Array 1 25606-29290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZC010000004.1 Pseudoflavonifractor phocaeensis strain An569 An569_contig-110_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 25606 33 100.0 36 ................................. CCGGAGGGTGCACAGGAGACCGACGATCTGATTAAC 25675 33 100.0 33 ................................. TCAATGCCATGGGCGGCTGCTGCAATGGCGGCG 25741 33 100.0 34 ................................. CACCCCTGATGGTGGAAAAAAAATCCGCCCTCCT 25808 33 100.0 35 ................................. GTCCCTAATTTTAATCGGCCGGATAAACTTTATCC 25876 33 100.0 33 ................................. TTTTCTCGGGCGTACTTAACAGCGCGTTGAGGG 25942 33 100.0 34 ................................. GCTGGCCGTTGGCTCTTGGCCCGTCCAGTTCCGC 26009 33 100.0 37 ................................. TGCCACTCGACGAACACCTGCCCCTCGAACGTGTCCC 26079 33 100.0 33 ................................. AAATGCGATCAGCTCGACACCATCAACGACGGT 26145 33 100.0 34 ................................. CTGCCACCTACGCTGCTCAGCAGCCTGCTGAGCA 26212 33 100.0 36 ................................. TCCTACTTTTATGGAGGATTTCCAAAAAATTGTTCA 26281 33 100.0 35 ................................. TCCGCCATGGAGACCATGAAGGACCTGTGCCAGAT 26349 33 100.0 35 ................................. CGGTCTTGTTTTTATCTTCCACCGGCGCTATGGCC 26417 33 100.0 33 ................................. TGCTTTGAAAGTTGTGGACTCTGGGATGTACCT 26483 33 100.0 34 ................................. AAACCGTAGAAACCGGAAAATCTGACCCCGGCAA 26550 33 100.0 36 ................................. TGAAATCAATGTCCTTACCCATGTTAGGAGACAACA 26619 33 100.0 35 ................................. TGTAAACAAGGAGGAAGCCAATGGCGACTAGCATC 26687 33 100.0 36 ................................. CTGTCGGATACCAAGGCCAACAGCGCCGACGGCACC 26756 33 100.0 34 ................................. CATATGACAACTATGTGGCCCTCCTCCACCAGGG 26823 33 100.0 33 ................................. ATGTGGGCAACTTCAAGGCCCTGGGCACGCTGT 26889 33 100.0 33 ................................. CGGCTCCACGAATGGCTCCGAAGAGGCAAAGGG 26955 33 100.0 33 ................................. ACTCCCACCTCTGATGATGGACGGTGGGAGACG 27021 33 100.0 33 ................................. TGAGCCTAACCCTGAGCCTGAAAATGGCCCGGA 27087 33 100.0 35 ................................. AGCTGCTGCGGCATCCAGCGCCGCGACTACCCAGG 27155 33 100.0 35 ................................. CTCCGGCGTGGGCGTCTCCTCCACCGCCAGCGCGT 27223 33 100.0 35 ................................. CGAAAGAATCCCAGCTAGCAGCAAGAGGGCAACGA 27291 33 100.0 36 ................................. ATTGCAACGAGTCTTGATCTCCATGAGAACGTACCC 27360 33 100.0 38 ................................. GAGTGCATAAAGAACCTCCTCACGGTCCAAGCTGTCGC 27431 33 100.0 34 ................................. AAGTTGCCAACGGTACCACACATCAAGGGCTAAA 27498 33 100.0 33 ................................. TGGATAAGTCCGCGGCGACGAAAAGCCCCCGCT 27564 33 100.0 34 ................................. ACCAGCAGCCCAACACCAAAGGACCGGAAGAAGC 27631 33 100.0 37 ................................. ATTGCCCACTAGTTGCAACTCAAAGAGCTGGTTAAAG 27701 33 100.0 35 ................................. CCACACAAAAATACATCCTCTTATAGGCCCCGGCC 27769 33 100.0 37 ................................. TGTGCATTGATGTCGATGAATGCAATGCACCCGTCCA 27839 33 100.0 34 ................................. CTATGTGTCCCGCGTCCCAAAGTCCTCCGATTAC 27906 33 100.0 34 ................................. AACTATGACCGTGGCCTGAAATTCCAGGTTGACG 27973 33 100.0 33 ................................. GGTGATTTCATCGGCAAGCTGCTGACCTTTTGC 28039 33 97.0 36 ................................A ACCAGTCCCGCGCCCCATTTGGCCGCCGTGACGATG 28108 33 97.0 35 ................................A AACGGGGACACCATCACGGCCAGCCGCAAGGTCCA 28176 33 97.0 38 ................................A AGCACCGTCCACGAGGCAATCGTGGCGGCGGGCATCGC 28247 33 100.0 36 ................................. CTGCCGCCAATTGCTTATTTATCATGCTCTTTTCTT 28316 33 100.0 35 ................................. CGACGCCGGGCCAGCTGGCGGACTACCTGGACAAC 28384 33 100.0 33 ................................. ATCCCAAAGTATGCGCCGTACTTTGACAGCTTC 28450 33 100.0 34 ................................. GGCATTGACAGCGTGATGAAAAAAGCGGTGGAAG 28517 33 100.0 36 ................................. CGTGCATCTTCCGTTGTGTGAACAAACGGATTTGAA 28586 33 100.0 35 ................................. AACGGCTTGTATTTGAGTAACCGATACGCCGGACA 28654 33 100.0 35 ................................. TGCACAATCTGTTAAGCTCATAAACATTACTTTCG 28722 33 100.0 34 ................................. TGTGCATCCGGTGTATATAAAACTGCACGCCTGA 28789 33 100.0 33 ................................. TGAAAAAGTTAGCTTTATACCCTATCGCCTGCA 28855 33 100.0 33 ................................. CAGTATTTAACGCTCCCGACTCCGACGCCCACC 28921 33 100.0 34 ................................. AGTGCCAGGGCCTTAGCGTGTGCGACTTCTGGGT 28988 33 100.0 34 ................................. GGGAAAATGGAGGACGTGGGGAAACGTGAATACC 29055 33 100.0 34 ................................. GGACCGTCTCATGCCCATCCAAACGGCCATAAGG 29122 33 100.0 34 ................................. CCATACCTCCAAAAAGGCGCGGGGAAATGAGGAG 29189 33 100.0 36 ................................. ATATCGTGAAACGATGCTCCATATAGTAGTACGCTA 29258 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 55 33 99.8 35 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : AAAGACTATCCGCCCTTTTTATGGAAGTGAGCATGTATGCTGGTACTGATTACATACGATGTCAATACGGAGGACGCGGCAGGCCGCAGGCGGCTGCGCCAGATTGCCAGGCAGTGTGTCAACTATGGACAGAGGGTTCAGTGCTCTGTGTTTGAATGTTTGCTGGACACGGCCCAATGTAAACTGCTTCAGGCAAAGCTGCTGTCCATTATGGATCCGGAAAAGGACAGCCTGCGCTTTTATTATCTCGGAAAACGATATGAAAACAAGGTGGAACACTTTGGCTGTAAATCGTCCTATCTGCCGGAGGCACCGTTGGTTCTCTAGAGGTGCGATGTGGCAGCGGCCATAGATGGTGTGGGCGGTTCGCACCGAAATAAAGCTGTTTTTCGCAACTTAAATGAACTGATATTATCCATAGCATTGAAAAAGCGCTGCAAATATGCTAAAGTTTATCTAAACAATACAAATTTGCAGGTATAGTTTTGTATATATCTGCT # Right flank : TCGGCCTGGGCGGAGGATAACATCAGCGGTATAGGCAGATACAGGAACTTCGTTGATGTGATAATTGCTCCTGTCATTGTCTTCCAGGCCGTTCATGCCCTTAACCGGAGTGCGCACATAGGAGGAACCGTCTCCGACCGTGTAAAAATCCCACAAAATAGGGTTAACGGAAAGGCCGGCCTCCTCCAGCGCCTCTTTGAGAGAGGGGGCTTTGCTGGTGTCGATATTGGCCGATCCGGTGCCGCAGGTGGCGATGTCAGCACTGGAGCGGCTGAACAGGCTGACAGCGGCGCCGTTTTTGAGCGGCAGGGCGTTGTTGTCGTTTCTCAGCAGCACGGCGCCTTCGCCGGTGAGCTGTTCGGCCACCTCTTTATCATGGGCCTCCAACGCTTCAACGGAAGCAAAGTCACATTCAAAGTAGACTGCGTCCTCGTTTTTGTTTTCGACTTTATATGTATCGATGTGAAGGGCGATGTTGATCGCCTGAGCAGCGCCAAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13137-11376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZC010000051.1 Pseudoflavonifractor phocaeensis strain An569 An569_contig-110_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 13136 32 100.0 37 ................................ TATCATATCCACCTCCGTAACGGTACGTCACCGCCGT 13067 32 100.0 33 ................................ CGGTAGCCACGCCCAGCAGGCTATTTGCCCACC 13002 32 100.0 35 ................................ ACAGGGCCAGTATATCATGGATTGCATACTTATGC 12935 32 100.0 37 ................................ TTGTTGATGTGGCGCGCTTGCGGTGCGCGAGCACCAG 12866 32 100.0 36 ................................ CGGTAGCCACGCCCAGCAGCCTTATTTGCTCATCTG 12798 32 100.0 34 ................................ ACAAACGTATGTACTACTCTGCGCGCTTGTTCTG 12732 32 100.0 35 ................................ GAGATTGGCGATAAGGGCCTCCCGCAGAGCGGGAC 12665 32 100.0 38 ................................ AAGCCGCGCCCCGTGGGCCGTAGGTCGGCACGCCCCAC 12595 32 100.0 34 ................................ CCATTATGCGGGACAGGCAATGTATTGCGGCTAA 12529 32 100.0 33 ................................ ATATACCTCGCCAAATCCTCATAAGTATAATTT 12464 32 100.0 34 ................................ ATGGCAGCGCTTGCACAGGGATTGCAGGTTGCCC 12398 32 100.0 34 ................................ TCTCGGCTGGCTGCTTTGAGAACTTACAGTCAAA 12332 32 100.0 34 ................................ AATGTGGGCGGGCGGGTAGGCGTAGGCAAGCCAG 12266 32 100.0 33 ................................ AAGCTCCTTTCTTGCCCACGCCATGGAGTCCGG 12201 32 100.0 32 ................................ CAGAAGGCGCTATATCAGACGAATCCGTTTCC 12137 32 100.0 33 ................................ ACCTTTCTTGTTCGCCCACAGTTCATCAAAGAT 12072 32 100.0 34 ................................ TTTACCGGCGAGACCGAGAGCCTCAAAGAGCTTG 12006 32 100.0 38 ................................ ACCGATCAGCTGGCCCTGGCCTCCGGCGACTTCGTCCG 11936 32 100.0 35 ................................ GTTTTTGGTGTCCAGCCTGGACACTTATTCGGTTT 11869 32 100.0 34 ................................ TTGTCCTCTTCTCCGTCCCCGTTCCCTGCAACTC 11803 32 100.0 35 ................................ TTGCGGCAGTTGGTGACCTTAATCTCCAGTCTCTC 11736 32 100.0 34 ................................ ATTGAAGATGGAGACGGGAAGCAGTCTGGCGAGC 11670 32 100.0 34 ................................ ACGTACGGATGTACTACTCTGTGCGCTTGTCCTG 11604 32 100.0 33 ................................ CGCCAGCGTCCCCGCATGCTCCCGGTCGATGGG 11539 32 100.0 32 ................................ TTGTGCGCGGCGAGGACGGACGCTATGCTCTG 11475 32 100.0 36 ................................ AGACTGGGCTTGGTGTCCTCGGTGCGGGTGCAGATC 11407 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ====================================== ================== 27 32 99.9 35 GTCGCCCCTCTCGCAGGGGCGTGAATTGAAAT # Left flank : TGGATCGATATCCGCCCTTTGCCTGGAGGTAGCATATGCTGCTGGTGATTACTTATGATGTGGATACCACCGATGCGCAGGGGGCAAAACGTTTACGCAAAGTGGCCAAGCTATGTGAGCGAAGTGGGGTTCGGGTGCAAAATTCCGTATTCGAGGTGCTGGTGGATGCCGCACAGCTGGTAGTACTGAAAGCGGAGCTTTCCAAAATCATTGACCATGAGCGAGACTCTGTTCGATTTTATCGCCTGGGAAATTCCTATCAGCATAAGATTGAAACCATGGGGCGTACCCCTTTAGTACAAGCGGGGGAAGCTTTGCTGCTGTAATTGTGCGCCTACTTCGCCCATACAGGAAATCCCGGGAGGTAGGCGCAGAAAAACGAGAGAATCTAACGGAAGAATCCGGAGACTCGCGATCTGCTGTTACGATTTTTCCCTCAAAACAGTTTATTTTTGTTATAAATGCGGCAAAATACTAGACATATTTTGTCTAATTTTGCT # Right flank : AGAACATTGAAATACAATTTGAGCCGACAAAAGCAGCGCCGATCTTTCCTTGACCGGCGCTGCTCCTTTTAGTGGATACTCCATATTAACCGTTCTATTTGATCACTTCTGTATGTACCGTAGATTTAGAGACACCGAATACCTTGGCGGCGGCGCGCACGGTGGTGCGATTCTCAATGATGTAACAGGCCAGAGCACAGGCCCGCTCCTCGATATTCCCCTTCAAAGACATGCACTCCCTATCCCTCTGAGCTGTTGCCCTATCCTATGAAGGGGGAATGAAAAACATGATGGAAAAAGATAGCCGGGGAGGCATTCCGCAAGGACAGGAGTTCTCCTCCCAACACGCTCCGGGGAAAGATCAAGCCTTTGTTTGAAAAATAAAACCGCACATTTTCTGACAAAATTTTATGCTCCCCTTATGCCGGACCATGCCCGGTCCGACATAAAGGGAGCAGTTTCATTTTTTGCCTATGATCTGAGGCCCCGGCGAAACCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCGCAGGGGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //