Array 1 38-985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUN010000024.1 Corynebacterium belfantii strain 10-14 NODE_24_length_34928_cov_34.166662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 38 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 100 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 162 29 100.0 32 ............................. CCATGCCGCAGAGGTCAACGCAAGAAGAATTG 223 29 100.0 32 ............................. TGCAGCTCTTTTCCTCGCCGGGCGCGCTGCAC 284 29 100.0 32 ............................. TCGCGCCGCCTCTGATACCGAACCGCAATGGA 345 29 96.6 32 ............................G TATCACCCTTGGCGAGGAGCTGCCCTGCTGGG 406 29 96.6 32 ............................T ACATCCTCAACCACTACGGCTACACTCTCTAG 467 29 100.0 32 ............................. TTTTGCTTGCTCTTCGAACTGCTTTTCACGTT 528 29 96.6 34 ............................A GGCGACGGCTAAGGCCCAGAAGGAATCTGCTGAG 591 29 100.0 32 ............................. TGAAAGATTTGATCTCGCAGGATGAGGGCTGG 652 29 100.0 33 ............................. CACGGAAGGAAAACAATATGAACAACACCGCAA 714 29 96.6 32 ............................G AGTCTGCTGAGGTGGAGGCCAAGGGTCCGGAG 775 29 96.6 32 ............................T TTTTCCAGAAGCACCGGGGATAGCATCAGTCA 836 29 96.6 32 ............................G TCATCGCCGATGATTTCGCGGGAGATGATTTC 897 29 96.6 32 ............................G AGTTGACGAACGTCACGAAGGCTCAAGCTGCG 958 28 93.1 0 .....-......................G | ========== ====== ====== ====== ============================= ================================== ================== 16 29 97.7 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : GCCAGCCGATCTCCGCGACTGGGCCATGACCGTCAACG # Right flank : GTTTAACAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATTTTTGTTGAAGAACGGGTTTTTGGATCTGTGTTTTTCATTCAGAGGAATCAGTAAATGATGGGTCTACTAAAAGATTTTGAAAAAACTAACTTTTAATATCTAAAGAGTGTATTCTGTGGAGAAAGAGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTGCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCTTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTTAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37-1530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUN010000120.1 Corynebacterium belfantii strain 10-14 NODE_122_length_1530_cov_26.271561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37 29 96.6 32 ............................C CGGTTTAGGGATTTTGGCTGTTAGCGCAGCTT 98 29 96.6 32 ............................C CGGTTTAGGGATTTTGGCTGTTAGCGCAGCTT 159 29 96.6 32 ............................C CCTCTATAACACCCTCATCGCCGACCTTGACG 220 29 100.0 32 ............................. CCCATGGGGCTTGTCCCATGGGCTGTAAAAGA 281 29 100.0 32 ............................. CCCATGCGGGGTAAGGCTTGGAAAGCTAGAAT 342 29 96.6 32 ............................C CAGCCCAGCCAAGAACGAAGTCGACGAAATTG 403 29 96.6 32 ............................C GGTAATGCCGGTCGCGGCAAGAATGATGGTCT 464 29 100.0 32 ............................. CCGAAGTCGCCGTATAAGAAATGCCCCCTGCA 525 29 100.0 32 ............................. CCGACAGCCACAGGTATGACCCTATGGCAAAA 586 29 96.6 32 ............................C AAACCCCCACACCACACAAGGTGATGGGGGTT 647 29 100.0 32 ............................. CCCCACGGTCGGCGACGTTGTTTGGTGTTGAT 708 29 96.6 32 ............................C CTGACATTCCCCCCACTGCTCAATAACTCGAG 769 29 100.0 32 ............................. TCTTGCGTGATGTGGGAATAAAAATAACCCCT 830 29 96.6 32 ............................C ACATCCTACAATTTCACCATCTTTCTTGTATT 891 29 100.0 32 ............................. GAACCATCCATAATGAATACCCAACCTCACGA 952 29 100.0 32 ............................. ACGATGAAAGCCATTCACGGTAGCTGTGAACG 1013 29 100.0 32 ............................. GATAGCTCTATGTACAAGGTAGGATGCAATGC 1074 29 100.0 32 ............................. CCCCGCGGCCACATGTCGAAGCCCATGCGGGG 1135 29 96.6 32 ............................C CTGGAAGACCCTAGTTGCTGAGCATGAGATAG 1196 29 100.0 32 ............................. ACGCCCTCCTCACATGGCACCAATCAACACAA 1257 29 100.0 32 ............................. GGTGGCTTCCCAGTGGGTGAGTTCCTTGGTGA 1318 29 96.6 32 ............................C CCACATGTCCTGAGACTTTCCACGGCACTGCA 1379 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 1441 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 1503 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTTTTCCCCGCACCAGCGGGGATGAGCCG # Left flank : GCCCCGGTTTAGGGATTTTGGCTGTTAGCGCAGCTTG # Right flank : | # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29467-30166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUN010000029.1 Corynebacterium belfantii strain 10-14 NODE_29_length_30511_cov_35.732162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29467 28 100.0 34 ............................ CCGAACCGCTAGGTAACCAAGCATTTCAATATCG 29529 28 100.0 33 ............................ GGGTATTGGTGGCTGGGGGTGACTAGGGCCGCG 29590 28 100.0 33 ............................ CGGAAAAAGATGGCTTCACCGGTGGCCTACCCG 29651 28 100.0 33 ............................ TAAGCGCCTTATCGAGGCGTGGCAGAAAGAACT 29712 28 100.0 33 ............................ CCTTCGGCGAGAGAGCGATTCCACGCACATGCC 29773 28 100.0 33 ............................ AAGCGGTCACTACTGGTGGCGTGGTCTAGTGCG 29834 28 100.0 33 ............................ CAAGTTTGAAACCCGGCCATACACGCCCCTTCG 29895 28 100.0 33 ............................ CGCCTCGAAGCCTCCGACCTGCGGCGTGTATGT 29956 28 100.0 33 ............................ CGTGTTGGTGCCCACGACGGGGAAATCAAACCG 30017 28 100.0 33 ............................ CGAGAGAACGGTTTCGGTACAGCGGGGCGCTGC 30078 28 100.0 33 ............................ CAGATCTTGTTCTTGCTCCGCCTCGTGGCATTA 30139 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 100.0 33 GTCTTCTCCGCACACGCGGAGGTATTTC # Left flank : GTCGGCATCTCCGCCGTGAGATTCATTCAAGAAAAATAACGGCAGGTATGCTCGAAGCACTAATGGAAGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCATATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCCTTTACGTTGGAAATGTTTCCAAAAATGTAGCTTCAAATTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGGTTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTAATAGCACACTACAAGTCCTTGATGCAGATGGGCTGTCCGTTTTGGCCTCACGCCCTGGACGAGCCGCTGTAAAAATACATGGTCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CCGATTGGTGTAGTGGCTGCGGGGGTTTCTCCGTCCATGGTGACCTCCTGGGTCTGTTGTTTTTTGGATATGAGAAAACCCCGCTCCATGAACTGCTCCCCATTAGTTGGACTGAGAAATCAGTTACCTACTAGTGGGGAGCAGTTGTATGCGTGCACGTAGTTCGTTGTCGGCGGGACAGCGGGAAGAATTGGTGGCTCTTTTCGAGCAGGGTTATGGTTATTGGGCTGCAGCTCATCATGTTGGTGTTGGTGTTTACCCAGTCCGTGCTTTGTTTCGTCGGTTCTTGCTCCATGGCAAGCTATGTCTTGTGGAAAAGCCTTCAAAGCAGCAGTACTCTTTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 10828-11283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUN010000075.1 Corynebacterium belfantii strain 10-14 NODE_75_length_11284_cov_30.816617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10828 29 100.0 32 ............................. TCGCGGGCCTTCCTGAACCTATCCGCGGTATT 10889 29 100.0 32 ............................. GTGGTAGTCGCTTGCCGGCGTGGGGATAGGTC 10950 29 96.6 32 ............................G CCCGCGTCGGTCTCCACATCAATCCACATGGG 11011 29 100.0 32 ............................. GCTCCCTCTAAAGGCGTTGATATCCACCTTGT 11072 29 100.0 32 ............................. CACCCAGTCGTAGCATTCACAGTGCGCAGCGG 11133 29 100.0 32 ............................. CGGTTTAGGGATTTTGGCTGTTAGCGCAGCTT 11194 29 100.0 32 ............................. CGGTTTAGGGATTTTGGCTGTTAGCGCAGCTT 11255 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGG # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //