Array 1 1018-2146 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000755.1 Streptomyces albidoflavus strain 143 NODE_645_length_2671_cov_23.3023_ID_1289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1018 28 100.0 33 ............................ GAGGCGGCCGTCGCGCTGTACCGCGAGGTGAAG 1079 28 100.0 33 ............................ GTCGCGGTGCTTCTCCCCGCCGGCCTTGTGCGG 1140 28 100.0 33 ............................ TCTCGCGCCGGTAGCACGGCGAGATGGAGACGT 1201 28 100.0 33 ............................ GTGCCTGTGATGGTTCGCCCCGCCCGGCCCGAG 1262 28 100.0 33 ............................ CAGCAAACGCCCCGCCCAGGGACACCCGGGCGG 1323 28 100.0 33 ............................ CACCGCCTTGTGCGTGCCGAAGTAGCGGCCCTG 1384 28 100.0 33 ............................ CCACGGGGGCAGGAACTGAACCCCAACGGGGTG 1445 28 100.0 33 ............................ CTTCGTGCTGTCGTGGATCACGCCGAGGTTGAC 1506 28 100.0 33 ............................ CGCGCCGCAGCGTGGGGCTACGACAGAGAGCGA 1567 28 100.0 33 ............................ GTCCTCGTCCAGCTCGTGGTCGGGCCGCAGACC 1628 28 100.0 33 ............................ TCCGGTGAGGGTCGCCCTCCAGCGGTGGACCCG 1689 28 100.0 33 ............................ CTGAGCAGGAACTCAGGTTGCCGCCGCTGCCTC 1750 28 100.0 33 ............................ CGCTCTGACCTGCGTGACAGAGCGCGTCACACC 1811 28 100.0 33 ............................ TACGTACTCGACCCGCGCACGTTGTGACTCCAT 1872 28 100.0 33 ............................ GGGCACCCTCGCCCTGGTCGCCGCGTCCGCCCT 1933 28 100.0 33 ............................ CTCCGTGCGGGTCCCGTTCTCGGCGACGTCGCA 1994 28 100.0 35 ............................ TTTCGTGCCCGGGGGGGGTAGCGCCCGGTGGTGAT 2057 28 100.0 33 ............................ GGGTCTGTGGTCCCTCACTCCCGCCCAGTACGC 2118 28 96.4 0 .............G.............. | G [2135] ========== ====== ====== ====== ============================ =================================== ================== 19 28 99.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AATGCAGGCGTTGCCTTACCAAGATCGTGGACAGCGCATAGCCACGCAAACAACCTGCGGCCCTGACCCGGACCACCGGACACCTCGTCCAGCAGGCCCCGTGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGACCTTCCACTGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTTATGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGTGCGCGCTGGCGACCCCCCGCCCGCCGGGACGTAGGCCGCCGATCAAGAGCCCGGAGACCGGATTCGCCCAAGGTCCGTGGTGTCGGACGGCGTCCGGGGGCGGTCTCAGGGGAGCATGGGGACGTGCTGAAACCTCCGATCGCGCCGATGCGCGCCGAGGCACGGGCCTCGCTTCCTGCGGCGGGCGCGCCGGCTGGCATGTTCTGGCAGCAGAAGCTCGACGGATACCGGGTCATCGCCTTCCTCCGCGGCGGCCGTCTGCACTTTCAGTCCCGCTCGGGGGCTGACCTCACCGAGCACTTTCCCGAGCTCCAGGCTGCCGCTGGCATCGGCATGGACCTGGTCCTCGACGGCGAACTGGTCGTGCTCCAAGGGGGGAGGCTGGACTTCGCGGCGTTGCAGCAGCGGGCCCGGCTGGAGGGCTTTCGCGCCCGCTCGGCCAGCCGGTCGATGCCGGCGCATGTCGTCGCCTTCGACCTGCTGGAGGCCGACGGAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4457-2971 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000314.1 Streptomyces albidoflavus strain 143 NODE_112_length_15871_cov_40.1968_ID_223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 4456 29 96.6 32 ............................T CCGTTCGAGTCCGTGCTGCGGGACGGGGTGCG 4395 29 100.0 32 ............................. CCTTCGGTGTCGAACGGGTCGTCAGAGGTCGA 4334 29 100.0 32 ............................. CGGCTGATCAGCTCCAGCTCAACACCGGGCTT 4273 29 96.6 32 ...A......................... GCGACGACGGTCCCAGGTCCGTAGCCCCGCCC 4212 29 100.0 32 ............................. CGCTGGGATGACGGTGACACGTCGTTCGCCAC 4151 29 100.0 32 ............................. CTGATCGGGGTACTCGTAGCCGAGGGCCACGG 4090 29 100.0 32 ............................. CGGGCGTTGCCGTCCACGCGGCCGTCGTTCGG 4029 29 100.0 33 ............................. CGCCAGGCCACCCGCGACGCGAACGCGACGGCG 3967 29 100.0 32 ............................. CCGTTACGAACCTGCGAAGTTCCAAGAGGGTC 3906 29 100.0 32 ............................. GCGGCGAGGGCGGCGGCCGAATCCATCTCCGC 3845 29 96.6 32 ............................T CACCGACGGGCAGACCTCCTATTACTCGGAGG 3784 29 100.0 32 ............................. CGTCCGGCCGGGGGGTCCAGCTCTGCGAGTCG 3723 29 96.6 32 ............................C CACTTGGGCGCAGTCCGGTACCTACCTGGAAG 3662 29 96.6 32 ............................C TTGTCCATGTCCCACATAGCGCCCTTGGCGCT 3601 29 100.0 32 ............................. CCCCTCGCCCACGCCTACCGCACCGGCGCCCG 3540 29 96.6 32 ............................T CCCCACGTCGGGCGGCGTGTGAGAACAGCTGC 3479 29 100.0 30 ............................. CCAGGTGGCCACCCAGTCGCCCGGCAGCCG C [3454] 3418 29 89.7 32 ..........T..C...A........... GAGTTCGCCGCGCGGGTCGGGTTCGGCCGACT 3357 29 96.6 32 .............C............... ACCGCACTCGCCCGGTTCTCCACCCTGCTGAC 3296 29 93.1 32 .............C..............C AGGCCGTCCCTGACCGAGGACCCTCTCTCTGA 3235 29 89.7 86 .............C..T...........C GGCGGTCGGTTCACAACGGGAACGGACTGGGTGTCGGCCACGGGGGATGCTCCGGCGTAGGCCAGGACCACCGGGCCCCGGTCCTT 3120 29 93.1 32 .C...........C............... CACCGGTACGCGACGCCCGAGGCCGCCCGTCT 3059 29 86.2 32 A............C.......G.....T. GGCGGCACCATCTCCATCCGCCTCGACGCCAT 2998 28 72.4 0 .............C.AT..AA..-...GC | ========== ====== ====== ====== ============================= ====================================================================================== ================== 24 29 95.8 34 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : GGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGATGCTCCCTCGACGTCGCCCTCGCCGTCCACGTCGGTGCGATCGGCCCCGCACCCGCGGGGATGCTCCGCACCGGTACGCGACGCCCGAGGCCGCCCGTCTATCGGCCCCGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTCCATCCGCCTCGACGCCATGTCGGCCCCGCACCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCATCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGCACGCCCGAAAGGGTGAACTGTAAGGCGTCATGTTGACGCCCTCGGGGGTTGATCTGCAGATCTGCACGACACCGCAGGCAATCCCCGTGCGGCGGCGCCACGGCCCGCCGTACACCGGAGGAGTGACAACACCCACCCCGCCCGTCGTCCCCGTCATGCGCCTGGCCGACGAGAGCCGCCCCACCACCGGGATAGGCCAAACCGCCCGGCGGATGCCCGCCGTCCTGGCCCGCACCGCCCGCCTCGCCTGGCGCGCCGACCGCCCAGCCGTGGTCGGCATGGTCGTCGCACAGGTCACGGCCGCCGCCCTCGCGG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5036-4704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000314.1 Streptomyces albidoflavus strain 143 NODE_112_length_15871_cov_40.1968_ID_223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5035 28 100.0 33 ............................ GATGGAGCGGGCCGCGCTGATCGCGGCCGGGGC 4974 28 96.4 33 ........................T... TGACCCCCTCATGAGTCTCGTCTTTGATGGGCT 4913 28 96.4 33 .......A.................... CTCGACGTCGCCCTCGCCGTCCACGTCGGTGCG 4852 28 96.4 33 A........................... GCACCGGTACGCGACGCCCGAGGCCGCCCGTCT 4791 28 89.3 33 A....................G.....T GGGCGGCACCATCTCCATCCGCCTCGACGCCAT 4730 27 78.6 0 ...............AT..AA..-...G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCGAGCTGCGCGGCATGGGAGTGAGCGTGCTGTACGGGGAGGGCGGGTTCCAGCCGAATCCACCCGGCGAGGGCCGCGAGTTCCCATGGCGCCTCGCCCTCGACGAGGTCGAGCGCGCTGTCGGCGCGGGGCGCTAGCCTGCCCCCATGTCCTCCCTGCCTGCGGCCCGGCCGCGTCCTGCGTCGGTGGTGAACGCGGAGATCCGCGCGCTGATGCTGCGCTCGGGCGGCCGCCTGGCTGCCGGAGATAGGGCCCGGTACGTGGCGCTGATCGCGGAGTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCA # Right flank : CTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGTGTCGGCCCCGCACGCGCGGGGATGCTCCTCCGTTCGAGTCCGTGCTGCGGGACGGGGTGCGGTCGGCCCCGCACGCGCGGGGATGCTCCGCCTTCGGTGTCGAACGGGTCGTCAGAGGTCGAGTCGGCCCCGCACGCGCGGGGATGCTCCGCGGCTGATCAGCTCCAGCTCAACACCGGGCTTGTCAGCCCCGCACGCGCGGGGATGCTCCGGCGACGACGGTCCCAGGTCCGTAGCCCCGCCCGTCGGCCCC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9129-7798 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000314.1 Streptomyces albidoflavus strain 143 NODE_112_length_15871_cov_40.1968_ID_223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 9128 28 96.4 33 .........A.................. CCTGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 9067 28 92.9 33 ..........................TA CGTGTCGCCGGGCTGGTACTGGCCCGTGTCGAT 9006 28 100.0 33 ............................ GAGGGCCCGGACCCACCCCCGGTCCTCACCGAC 8945 28 100.0 33 ............................ CTCATCAGGGCGCTGGATGCGGCGGGGGGCACG 8884 28 100.0 33 ............................ GCCGCCTGGCCTCCCGGTGGGCGCGGACGGTTT 8823 28 100.0 33 ............................ GCTTGGTGGGCACCGACTGGGCGTCGGGCCGCT 8762 28 96.4 33 .................A.......... CCTTGAGCTGCCGCACCTGCATGGCGATCTCCT 8701 28 100.0 33 ............................ GGCGTCCTACGAGCTGGAGGCCGAGGGCTTCCT 8640 28 100.0 33 ............................ CGACGCTGCTGCCAACACCGCGGGCGACGTCTG 8579 28 100.0 33 ............................ CGACCGGTACTTGGGCGGCTGGCTGTACCTCAA 8518 28 100.0 34 ............................ GATCACATCGCCGGGGCGGCTCCGTGCCGGCGGG 8456 28 100.0 33 ............................ CCCGTGTGGTCCGCCGAACTCGCCGGCGCTGAC 8395 28 96.4 33 .............G.............. GAACATCGCGGTAGTCGTGATCGCGATCCGGAA 8334 28 100.0 33 ............................ TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 8273 28 92.9 33 ...........G.T.............. GAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 8212 28 92.9 33 ............TG.............. GCGACCACCACGGCCAGGCCGTTCGCCTCTACC 8151 28 96.4 33 .............G.............. GACCGCATCGGGCCAGTGGCAGCACCGCTACGT 8090 28 96.4 33 .............G.............. GAGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 8029 28 96.4 33 ...........T................ CTTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 7968 28 96.4 30 .............G.............. GGGACCGGGGTGCTTCTGGGGGTACCGCGT 7910 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 7825 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 22 28 97.2 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGGCAGACAACAGACTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGGCCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCGGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACCAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCTTGCGATATCGCTTATTC # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCGGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGTGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCATGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 13495-12857 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000314.1 Streptomyces albidoflavus strain 143 NODE_112_length_15871_cov_40.1968_ID_223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13494 29 96.6 32 ............................C TGGGGAGAACTCCCCACCTCCCCAGCTGCCTC 13433 29 96.6 32 ............................A CTTTGGCAGATGTAACAAGCCCAGCGGCGGCC 13372 29 96.6 32 ............................C CGCAGCGACGGACGCGGCCATGACCGCCACTC 13311 29 100.0 31 ............................. CGCGGCCGGGTCCGGCGGACCCCGTGGGCGT 13251 29 96.6 32 ....A........................ CGGCCCGGCCCCTTCCCCGGCTCCTGCCACTC 13190 29 100.0 32 ............................. GCGAGGGGGCAAAAGTGTGACGCATGCGTCAC 13129 29 100.0 32 ............................. CCCCGGCCGCACCAGGGCTTGCCCCCACCGCC 13068 29 100.0 32 ............................. AAGATCCACGACCAGGGACGCGCGGTGAACGT 13007 29 96.6 32 ..T.......................... GCCAAGGCCGCATGGCTCATCGGCCGCATGGC 12946 29 96.6 32 ............................C GTCGGTGAGCTCCAGGTGCCAGCTGCCGGGGT 12885 29 89.7 0 .............C.......G......C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CGGAGCTCCAGACACTGCCTGAGCAGATGCCCGATGTGGCGGCGCCGGCCCCGGACACCGAACGGCCCCCTCCCGTCCGGTGCGCTGGCTGGCCCGGACCTGGCTGGCGCTCTCTGATGCTGATGACCGGGCGCTGGCGCCTCTGCGGGTGCTGCCCGCTGCCTCACCCGCTCTGGCCGGCGCCGTCTCGGCCGCCGTACTGCAGATCCGCCCGGCCTGGTACCGGGGCCGCATCGCCTGCATGGAGATTTGGCTCGCCACGGTCCTCGCCCTTGCGCTCTGCGGCCGACGGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGAGTGTGGACCGAGGACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGACCCCGCCGCCTCTGGGTCGGGGCCCTTGCCGCACCTCCCGTGCCGAAAGGGTGACGTACATGAATGAAAATGAGGCATCCTCGCGGTGACCTCGCAGGTCAGCAAGT # Right flank : CGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGAACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCAATCTCACTGCCGACACGCGGGCGTCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAAGGGACGTCCTTGAAGGTGTGGGTTCGATGCCACTGGTAGTAGGGCTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGCGGACTCACGCGAAGAGCGCCGGCGGGAT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 364-756 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000470.1 Streptomyces albidoflavus strain 143 NODE_161_length_12631_cov_52.6989_ID_321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 364 28 100.0 33 ............................ GACAACGCCGTCCTCGTCATCAACCGGCGCGAA 425 28 100.0 33 ............................ CGAGTAGCCGCCGTACTTCACGGCCACGTACAG 486 28 100.0 33 ............................ CGGGTGGTCGGCGATGAGCGGGGTGTCGCGGGT 547 28 100.0 33 ............................ GATGTTCGGCTACCTCAACGAGTCGATCGCCAC 608 28 92.9 33 ......T..........A.......... GGCCGGGTGGACCGGCCGCCTCGCCTGCGGCCG 669 27 96.4 33 .................-.......... GATCGTCGGGCGGTGGCTGGCGGCCACCGCGGC 729 28 85.7 0 ......A.............A.....GG | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : CCAGCACCCGAGCTGTCCACCACTATAGCCTCGGCCGGCACATGAGGGTGTGGATAGGAGCCAGGTGCAGCAGGCCTTGCGCTCCGTGTCCGTTCTTCTGGAAGGACTGGCGGGGGCGAGCGGTCCGCATCACCGCCCGCCACCGCCAGTCCTTCCAGAAGAACGGACACGGAGCGCACGTCGTCTTCCACAGCGCAACCTTCGAAGGCCGCCTGCGCATCACCGACACCGACCGCTTCACCACCAGCCTCCTCACCGGCCTCGGCCCCTCCCGCGCCTACGGCTGCGGCCTGCTCACCCTCGCCCCACTGCCCGGACAGCAGACCTGAACCATGGCCGACATCTGGTGGAAAGCCGACCCGCG # Right flank : GGGTGTGACCGAGATACGCGCCAAAGGGGCAACGGGATGATCTTGAAGCCCTGATCCGCTCGGATCTACGTGCGGCGACGTGCAGCGGGGTCGCGTTCGGCGACGTGCCGAGCGACCGAGTCGACGCCGGGCCGTGCGTATCGCTCCAGGGAGCGGACGGAAGCGTGGCGGGAGCGGGCCAGCAGCATCGGGGTGGAGGTGCCGTCTTCTGCGTCGTGCGTGAGGGCACTGTGACGTAGCCGGTGAAGCGTCCAGCCGTCCAGATCCTCGATGTCGTCGGGTGAGGCGAGGGGGTTGGCCAGCAGCCGCGTGTTCTCCTCGAAGATCTCCTCAGCGCGGCGGTAGGAGAGCCTGGCCCGGTCGGTCTCCGGGCACACGTCGAGCGTCGGTGTTCCGGCCGGCGCCTTGCGGTCGGTGAGGAACAGCGGGCCGCGGGTGCGGCGGGCGATGAGGCGGGGCAGGAGCTGGGTGGTGCCGGACTGCCAGTGAATCCATTCGAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5237-5448 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPY01000457.1 Streptomyces albidoflavus strain 143 NODE_77_length_19589_cov_52.9617_ID_153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5237 29 93.1 32 ...............A......T...... CCTCGACCGGCACCCGGTGAGGCCGCCCGGTG 5298 29 100.0 32 ............................. GGGCCGCTCCCGGCGGCTCCGGCCTGGATCAC 5359 29 82.8 32 .............CT......GT.....G AAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 5420 29 89.7 0 .............C...A...G....... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTCGGCCCCGCACGCGCGGGGACGCTCCC # Left flank : CACCAAAAAACCGGCCACCGCCAAGAGCACGCCGCCGAGGACGGCGGCCGGGGCGGTGCGCTTCAGCACGTCTGCTCCCCGTGCTGGGTGTACTGGATGACCCGCCACCGGCCGTCGTCCCACTGCTCCGGCTGGGCGGTCGTCCGGTACCTCATCGGCTGCTCGCTCGGCAGGGGCAGCGGCTTACCGTCGCGGGTCGTCTCCCTGTCCTTCAGGTCCAGGCAGTCGGTGATGGTCGCCGTGGGCGGAGACGACTTCAGGTCCACCTTGGCCTTCGGCTCGTGCCCGAGCTTGCCGTTGGCGCGTGTCCCCGCCTCGCGCATCGTCCGGATGTCCTGGCGGATCGTCGCCAGCGCCTCCCCCGAGGCGTAGTCCTTGATGCGCGTCCCCTTCTCGGAGGCCTTCTGGACCGCCACCGCGTGCGCCCGCCACATGCCTTGGTAGGCCGCCAGGCGGCCTGCTCCTCGGCCGACTTCAAATCGGAGGAGGCCGAGGCGGGC # Right flank : CCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGCACTTCGTGATCATGGGCTGTGGGGCATCGGGCAGGCCAGCTGTGGAGTCACTGGTTCATGCCGACAGGCGTGTGGTCAGGGCGTTGGCGAACCGGTGGTACTCGGCGACGACCGGCATGCTCGTGTTCTGCCCGTAGTGGGCGAGTCCGTGTGCGAGGTCTGAGCGGGCCTCGTTCGTGTCCCCGCGCAGGAAGTGAAGGGCTGGGAGGAGAATTCTGGTCCGATCGGGGTTGGGCACGTTTCCGCCTGCCCGAAGGGCGGTCAGTAGTGCGTCTGTGCTGGCGTGCTGCCGGGCGAACGGCAGGCCGTAGGCCTGAACGAGTTCGCATAGCTCGTCGGTAGCGCGTTCCACGTCGCCCGGTTCGGCGACCCGTAGTTGCAGGAGGCTGTTGCCGGGGGTGAGGTGGCCGACCGGTCGGGCGATCGTGGCCGACGTCAGGGAAGCGGCCCCGGC # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGACGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //