Array 1 737499-736273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKL010000001.1 Chromobacterium alkanivorans strain IITR-71 1.16578-assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 737498 28 96.4 32 ...............A............ AAAGCCCTGAAAAGCTCAACCGCGAACATCTC 737438 28 96.4 32 ...............A............ AAATGCCAGCAACGTGCCGCGGTCCGAACAGT 737378 28 96.4 32 ...............A............ AAGGTGATTTGCGATTTGTACGGGTACAGCTC 737318 28 100.0 32 ............................ ATCACGGTCGTAGCCATAGATGTAGACCGTCT 737258 28 100.0 32 ............................ GATTACGTGTCAGCAGGTTGGGACGTGCGGCG 737198 28 100.0 32 ............................ TTGGGCGTCGGCGCTCTGGTGCGCTCCGCGCT 737138 28 100.0 32 ............................ AAGTTGCGGACCCACCGCAATGCCCCATCCGT 737078 28 100.0 32 ............................ ATGAAGCCGCCCAGGGCGCCCACCATCGCATT 737018 28 96.4 32 .....................G...... CAGCCAAGTTTTCTCGTTAGCGCAAAAAATTC 736958 28 100.0 32 ............................ GCGACCTGCTGGCGCGCAAGACGCGGGTGGAC 736898 28 100.0 32 ............................ TTGGCGGCCTCGGCCCCCTTGCGTTTCATCGT 736838 28 100.0 32 ............................ ACCTGGGACGGAGCAAGACGCTGACGCTCGGT 736778 28 100.0 32 ............................ GGGCAGCAGCTGGATTTCGCAGATCCGCGCCA 736718 28 100.0 32 ............................ AAGGCGCTGACCGCGACCAACGGCGGCAAGGA 736658 28 100.0 32 ............................ GAGTCGGCGTCGTCGGAAGTGCAGACCATGCC 736598 28 96.4 32 ..............A............. AGTCCCTTGCGCCAGGCGCTGGACGCAAATAT 736538 28 96.4 32 ..............A............. TCGGCGCACCCGGCCTGGATAGCCAGCCGGTG 736478 26 89.3 32 ..............A......--..... TCAGCTACTACAAGCTGATCGTCGACGGTGAG 736420 28 96.4 32 ..............A............. TGGCGCACTTCGCGTTCTTTGCTGTAGCGCAC 736360 28 96.4 32 ..............A............. GGTCCCCCGAATCCATCACCTCGCCCAAATTC 736300 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.1 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTAGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCAGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAGCAGCGCCCAGCCCCGGCCACCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTTCACACCCCACCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGTGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : TCTCAAGAGGTGAGTGGGGCCTGCCGGCTCTAGTTCACTGCCGGACAGGTAGTTCTCCACAACAAAATCAATGCTATATTAGGCATCTAAATTGACATTGACTAGGGAGAAATTATGGACTTGGTACTTGCCGATGTGGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCAGAGGCCTATCTTGTCCCTGCAGCCCAGTACGAACGCATGATGAGCCTGCTTGAAGACATTGAGGACACAAAGCTGGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGGTGGACCTGGATGAGCTATGAAATTGTTTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTGCCGCCAAGCTGCATGGCCTGGAAGGCTGCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 748017-746909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKL010000001.1 Chromobacterium alkanivorans strain IITR-71 1.16578-assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 748016 28 100.0 32 ............................ TGCCCTATCAGGAAATGAAACAGCAGTACGGC 747956 28 100.0 32 ............................ ATGTGTCACCTCTTGCGCCCCGGACACTGCCG 747896 28 100.0 32 ............................ TACACAGCGACGGCTTTCGCATGCCGTTGAAG 747836 28 100.0 32 ............................ TCCCGGTTGTCCGGGCAAGTTTCTTTGACCTG 747776 28 100.0 32 ............................ TGGAAGCCCGGCGAAGTTCCGTTCCTCAAAAA 747716 28 100.0 32 ............................ AGACACACCACCAGGGCGCCGTCTAAACTGCT 747656 28 100.0 32 ............................ GCTCATGTAGTTCGAGATGTTCGCGGTTGAGC 747596 28 96.4 32 ...................A........ TACCCATGAAAGCTATTTTGTCCGGTTTCTTG 747536 28 100.0 32 ............................ GGACTGGTCAACAGGGGGACGGACGGAGGCCT 747476 28 100.0 32 ............................ GCATAGTCGGCCTCGTCGATGATCAGCGGCCG 747416 28 100.0 32 ............................ TACACCTATGTCAGCAACTGGGGCGAGGAGTC 747356 28 100.0 32 ............................ TCCAAAGAGAAGCCGCCCGGTGGGGAGCACGG 747296 28 100.0 32 ............................ TCGACTGCCGCGGTGGTGCTGTCGAGCTGGCG 747236 28 100.0 32 ............................ TACCGTCATTGCTGATGGAGGGCGCTCCAGAA 747176 28 100.0 32 ............................ ATCAACACCGACGGTGATCACCTCGCTTCGCT 747116 28 100.0 32 ............................ ACCACTTGCATGGCGTAAGGCGTCAGCATCTC 747056 28 96.4 32 ........T................... TCGCCACGCAGCTTGCGCACCCCTTCCAGCCC 746996 28 96.4 32 .........T.................. GGTAAGGCCCATCTTGAAAGCCACCTTACGCC 746936 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCTCCAGCTCGTTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGAATGCAGCTGGTATTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAATAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCGATACCTTAGGGATGGAACGCGACAGCGTATTTTGCCATTAGCATGAATGGCGTGACAGCCAGCAAGATCAACCCTTTTTTCCAGACCTCTCTTCTGACCCTGTAAAAACAATCACTTAGCCTGTGACTGAAAATTTGGGTCAAAGCCGGAAAAATCGCTGCAATGCCTACGCCATAAGGCGAGGGGGCGGTGTAGACTCTA # Right flank : GCCAAAGCGAGGCAACTCAACTCGCTATTCACCCCCATTTTCTGAAAGCGAGCGCAGCAAGAATCGGGTCGCCCACAGGGTCATGCCGCCATAGACTTCGGACATTTCAATAATGCGAAGGAGAACGGCATGGCTTGGCAACTGGAAACCCTAGACCCGGCTTTCGTCGAACGGGCACGACACAAAGGGATTGATGCGCTTGGCCAAGCCGTGCGGCGGATGACGGCCGCCGGCGGCGAACCTTTCCGCGACACGCTGCGTCGCGCCATCCCGGGAGAGGAACTGATTCTAGCGAGCTACAGCCCATTCCACCAAGTCGGGCCATACCGCGAATATGGGCCGGTTTTCCTGGCGGCAGGGCCACAGCCAGAGCCCCCGCCCGAACTGACATCAATACTGCGCCGTGTCGGCAGCAATCCCTACCTCGGCGACCACGTGGCGCTGCGCGCTTACGACACCGAACAGACCATGCTGGAAGCCGTGCTGCTGCCAACACATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //