Array 1 78924-77937 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURE01000074.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002074 CFSAN002074_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 78923 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 78862 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 78801 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 78740 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 78679 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 78618 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 78557 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 78496 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 78393 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 78332 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 78271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 78210 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 78149 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 78088 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 78027 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77966 29 96.6 0 A............................ | A [77939] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.1 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1079-2083 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURE01000067.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002074 CFSAN002074_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1079 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1140 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1201 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1262 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1323 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1384 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1445 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1506 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1567 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1628 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1689 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1750 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1811 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1872 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1933 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1994 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2055 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1133-1777 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURE01000082.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002074 CFSAN002074_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1133 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1194 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1255 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1316 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1383 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1444 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1505 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1566 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1627 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1688 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1749 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CGTCGCGGAAAATTTCGCATTGACGATAAAGAGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //