Array 1 252436-251393 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXQ01000004.1 Parafilimonas terrae strain DSM 28286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 252435 47 100.0 30 ............................................... AAATGCTTTGCGTTTAACCCGACATACGAT 252358 47 100.0 30 ............................................... ATACACAGAAAAAACATTTGCAATAAAGAT 252281 47 100.0 29 ............................................... CAACAGAAAAGACAGTAAGCATACTCACC 252205 47 100.0 30 ............................................... TATGCCGCTTTCAACCAAATCAGCAATTGC 252128 47 100.0 30 ............................................... TTCATCACGTTTGGCCCATTGGTTTTTCCA 252051 47 100.0 29 ............................................... CAAAGAAGCTGCCAACGAAATAGAAAGCC 251975 47 100.0 30 ............................................... ATCTTCCAGGATATAGACGAAAACACCGGC 251898 47 100.0 29 ............................................... CAGGTAATATTTCCCAGCCAGAGCAACCA 251822 47 100.0 29 ............................................... GATTTAGAGGAAAGCAGGCCGAAGCAAGG 251746 47 100.0 29 ............................................... GTTAAAAGAAGTTTTAGCGCCCGTTTTAT 251670 47 100.0 30 ............................................... TAATCGAAGGAACGTCCACATATTTGTCAT 251593 47 100.0 30 ............................................... TGCAGAAGCTGGTTGAGACGTTAGGCGAAA 251516 47 100.0 30 ............................................... ATGTATATAAGCACACCGGCACAAGCCCCT 251439 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 100.0 30 GTTGTGATTTGCTTTCAAACTTTATTCTTGTGATCTTTGAATACAAC # Left flank : CGTGGAAGCGCCCACGCCGGAAACGCTTATGAGCTGTAAAAAAAGCTCTTTTTCTTCCACATCATTAAAGCCATATAATGTGTGCGCATTTTCAGTAATGTGCAGGTAAGTAAACAATTTCCCGCTTTCTTTATTTGCAATAGCCGAATAGGTGTTCAGGCTTATCTGCAAATCGTAGCCAACGCCGTTTACATCAACAATTACCTGCGAGGGCAGTTTGGTTACAAAATTTCCTTTTACAAATGCTATCATACAAAGGCATCAAAAATATGGCTTTCATTTAATCGGCAGATTATTTTATTGAAGGAAATGCCGGGAGATATTATGGTGGTACTGAAGCAGTATGCAAACGGCGCTTATTTATTTTATAAGGCTGTCATTTTCAGCGTTCAATTTTTGGCTGTGTTGCGGATAAATGAATTCCTGCCTGTATCGGGGCCTGATAATTTTTCGCCGGAGGATGTTTTCCTAACCGGAAGAAAAGGAGCCTGTAGGATGGA # Right flank : AGTTTAAGCCGAAAGCCTTACCCATAAAGGGTTTCAAAGAAAAACAGGAATGAAAAAATGAGTTTAAAACCCTGTGGGCAGTTTGAGTTCACAGGGTTTTTACTTTCCTAAGCATCCCGGTTACTCCGTGCCTTGCAATAATTTACTTAAAAATAGCGTGAGCTCGGGATAAGATTAGTCAGTGACCGTCATTTCGAAGGAGCATTGAATACGACCTTGAATATTGTGTGTATTATAAAAACTTTTTCAATAGAAGAAGCAATCCTGAAAGAAAACAAATAAAAAAGTGGACAGGTTAAAGAAAGAAAAATTGATCAATTCAATAAATCTAAATTTGGGTGAATATGTAGAAATTGAAAAATTTTAAGATATTATTCAAACCCTCTAAATCTCAGGAGATTTCTCCTATCGTCGAAATGACGTTCGAAGCGTTTTATATTTGCAGTCATCTTTAATTTGGTAATTCAGGTTTAAATATTTCTTATCCCGAACTCACGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAACTTTATTCTTGTGATCTTTGAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 188639-186630 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXQ01000002.1 Parafilimonas terrae strain DSM 28286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================================== ================== 188638 36 100.0 34 .................................... GTACCTGCGGAGTAGGCGCTCCAGTCACATTTCC 188568 36 100.0 32 .................................... ATTTACTGTTTTGCTCTACTACACCAAAGAAT 188500 36 100.0 32 .................................... AGGTGATAGAGAAATTAAATAATCAATTCTCT 188432 36 100.0 36 .................................... ATTACTACTAATCCGGATAAAAATAGCCCCATTATA 188360 36 100.0 33 .................................... AATTTATTTGGAATTTGGACTCCAAAATTGCCA 188291 36 100.0 32 .................................... TTTTTAAATTTCCCGTTCACGCTGGCACCCTG 188223 36 100.0 33 .................................... ATCCGTTAGCCTTGCTATGCTTGCTCCATAGAT 188154 36 100.0 33 .................................... ATTCCAACCTCTGTTGTTCCAACCGCTATTCCT 188085 36 100.0 32 .................................... TTCATACATAATGCTGCATATGTTCTAGCTAT 188017 36 100.0 33 .................................... TTTTAAAGCGGTAACACTGCCGGCGGCAGCATC 187948 36 100.0 34 .................................... AACCAACGGTCTTCCAATACTTTGATCCAATTCA 187878 36 100.0 33 .................................... CTGCATCATCCGATTCAGGGGTTGCATAAAGTT 187809 36 100.0 32 .................................... AATATTTTGGATTCCAGAATTTCCAGATTAAC 187741 36 100.0 33 .................................... AAAGTCCAACCTGGAACCTGCAGCCAACTCTTT 187672 36 100.0 34 .................................... AAAATCCCCGCATAAGATACCGCAAGTAATACAA 187602 36 100.0 34 .................................... GTTCTGCAACGCGCATAAACATCCAGCTTTGAAA 187532 36 100.0 33 .................................... AAATCCAGAGGCCGGTCAAGGTCCTCTAAACTT 187463 36 100.0 34 .................................... TTTTTAGAGGTTTTTCTATAGAAGAAAACCTCGA 187393 36 100.0 35 .................................... GTAATCAATTCGAAGGTAATGCATGCGGAATCCAG 187322 36 100.0 35 .................................... TTCTTTCTTGTCTTTTGGCTCAATAGGTTTTAAAT 187251 36 100.0 34 .................................... ATATAATAAAGCCAAGTGCGATAAGCAATATAAA 187181 36 100.0 32 .................................... CCAATACTCCATATTCCACCTGCTTTGCAGGA 187113 36 100.0 44 .................................... TTGTTCGTTTGTTACGTCTGCTTTTGGTTCAGCAGCAACCTTGT 187033 36 100.0 35 .................................... AGTGTTGGAAACAGTTGCATTAACCGCAATTTTCT 186962 36 100.0 34 .................................... ATGTTGAAGACAATAGTCAATGGGAACATTATTC 186892 36 100.0 35 .................................... CATTAATCATAATAAGGTTCCCAATACTTCTCCAA 186821 36 75.0 120 ....T.......C.....T.TA..........GTTG AAAGCTGATAGTCCATAGACCATAGTACACAGAAATAAAAGCCATTTTTGAATATGAACTGACAGATAGTTAATGGTTTAACCGTGGACGGTTGACTGTCGGCCATGGACTTGCCACTTA 186665 36 88.9 0 ............C.....T.TA.............. | ========== ====== ====== ====== ==================================== ======================================================================================================================== ================== 28 36 98.7 37 GTGAGAGAGTAATTTCAAATCTTCCTTGACTGAAAC # Left flank : AAAACACTGCTGAACAAGCGGCGCATAGCCCGAAACGACCAGGTTACCGCATTATGCAGCAGCCTGGCACAGGCGGTAAAGAACCATAAAGCTTAAAACCTGTATTATGGACATACTTTTAATTATCAGTTATGATATGAATAACGATAAAGGGCGCACAAAGCTGGCTAAAGAATTGGAACGGTTTGGCTTTACCCGCATACAATACAGCGTATTTGCAGGAACTGCCACCATTGCCCAATGGCGTAACCGGAAAAAGAAAATAGAAGGTATTTTTTTAAAATATGCTGAAGCCGGCGATAAACTGTATGCCATACCGCAGAGCGAAAAAATGTTCAAACAGGCTGAAATGCATGGAACAGGATTTGACATAGACTGGGTAACAGGTAAGGTGCATACTTTGTATTATTAAAACCCCGTATATGGCAAAACAACTTATTGTGCGCACAAATTTTTGTTTAACAAGCGGATGGTTTAAAACTATTTATGCTACATTAGCG # Right flank : AGGCGGTTGGCGGTTTAACTGTAAACGGTTAACCGTTTACTCAAGGTGTTTTTTTAACAATGCAAAAAGCTCGCTTTTTGATTTCACCCCTAATTTTTCAAGGATATGTTTTCTATGCGTTTCAACAGTGCTTTCAGATATCGTTAGCTTTTCACCTGTTTCCCTGTTGGAAAAGCCTTCAGCCAAAAGTTCTGCCACTTCTATCTCCCGGCTGGTTAATTCTTTAAACTTTAAATAATCATCCAGCTTGTTCAGCTTCTCAGATGTATGCACGTTTTTTTTAGCGCTGGTTTTAAAATACTTTTCGCCATTAAGCACTGCCAGCAGTACCGGAACCAGCGAATCTTTCTCCGATTTTATTATATAACCGTCAAAGCCCAGTTTTTCCAGTTCTTTTTCCATTCCTTCATATTGTGTAAAAGCAACAACTTTACACTTCTGAAACTTTTGTTTAAGCAGGCCACACGATTTTGCACCATCAATGCCGGGCAGGTTTAAAT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGAGAGTAATTTCAAATCTTCCTTGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //