Array 1 76550-76341 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBN01000003.1 Cronobacter malonaticus strain SD11 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76549 28 100.0 32 ............................ AGCGCAAAAACAACAATCAGGCACAGAACGTG 76489 28 100.0 32 ............................ GGAATCACTGGAGCAGAGCAGAAAAACGAGCG 76429 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 76369 27 92.9 0 ........................-..T | G,T [76346,76349] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTGCTGGTTTACAGGAGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAACACGCCTCGCTAACTTGTTGATTTTTATAATAGGTTAGTGAGGCGTTGAAAAAGGGTTTTAAGAGGTAAGCAACGTTTATATTTTTATAAACAATGGGTTAAGCGATTTTGGCTTCT # Right flank : CACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGATGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTCGCCGGCAAAAATGTCACGACCTGGGGGTATAACGGTTCTCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCAAACCGGTCAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCATAAGCTTCACACCCGAGCAGCGCGCCGCGAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80259-79811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBN01000003.1 Cronobacter malonaticus strain SD11 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80258 28 96.4 32 ............G............... GACCGCGCCGAACGGGCAGGGGTAGCCCTCAT 80198 28 96.4 32 ............G............... GGCACACTTCAATCGCGTAACCAACTCAACTT 80138 28 100.0 32 ............................ TGGATCATTATCAGGATATTCAGGTACTGCCG 80078 28 100.0 32 ............................ AAAAAAAGCCCGATCTACGCCGTGGCGTTACA 80018 28 100.0 32 ............................ CGCGCGCAGAACGCGCAACAGGTGGTGACGGA 79958 28 100.0 32 ............................ GACACGTATTGCCCGCGCGGTACGCTGATAAC 79898 28 100.0 32 ............................ TTCGTAGTGCCCGTGTTCAAAGAAGTTTTCAC 79838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACATGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGGAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGTATAGCGCCCGGACGTCCAAACCCTTTTTTATGCTCCGCTTATAAGTTGTTGATTTTTAATATATGTATTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCACTCTT # Right flank : ACTTCCACGGCGGCCCTATTACTCCTGATACCGTTCACTGCCGTAACCTGATTAAAGATGCGCTGGTCATGCCGCAGGCGTTTATCGCGGCGATGGCGGGTGACGACGAGCAGTCGTTTCGTCAGCGCTGCATCACCGGTTTTCAGCAAGCGGATGCGCTGGATCTGATGATCGCGACCTTACAGGAAACCGCCTGTGAACTGGGCGGTAACGCGCCATGAACGTGCTTTTGATTTCACAATGCACGAAACGCGCGCGGGAAGAGAGCTGCCGTATTCTGGATCAGTTTGCCGAACGTAAAGGCGATGGTACGTGGCAAACGGTTATTACGCTTGAAGGGTTAAACACCCTGCGGCGTTTACTGCGTAAAACCGCCAGGCGCAATACTGCGGTTGCTTGTCACTGGCTTAAAAAAGGCGGCGACACTGAACTGCTGTGGGTGGTTGGGAATCTGCGCCGGTTCAGCGTGCAGGGCAGCGTTCCCACTAACCGTACCACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201027-202336 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBN01000001.1 Cronobacter malonaticus strain SD11 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201027 29 100.0 32 ............................. CACCTTTCGTCGCCCGAGTCGGTATCGGTGCC 201088 29 100.0 32 ............................. CGGCGTTGTGTTGACGCCACGGTCGCGCATAA 201149 29 100.0 32 ............................. AACGCTGTAGATTCCGTAGATTCAAGAGCAAT 201210 29 100.0 32 ............................. AAACCCCAACGCAGGGAGATTATCGGGAGTAC 201271 29 100.0 32 ............................. GGTGGTTTAACTCTGTGATAACGCCGGAACCG 201332 29 100.0 32 ............................. GGGGTGACGGTTGGAACTCGTTACTGATGCAG 201393 29 100.0 32 ............................. AGCCAACACAGTATGACGATGAAAAAAAATTG 201454 29 100.0 32 ............................. AGACTTACGTTTCCCGCAACCTGGGGCGTCAG 201515 29 100.0 32 ............................. CCGCGCTGGGCCAGCCGCATAACGCTGGAGAT 201576 29 100.0 32 ............................. CGCGACGAAATCAGCCGGCAGGTTCTGCTTAA 201637 29 100.0 32 ............................. GGACTGGCCCCGCGCTACAGCGATAAGGGCGC 201698 29 100.0 32 ............................. CCGCGGCCGCGTTTCTGGTTTGGGGCGATTTT 201759 29 100.0 32 ............................. TGAGATTACACCTTGCTGCTCGAATTGCTGAA 201820 29 100.0 32 ............................. CTGGCCTTCATTCCTCAACTCTCGCCAACGCA 201881 29 100.0 32 ............................. GTCGTGCGGTTCGAGAACGCTCCGCCAGGTAT 201942 29 100.0 32 ............................. GCAACTATTCAAATGCGAGCATGTTTGCTTCT 202003 29 96.6 32 .............G............... CGTGGCTGTGCGTTTATCCGCGTTCGGCGTCA 202064 29 96.6 32 .............G............... ACGATGAAACGCCGTGGTGCGCTGCGTTTGTC 202125 29 96.6 32 .............G............... GAGGTAGGCTTGAGCGTCGCCGCTCTTGGCTT 202186 29 96.6 32 .............G............... TTGACTGTGATATTTGGCTGGACGGGATTAAT 202247 29 96.6 32 .............G............... ATTAATTTCGCTGGCGTTGTATCCTGAAGGAG 202308 29 93.1 0 .............G...........G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 CTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCATCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGATTAACGTTAGT # Right flank : GCGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229064-229885 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBN01000001.1 Cronobacter malonaticus strain SD11 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229064 29 100.0 32 ............................. CTTGATAATGCTGTTGGGTGTTTTTACTGCAT 229125 29 100.0 32 ............................. CGAGAGATCGTCGCCGTCAGCAAGAGAAACCG 229186 29 100.0 32 ............................. CAGGAATAATCACGCATACGCACCGAAAACTT 229247 29 100.0 32 ............................. TGAATGTTGCTTTCCTCGCCTGAAACATGGAA 229308 29 100.0 32 ............................. TGATAAACCCCTATATAATAAAATAGCTAAAG 229369 29 100.0 32 ............................. CGGGCTTCAATAAGCTGCTGGATATCGAAAAA 229430 29 100.0 32 ............................. GACTACGACATGAATGCCAATTTTGAGGAGCA 229491 29 100.0 32 ............................. CTCATTCTCTTCTCCGTAATGGCTCTGCTACT 229552 29 100.0 32 ............................. CAGGGCTGAACAAACAGCAGGCTCAGGCGCTC 229613 29 100.0 32 ............................. AGGTGGAGCAACTCGCGAACGCCGATCCGCTC 229674 29 100.0 32 ............................. ACCACGCTCCAGGTATCGGAACCGGGCAGACA 229735 29 96.6 32 ............................T CGACGCTGCAAACGCCGATCTATCAGCTATCG 229796 29 100.0 32 ............................. AAAACGATACGAGCCAAAATCCTCGCCAGCAT 229857 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCAAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCAACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //