTCTTATGAATATTGGGAAAGCAAGAACA 25528 32 100.0 34 ................................ TATCTTCGCTGGTCAAGAGGTTCGGTACATACTT 25594 32 100.0 34 ................................ GTCTAATTCAAGCATTTTTTCTCCATAACAAAAA 25660 32 100.0 35 ................................ GTAGTAGATGACGCCATCCGTAGCCAAGGATTCCA 25727 32 100.0 35 ................................ TCTGTGTAAGTTGCATAACCACCCGTCGTCGATGC 25794 32 100.0 34 ................................ CAAGTTATCCACGTTAGTTCTTGCTCCGATGGTT 25860 32 100.0 35 ................................ TGCGAGAAATTAGGCGTTGTAAAAATCGAAGATAT 25927 32 100.0 33 ................................ TCCATAACAAAAAGACCACATCTCTGCGTTCCG 25992 32 100.0 34 ................................ GAATAATTGGCGACACGGTCGAATTGAGACACGG 26058 32 100.0 34 ................................ ATGAAACTCAGCATTAACTTTGATACTGTCGTCA 26124 32 100.0 36 ................................ ATACGATGATTTGGGAACATTTAATTCATCTGCCAT 26192 32 100.0 34 ................................ TTCTCAGAGCTGTTTTATGAGTTCAACAGAAGTA 26258 32 100.0 34 ................................ TTTATGGCGTGCATGCCAGTTTTACGGCTCTAAC 26324 32 100.0 33 ................................ AATGGCTTCTTTGTATTTCTCTGCTTTAGCCTT 26389 32 100.0 34 ................................ TGGTTACCAGGAATACGGGACCCGTTTTCAGTCT 26455 32 100.0 35 ................................ TGTTGGTATCAGCGCTTTTGTCTCACTTATAGCCC 26522 32 100.0 33 ................................ AATCATTAAAATTTGAAACAGTTTGGGGGTGGG 26587 32 100.0 34 ................................ TACCCTATATTTAACTAAACCTCAACTGGAAGAA 26653 32 100.0 34 ................................ TGGAAACCTTCGAAGAAAACACAATAATTATGTT 26719 32 100.0 33 ................................ TGCTCGTTCCATGTCTGTCTAACGCCTAAAATT 26784 32 100.0 34 ................................ ATCCAGCGGAGCGAAAAAGCGCATGAAGGCGATT 26850 32 100.0 34 ................................ ATATAGCCACTTTTTTATTTCTTCATTTGTCATT 26916 32 100.0 34 ................................ GTGGCTTGGATGATGAATTAAAAATCACGTCCAT 26982 32 100.0 35 ................................ AATAGCAAGTTTAAGGAAGAAATGGGGTTCGGCCA 27049 32 100.0 34 ................................ CTGAACCCATTAGAAATGGATTTAGCAAGCTGTC 27115 32 100.0 33 ................................ GGTACTGATGCTGTTCGTGCAGCAACCATTGCG 27180 32 100.0 35 ................................ GTCTTTACCGACACTGTTAATTTTAAAACTTACTA 27247 32 100.0 34 ................................ TGGCCATGATGACACAAGGTATATCTAGTGTCGT 27313 32 100.0 35 ................................ CGAATTGATTGCAAAACTTGCTCAGTCTTTTGCAG 27380 32 100.0 35 ................................ TGTTGGTATCAGCGCTTTTGTCTCACTTATAGCCC 27447 32 100.0 33 ................................ AATGGCTTGGATAGCCTGTACATCATCTACAGC 27512 32 100.0 33 ................................ CTCGAATCGTGTGTATTGTTCGTTGGATCTCTC 27577 32 100.0 35 ................................ AACCTGCGTACTAGTCAATCGCTTGCTAATCTCTT 27644 32 100.0 34 ................................ ACTGCCCATCCGGCTGAAATAGCTCCAGCGGACA 27710 32 100.0 34 ................................ ACAAACGGAATCTATACCATTACCACATCTACTA 27776 32 100.0 33 ................................ CTCCAATCATAAATGGAGTTACAACTACTAAAG 27841 32 100.0 35 ................................ AAAAAGTTCACTTCCATTGTATAAACTAAATCCAT 27908 32 100.0 34 ................................ CTTACGGTACGTTTAAATAGCATTTTCAACCCAG 27974 32 100.0 34 ................................ TTATCCGGCACGTTCGCCGCTATTATTAACCCAA 28040 32 100.0 35 ................................ AATGATATAAGGGTTTGTATCGCTAAAAATAGCAC 28107 32 100.0 34 ................................ TTGTTCAACTGCTTGAACTTTATAATCTAATTAT 28173 32 100.0 33 ................................ TGTTCGTTCCATGTCTGTCTACCGCCTAAAATT 28238 32 100.0 34 ................................ ATTGCCCTATTTATAACGGGAAAATGTTTGTCAC 28304 32 100.0 35 ................................ TCTTCATGATTGATGCTCATTTGGTGAAGTGTCCC 28371 32 100.0 36 ................................ TATCGGTATCTGAGGAATCACCTTGCGAATACTCCC 28439 32 100.0 35 ................................ AAGTCTTACTGTGTCATTCATCTCACAACCCTGCC 28506 32 100.0 34 ................................ TTTATTGTTTGTTATTTAAAGTAAACGTCGCCGT 28572 32 100.0 36 ................................ AAAAGAACTCGGTCATAAGAGATAGGGCCTTTGTTT 28640 32 100.0 33 ................................ CTCCTAATGCGACCTCTATTATCTTCTGGTTGA 28705 32 100.0 35 ................................ AAGAATTTTGAAATCTCAGCGCCATCTGACGACAA 28772 32 100.0 34 ................................ AACCATTCTACCGTCAAGTGCTGTTTCAGCTAAA 28838 32 100.0 34 ................................ AGTTTCGCGATTTAAAGTCCGTGTATAGAAAGCG 28904 32 100.0 33 ................................ TCTTCAAAGTTTCCAGTACATTTTGCAAAGTCC 28969 32 100.0 33 ................................ CAAAATCCTTTCTACGTCTTTCAAATGCTCAAT 29034 32 100.0 34 ................................ AGTGGAAGGAAGCTAAAGTTGAAGTCGGTGATTT 29100 32 100.0 33 ................................ AACTAACCAAGTTACGAATATTTTCAAACTAAT 29165 32 100.0 35 ................................ AAACTATGCGGTTCATTTTCGTTTAGCAACATTGC 29232 32 100.0 34 ................................ GGTAATATCATCCACCTTGGCAAGCCGTTTGCCA 29298 32 100.0 34 ................................ TCTGGGTCAGCTAACACTTGTCCTCAACTATATA 29364 32 100.0 34 ................................ AAAAGTCAGATATTGCGAAATTGCGCAAGAAATT 29430 32 100.0 34 ................................ AACCATCAAGGATGATAAGCAAGTTTTAGCTGAT 29496 32 100.0 34 ................................ AAAGTCCTTCTGACGTGCAGCAATTTCAGTCTGT 29562 32 100.0 34 ................................ ATACAAGATACCTTGCTTTGTTGACCGTAGGATG 29628 32 100.0 34 ................................ AAAGAAATCAAGAAACAGCTGTCTCTGGATGATG 29694 32 100.0 34 ................................ TGTGCGGTACGTAGTTTTAAATGACAGAGGCAGT 29760 32 100.0 34 ................................ CACAAAGAAATAAGATTATTAAAATTGGGGTTAT 29826 32 100.0 36 ................................ GGTCGATACACACGCATACCAGCAAATTTACCTCTA 29894 32 100.0 33 ................................ TGGAAAACATAAACACCATAAGCGATAGTGATT 29959 32 100.0 35 ................................ CCATTGATACCAGATGCAAGAGCAAGCTGTGTATA 30026 32 100.0 32 ................................ AAAAATGGAGGTTACAAGGCACATGAATAAAC 30090 32 100.0 34 ................................ TGCTTTGCTGATGCTGTCATAAACAGCCTTCTCC 30156 32 100.0 34 ................................ TTGGATGCGTTGGAACATTTTAGGCACTGATATA 30222 32 100.0 33 ................................ CAAATAGTTTTTTGCATCGTTTTGTGCTATAAT 30287 32 100.0 34 ................................ AAATAAACCTAGTTCCATAGACTTCTGCGTCGGC 30353 32 100.0 34 ................................ TGGAGGAGTATATGCTGGTTTCGGCGTGACCTCT 30419 32 100.0 35 ................................ CAAAACGTTATCGTGACAAGGTAAAAGAATTGGTT 30486 32 100.0 34 ................................ TGGGTCGCTAGTGGTATGCCATTGTTCCAACCAC 30552 32 100.0 34 ................................ ACAAGCTAAAGAATTTAAACGTTGGGTAACAACA 30618 32 100.0 35 ................................ CGAAGTCGTCTTATGAATACTGGGAAAGCAAGAAC 30685 32 100.0 34 ................................ TAGTGAGATATATAGCCGTCTCCACGGGAAAAAT 30751 32 100.0 35 ................................ AAAAAAACGCATTAAATACTTGACGTATTAAAAAT 30818 32 100.0 33 ................................ CACACGTTGCGCATATTTTTTTCATTGTTTCTC 30883 32 100.0 35 ................................ CAGAAGTAGAGCGAGCATAGGTTATAGATGTAGAT 30950 32 100.0 34 ................................ TGTATAGCAACATCTTGATGAAACTATACCTGCG 31016 32 100.0 33 ................................ CAGCTTGAGGTCAACGAGCGGTACAAGGTCCCG 31081 32 100.0 35 ................................ GCGGTCATGATACGTTCGCGGGCGTCTACCCGCTT 31148 32 100.0 34 ................................ GTCGACGACGATTGGCACCTTAAAGCCAAAAGCC 31214 32 100.0 33 ................................ CAGCTTGAGGTCAACGAGCGGTACAAGGTCCCG 31279 32 100.0 33 ................................ AAAGACGTTAGCTAGGGCGTTGAGTACGGACGT 31344 32 100.0 34 ................................ CTCGTTATATCACTTGTTGTCCAGAATGCACTAG 31410 32 100.0 34 ................................ ATCGGCGTTAACACAGCCCGCACGATTGAGAGTA 31476 32 100.0 35 ................................ AATTGTCAGCAAGAAACGCAAAGCGAAAGCAGGAA 31543 32 100.0 36 ................................ CAAAGAGTTATCAGTCAAGATAGGGAGTGGATTAAG 31611 32 100.0 34 ................................ AAGATAACGTGTCCAAACATCATCGAAATAATTT 31677 32 100.0 36 ................................ AAATTTGTACCCGCCATTTCCATCTGACGACATAAA 31745 32 100.0 35 ................................ TTGAGCGGTTTTATTGACACCTAAAATCACATCAG 31812 32 100.0 35 ................................ AAACATTAAAGAAGCGGTTGAGGCTATCAAGGAAC 31879 32 100.0 36 ................................ AACTCTGCCTTGGTCACTCTCTGCAAAATTTGCCGA 31947 32 100.0 34 ................................ ACCATATCCCCTTGATTGAAACGTTGAATGCTTC 32013 32 100.0 36 ................................ CGAAACGCCATAACCAACACTATCACCCAAATTAAG 32081 32 100.0 34 ................................ AGGAGTATCAGGAAAAGGAAGAATCCGCTATCTA 32147 32 100.0 33 ................................ AAGAGCTTATCAAGAATGCTAAAGGATTGGACA 32212 32 100.0 34 ................................ AATTACTCAAGGATATGCCTTTCCGAACTATCGT 32278 32 100.0 33 ................................ TACAATAGACGGGTCACATTTCATAGGCAACTT 32343 32 100.0 35 ................................ ATTATTTAAGGGAATCCCTTTCGGCTTGATTCCTC 32410 32 100.0 32 ................................ TTCTCTTGCTCTATCCTTAATAGCTTGCTTTT 32474 32 100.0 35 ................................ ACCTTGGTTTCAAGGGCTTTAACACCCAAAATATC 32541 32 100.0 34 ................................ TTTTACAACAAGATAAAAGGTTTGAGATGAATTT 32607 32 100.0 35 ................................ ATTTATTCCCCTTTCTTTACCATACTTGTAGAAAC 32674 32 100.0 33 ................................ TTTAAACGTTAGTTGGGTTGCTTCCATCTGATT 32739 32 100.0 35 ................................ ACCATATCCCCTTGATTGAAACGTTGAATGCTTCT 32806 32 100.0 34 ................................ TAGGCGGTCTTGTGGTGTTGTATTGGCAATACCT 32872 32 100.0 34 ................................ TTAGCAAACAATTGTTTAAACAAAGCCTCATTGG 32938 32 100.0 33 ................................ CATATTTTCCAGCAAGAGTTTCCTGAACCAACT 33003 32 100.0 33 ................................ GATAAACGTTTCAAGCTGTGTCTCAGTCATATA 33068 32 100.0 36 ................................ CGTCAAAGCGTTGTATTCGTAAGCAATAGCTTTCGT 33136 32 100.0 35 ................................ CAAAAGGGAGTGACACCTCTCGTGTACCGTCCATG 33203 32 100.0 33 ................................ TAGTTGTATGTTCCGAGATTTCTGGATAACCAC 33268 32 100.0 35 ................................ CCAATCATCCACGATGATTTCAAGTTTGTAATATC 33335 32 100.0 34 ................................ TACGAACCCTATTTACAATATATCCACCTATTTT 33401 32 100.0 34 ................................ CGGACGGTCTACCCTGGCAACACAGGTCAAGACC 33467 32 100.0 33 ................................ CAAATTTTCCGGATAGCTTTTATGGCACTGTTG 33532 32 100.0 33 ................................ TCATTATATGTATAGTAAGCGCCTGACCGACTT 33597 32 100.0 35 ................................ AGTGAAAGCTTGAATCTCTCCGAACTTATCCTCAG 33664 32 100.0 34 ................................ AAAATTGAGCAAGTCCATCGCATCACAATACTCT 33730 32 100.0 34 ................................ TAGAAGTGCAAGGTTGGTTAAATATAGCCGAATC 33796 32 93.8 0 ...........................T...G | A [33823] ========== ====== ====== ====== ================================ ==================================== ================== 128 32 100.0 34 GTCGCACCCCACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTGTTCGAGGCGAGTTGGACAGTTACCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAGCAGTAGCTGGACGAAAGCGATTGAGACAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCGCTCCAGCAGAATTTGTTGAGTTAAAGAATAAGTTGCTGGAAATCATTGACAAGGAACAGGATAGTATCCGCTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTCCTGTTATAGATTATCTCTGCGAATCGGGCTTACTCATTAAATGTGGGGAGATTCGCCTGAAAAACTTATGAAAAACAGTGAAAATACAGTGAATTTGTGATATATTCTATATCTATAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : GTGATAATCTAATAATCGTTTCCTCAATAAAATCTTTTATCAGAAAATTCAGAGAAAAATATATGTGATTTCTCTAATATTTTTGGTAATATTTTCTAATTTTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTCCCCACTTCATGCTATAATAGTTATATGAGTTTTTAAAAGGAGAAAAAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGGTCTACAGCCTACTATTTTGTTAAAGAGATTGGCCGTCGGGTTGCAGAGGAGGGGTTACAAATTATTGGTGTAACAACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGACGAGGTTGAGTACGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGTGCAGCCTTATTAATGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //