Array 1 1523-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000008.1 Thermotoga sp. Mc24 Contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1522 30 70.0 37 TG...TT.......G.A..TGC........ TGATTCAATATCGTGGACCACGACTGCAGGAGGGAGC G [1515] 1454 30 96.7 36 ....................G......... ACGACATACTCGTGAACAGATCCAAAACCGTCACGG 1388 30 100.0 40 .............................. AAAGAGTGAGCAAATGCATTGAGGAGTACTCCAGAACCTT 1318 30 100.0 37 .............................. AGGAGCTTCAGACATCTGATACTGTGACACTGGAGGC 1251 30 100.0 35 .............................. TTATTGTCTCACCTGCAACAGATTGTGTTGTATCT 1186 30 100.0 36 .............................. TCCTGAGAAAGGAATATTCGATATTAGAGAGCTTAG 1120 30 100.0 41 .............................. TGGAGATACGATGAGTGGTTCATTACAAGTGCCGTATCTCG 1049 30 100.0 36 .............................. CGCTGAACAACCATACTATGAATATTTGGGAACATA 983 30 100.0 36 .............................. CTGTTTCTCTCAGCCCAAGGGATGCCGATGTGTTTA 917 30 100.0 35 .............................. TGGGAGATGGGGAGGTGATCCTCGTTGATGAAGAA 852 30 100.0 37 .............................. ACGAAGAAGTTATCCCAGCTATGCTCGATATAGCGAA 785 30 100.0 37 .............................. TTGCACTGTTTTGTTTGTTTCGATTGCTTCTTGATAG 718 30 100.0 37 .............................. TGGGAGTTATGAAGGTTTACGCTCACAGTGATGTGAG 651 30 100.0 41 .............................. TAATAGCGCACACCTCCAAGTTTGAAATACGGCACATATTG 580 30 100.0 35 .............................. AAGACCGGGGAAGGAGTTGTGTACGATGTCTTTGT 515 30 100.0 36 .............................. TTCCTTCTGGAGAATACATTATCAATACTATTGAAA 449 30 100.0 37 .............................. CATATAGACGACTCACGGCACAGGGATATTCGAAAGA 382 30 100.0 38 .............................. AGGGAGGAGACTACACACTCGTCTCAGCGAACCTCGTT 314 30 100.0 37 .............................. CGAATACGACTGTCTGAGCTCCCGCACGGTATTCGTA 247 30 100.0 38 .............................. TTGGGGATATCTGCCATGTTTACACCTCCTTTCCCACA 179 30 100.0 36 .............................. AGAAGCAGGTGAGGGTGAGATTAGAGTGAAGAAGCC 113 30 100.0 37 .............................. TTTCACGCTTTGATCTAACAAAAGCTCGTCGAACGAC 46 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 23 30 98.6 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATGTCGAAAGAGACTTCAACGGAAAGTGATTTCATAGAGGAAACTGGTACCGGAAGTTTCGAGCCTTCTGCCGTGTGATTTTCCCAGGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAATGTACCTTTCTGGTTCCTTTGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTATCTTTTCACCGTTGAATTTCATAGTTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCACACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAATAAATAAAAAAGCAGGGGTATTAATCCCTGCTTTCCTCTTTTCATCAAATTTT # Right flank : CCCGTTGAGTTCAAAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 109766-111261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000008.1 Thermotoga sp. Mc24 Contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 109766 30 100.0 35 .............................. GGAGGTGAGAGTATGGATGAAAAAAGAATTGAAAT 109831 30 100.0 36 .............................. GCGTTTCTTCTTGTCACTCTTTCATTGTCAAGATAG 109897 30 100.0 36 .............................. GCATCCGAACTGCCGCTGTTCAATCATTTTTGACGT 109963 30 100.0 35 .............................. GTCTAAGAGCTTGTGTTGTTCTTCTGTGAGTTTTG 110028 30 100.0 36 .............................. CACCCGTGCCCAGCTTGTCACATATGAAGCCCAACA 110094 30 100.0 39 .............................. TTTCAAGTTCTCTCTGCTTCTTGTACTGCTGATATGTTG 110163 30 100.0 39 .............................. AAGTATCTAACATCAACTCCCAGTGCATCCGCTATTTTT 110232 30 100.0 38 .............................. CTCCGATATTTCGGGTTCCATACTTTTGCCGTGAACAA 110300 30 100.0 38 .............................. CACGAGATTTGCAGATACAAGCGTGTAGTCCGCACCCT 110368 30 100.0 37 .............................. AGACAGGACAGAGCGAAATACTCTCAATCACCGCAAG 110435 30 100.0 35 .............................. TGGAATAACTTTCTGGAAGCGCTTGAGGAACTATC 110500 30 100.0 36 .............................. GCGTTCTTAGATATTGTGGCTGGGAGGTGTAAAATA 110566 30 100.0 36 .............................. ATGGGCGTGGTGATTATGTAGGCGTCGCACAGCTGC 110632 30 100.0 37 .............................. TTGAACTCGACAAGCCAAGGAAACTACGCTTTTCGAT 110699 30 100.0 36 .............................. GGTATGTCAGAGCAAAATGGAGGGATGAGGTATGGT 110765 30 100.0 36 .............................. AGCCTCCAGTGCTGTCAACCGGTGTGTATCAGTACA 110831 30 100.0 35 .............................. AGGGATTCGATATTGGAAAACTCGCACTCATTTCA 110896 30 100.0 38 .............................. CGAAGAGGCTGATGCAAAAAACGCGTAGAATTCGATCT 110964 30 100.0 36 .............................. AGGTCTCCGATTGAAAGCCACGGTTTCCCTGTAAAC 111030 30 100.0 38 .............................. GATATCCGAGCGTTCCGAGTGCTTGATAAATTGCTTTT 111098 30 100.0 38 .............................. GATATCCGAGCGTTCCGAGTGCTTGATAAATTGCTTTT 111166 30 100.0 36 .............................. GAGCATTCGAGTGGATACCGTGGCTTGGCGACAAAA 111232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 100.0 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AAGACACCGGAAGAAATCTACTCAACAATTGTGAAGATAAGAAAGATTTTGAAACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCAAGCGATGGAAGCTTCAAGGGTTACATCAGTCTGCCAGATCGCTATCTTTCCAAGAGAGAAATAAAGAAACTCGCGGCAATCTCTCCAAACACCACGGTCAACATCATAAAAAACAGCACCGTTGTTGAAAAATACAGAATAAAACTTCCACCTACGATCTATGGATTCGAGGAACTTCGGTGCAAGAACGAGAACTGTATCACCAATCCCGCACACGGTGAAAACGCCTCACCTTCTTTCGTGAGAGACGAAAAGGGACAGTTCATATGTGAATACTGTGAGACTCCACATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTCACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTATTTTACCCCTGATAACCCACGCGAACTCACTTGATTAGTGA # Right flank : CCATTGAGTTCAGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 92827-91600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000009.1 Thermotoga sp. Mc24 Contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 92826 30 86.7 36 ..C......GT........T.......... TCAAAAGGGAGGCGAGATAATGTGCAGACTGGCCGC 92760 30 93.3 37 .A..................T......... TCGAGGTTGAGGAATCAAACTATGTGACTCCCTGGCA 92693 30 96.7 40 ....................T......... CCGCCGAGATCATTCGTGGTGCTCTTGTAGCACCTGTTCC 92623 30 96.7 37 ....................T......... ACAACACGAAGTTTCATAGGGAGGGTACTGTTCCCTG 92556 30 96.7 36 ....................C......... CTGCAGGGTGCTCGAAAGAATGCTTGGTATCCCGGT 92490 30 100.0 35 .............................. GAATATCTCGAAGGCACCGAAGCTGTCCGGCTGTT 92425 30 100.0 35 .............................. GATAGATTGTACGATTTTGAAACTGACCCGAGCAG 92360 30 100.0 36 .............................. TTGCCACAGTTGACGATGCACAGAATGGCTAGTAGC 92294 30 100.0 35 .............................. AAACCGAACTCCTCGAGGGCCTTTTTGATGAAGAT 92229 30 100.0 37 .............................. AAGGTTGCCAGTTTGGGCGTTTGCTGCAATCAGCCAC 92162 30 100.0 36 .............................. CATGTTCTGCTTTAATGTAGTCTCCGCGGGATTTGT 92096 30 100.0 36 .............................. GATTCTGTAGAGGGGGGATGGGGATGCACAAGGCGG 92030 30 100.0 37 .............................. GTTTTGGCAGTTTGCTTCTGGATTTTTCCAGTATCCT 91963 30 100.0 36 .............................. GCGAATGGGTATTCGAGCACAAAGAAGGGAAGATCC 91897 30 100.0 36 .............................. AAACACCCGAAGAGGCAAAGCAAGAACTACAGGAAC 91831 30 100.0 36 .............................. CTTATCTAAACTTGTAAAAACTATATCAATCAACGT 91765 30 100.0 40 .............................. CCATGAATAATGACTTTATCAGCTGAAAGGACAAGCCTTC 91695 30 100.0 36 .............................. AGAGCGCTACGAAGTTTCCCGACGTGAAAATCGCAG 91629 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 98.4 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CTGCTCCTGAATAGTTCTCGTAGATTTTTCGAGGTTGATTCAGGTATATGAAGTCTGATATTATCCTGACTATAGCAAATGCTAATCCCCCTAAAACGATTGTAGAAAAGATAAAGGAATACGTTATGACTCCAAACAAAGCCTCAAACAATAGTGTCTTTCTAAAGATAAATGAGAAAAAAAAGAACGGAAATAACCACAACAGATTGCTTTCAAAAGCAGAAATAGAGAAGGTCAAAAAGTTTCCTAGAAACGTTTCCCTGAAGAATTTAAGCTTAAAGAATTTCCCCGCCATTTTTCTAAACTTTATTGCCCATTTGTTTCTACAATTCAAAAATTTATTGAATCACTTTTTTGAAAAATATAGATTAGCATCAAGTTAACTTTTGTTTTCCCACAGAAGACAAAACTAGACTAACTTGATCCAAAAAATATTATCTACAAAAAATAAGGAATGTTGAAACAGAAGCGAAAACAAACACGGGCATCAAAATTGAAAT # Right flank : CCGTTGAGTTCGAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTTTCCATAAACCATTCTAACACACAACAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAAATAAATTATATCAACCTACGTCGGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAATTAACTGTTAACTTCCTGAATTCAAAGCACTTACATGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTCCTTCCACTGCCAGTCACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 16873-18628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000006.1 Thermotoga sp. Mc24 Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 16873 30 100.0 36 .............................. GCTCGTAGCCTACCATCGCTCTTGCTTCGTTCGGTG 16939 30 100.0 35 .............................. ATTGTATATACTGACAAAGGAGTTTTCTATGTTAA 17004 30 100.0 36 .............................. TGTGGTTTTCCCCACTCCTCGTCGGCCCGTGAGATA 17070 30 100.0 35 .............................. AAGGACAGGCAACTTCCTTCTGTCGACGTTCACCA 17135 30 100.0 36 .............................. TCAAACAGAACAATGAAAGCAAGGTATAGATGTGAA 17201 30 100.0 36 .............................. CAAGGTATATTTTCAGGATACACTGAACTTTTTCGG 17267 30 100.0 37 .............................. ACGTTGCGTTGAAGCAGGCGCACTATATGGTTATTTT 17334 30 100.0 36 .............................. TCGGAAGTCGATTTATGTCCTTTGGGCTCTGTCAGA 17400 30 100.0 38 .............................. AAAAGGAGAAGATCAAGAAGAAAAAGAAGGTGAGAGGA 17468 30 100.0 36 .............................. CTTATTCACGAAGATAATCATGAACTCGCTTTATGG 17534 30 100.0 37 .............................. TGATATTCCTCTCGTATATTGTCTGGGTCGGGGTTTC 17601 30 100.0 36 .............................. TGCAATATGCTTTTCTAAAGCTAACAGACGAGGGCT 17667 30 100.0 36 .............................. CTGAGCGCTCTCGCTTGAAAACAGTGGTTGCGGGAG 17733 30 100.0 38 .............................. AAAATTGTCTGCGTAATAGTCTGTGCTCTTGCGGGCGC 17801 30 100.0 37 .............................. TCCTGTACTGGACATACCACCATTCGAAATCTTCGTC 17868 30 100.0 39 .............................. GGGAGAAGGGTATCCCATCGACGACGATATCAAGATCGC 17937 30 100.0 43 .............................. ATGCACCACCCCTACATCCAAACTGCAGGTGCTCGATCATCTT 18010 30 100.0 35 .............................. GGTTTTGACAGTTTTCATGCCGAAACAGGAAATTA 18075 30 100.0 36 .............................. ATCTAACGGAGCGTATGAAACTGCTAAAAATCCTGC 18141 30 100.0 36 .............................. GGCTCGTATCCGACCATTTCTCTCGCTTCGTTCGGT 18207 30 100.0 35 .............................. CAACAGTTTTGCTGTGGCTGTTTTCTCCTTCACAA 18272 30 100.0 34 .............................. GAGAAGAAGTTCAGAGAGATAGTGCTTGAGGAAT 18336 30 100.0 36 .............................. TGTCTAAGAGCTTGTGCTGTTCCTCTGTCAATTTTG 18402 30 100.0 36 .............................. GAAGCGGTCACGAACGCAATCGAAGGACTCGTGCGT 18468 30 100.0 35 .............................. AAACGGATGAAGAAGCGATAAGAGTAGCGTATGCT 18533 30 100.0 36 .............................. TCTTTCGCAGACAACGAGTGACAATCTACAGTCGTT 18599 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 27 30 100.0 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CATAGACACGAAAAACAGACCCGACAGATTCGAAAAGCAAAGGAAAGACTCTCCCTCGAGGGAAAATCCGCTGGAAGCACAAATCGTGAAAGAGATTGTGGAAAAACTTCTTTCCATGGGAGTGAAAGAGGATTGGATCGGGATTATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGCTGATCGAAGAAGAGGTGGAAGTACACAGTGTAGACGGTTTCCAAGGAAGGGAAAAAGAGGTCGTCATCATTTCGTTTGTTCGCTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATTTGAGAAGGTTAAACGTTTCGCTCACACGAGCAAAAAGAAAGCTGATAGCGACGGGAGATTCGAGCACACTTTCTGTTCATCCAACTTACAGAAAATTCGTGGAATTTGTGAAAAAGAAAGGAACCTATGTGATCTTTTGACCTGAAGCATATAACAAAAAACATTCCCCACTCACGTGGGGATTTTTCCATTTAT # Right flank : CCCATTGAGTTCAGAATAAATTATACCACAAACACAAACTGAAAGCAAGATGTTTTTTGAACTTCCATATACTCATTTTCCATAAACGATTCTAACACACAAGGGGGTGTTTTCAAGAACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAGAGAGAGAATTCAAGGCAAAAACAAAAGATTAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTGGGCAAAAATCGATTAGTTCCATATTTCACAAATAGATGAAAAAAGTTTTCCCTCAAAGAGTTAGAAGTTAACTGCAAGATGTATGAATTTCTGCTACTTACACATCATCATTCATAACAAATTCTCTTCATATTGTTTCGTCTTATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCTGATGCTAAATACACACACCACCCACTTTGTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 48740-47448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000007.1 Thermotoga sp. Mc24 Contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 48739 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 48674 30 96.7 36 ....................G......... GAACACTCGAGCAAGATTTTGTGCTTTGACAGTCGT 48608 30 96.7 36 ....................G......... ATACAACATTGTTCCACATGTCTTGCCAATACTGCT 48542 30 96.7 39 ....................G......... AAAGAACGCGAGCATTCAGTCGAAGCACAGAAACTTCTG 48473 30 96.7 38 ....................G......... GATTCTTTTGAGTCTGTTCAACTTGTCGCTAATGCGTA 48405 30 96.7 37 ....................G......... TCTTCGATGTACATTATTGCGTCTCCCGCTGATACTG 48338 30 96.7 36 ....................G......... CATGAACACTGTTGTGCCACTAGCTGAAATGATTCT 48272 30 96.7 36 ....................G......... ATATCTTTGCGACAGAACATGTTGAAGATACGGAGG 48206 30 96.7 36 ....................G......... CAATTACCGCAACAATTCCACCTGAAACAATGGAAG 48140 30 96.7 38 ....................G......... GCCCTGCAACTCCTTCCACATCTTTTCCACGCTCTGCT 48072 30 100.0 38 .............................. CGAGGTGTTGAGATTGAAAGAAGATCCTCTTTATTCTG 48004 30 100.0 35 .............................. CACAGTATGGAAAGCTTGTCTCATTGCTTCCTGCT 47939 30 100.0 36 .............................. TAGACATTCCTGTTGCCGGTAGCGTTGAGTATTCAT 47873 30 100.0 36 .............................. TGGTTCGCGACGTTGTGCTCGAGACGGTGTGTAAAG 47807 30 100.0 36 .............................. GAGTGTTCGAATGGATACCCTGGCTTGGCGACAAAA 47741 30 100.0 36 .............................. GTTACCGTAATATTCAAACTGATTTCTTTGGAGTCA 47675 30 100.0 36 .............................. TTGAAGGTGAAGGACGATGTCGGATAGAGAATTTTA 47609 30 100.0 36 .............................. TCAACCTCGGTCATAGAACAGTGAAAGGGCTTGATC 47543 30 100.0 36 .............................. TGAGGATCCTTGCAAGTATCGAAGCAAATGAAGAGG 47477 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 97.7 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTTAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAATCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 32457-28828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000002.1 Thermotoga sp. Mc24 Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 32456 30 86.7 39 .....TG.....A.........G....... AATGAGGTTATCGCTTTTGAGTCGTATCACTGGTTTAGA 32387 30 100.0 37 .............................. CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 32320 30 96.7 39 ....................C......... CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 32251 30 96.7 36 ....................C......... CAACGTCTGCCTCGAACGAGATGAGATCTCCAACCA 32185 30 96.7 37 ....................C......... GGTTTTCACTCACATATTATCACAAATTCCCGGGTTG 32118 30 96.7 37 ....................C......... GACGAGTACGTTCACGCTTTGTAGCAAGAGTACGACA 32051 30 96.7 36 ....................C......... GCCCATGTTACTTCATAGTTACCGCAGCGAATACTT 31985 30 96.7 38 ....................C......... TGAAACGTGGTCCATTTCCACTATCAAGCGACTTCTGT 31917 30 96.7 36 ....................C......... ATTACTGGAATCTCGATCCCTTTTCGGTAGTAACTG 31851 30 96.7 36 ....................C......... TAGATTTTATGAAGTATTCACAACACAAAAATCATT 31785 30 96.7 36 ....................C......... CCCACTTCCAGGCGTGGGCATAGAAGTAGAAACTGA 31719 30 96.7 41 ....................C......... TCTGTAGCTCCACCACAACATAATCCACAAGTGCATTATCA 31648 30 96.7 38 ....................C......... ATTATTCTTCAAAGGACAATTTACTTCTCAAGCACCTT 31580 30 100.0 36 .............................. GGTCCCAAGCAAGTGGTAGATATTTTGTTGGATCTC 31514 30 100.0 36 .............................. GTTTCCGTTCATTTTTATCCATGTCGCCCGCCGGTT 31448 30 100.0 37 .............................. GCAAACAGGAAGGTGGTTACACAGGGCCTGGTCCTGT 31381 30 100.0 36 .............................. GGGGGTGCTCCATGTATTTGTAAAAGGGAAGAACTA 31315 30 100.0 36 .............................. ACGTTCTATACGTCGATTGGGAATTAGACAGGAACC 31249 30 100.0 35 .............................. CGGCGATAGGCATGCGGCGGATATATGCAAATTGT 31184 30 100.0 35 .............................. ATAAAAACGAAACAGAACCGCAACCGTCGTGTTAT 31119 30 100.0 37 .............................. ACGGCGAAAGGATAGACACTTCTTCCTTCAGAGTGGT 31052 30 100.0 35 .............................. GATCTCCTGCGTAATTGCGCATGGTTGTGTTTTCG 30987 30 100.0 36 .............................. TGCAATGATGCCTGCCCCCGGTGTGTATGTAGCAAA 30921 30 100.0 35 .............................. TCTTTCACGACGGGATCTGCACGCCCGGAGCGTCT 30856 30 100.0 35 .............................. TGAGATGATGGGACTTTTTGCAAGAACTGACACCA 30791 30 100.0 36 .............................. TAAAAGCAAGTCAAAGGGGCGAAAAGCAAAGCTCTA 30725 30 100.0 35 .............................. TTCTGCTGTATCGAAAATGTACGTCTTCGGTGCAA 30660 30 100.0 36 .............................. GAAGTCTCGCTACAAAGGTAGTTTTTCCTGTTCCCG 30594 30 100.0 36 .............................. TTGAAGAATTTGAACAGAAAGTCACATCGGAAGCAA 30528 30 100.0 41 .............................. GAGCGAACAGAAGAAGCTGAGGAGAAACGAGAGGAAAAAGA 30457 30 100.0 36 .............................. GTAGATAAGCTGATTGACAGAATTGAAGCAGGAGAA 30391 30 100.0 35 .............................. TAGGAAGGTATATCCGGCCTGGTATGAAGATTTGA 30326 30 100.0 37 .............................. TTTCTGCAAAATAGTGCCATTTCCGTGACGTTTCCTT 30259 30 100.0 35 .............................. TTTGAGTCCGACCCACAGCATTGTTCTAAGCTCTT 30194 30 100.0 37 .............................. TCAGAATGCAATTGAAACAAACAAAACTGTGCAGGAA 30127 30 100.0 35 .............................. CTTGCCTTGGTACCTTCCAAGCAATTATGGGTGTA 30062 30 100.0 36 .............................. AATCTTTATTAGCCAAATAATTCCCAAATAAGCCAA 29996 30 100.0 36 .............................. GAACAACAGATTCTGTGCTTGTCGCCTGTGTGGCTG 29930 30 100.0 36 .............................. CACGCTGATCAAAGATAGAATTACTTTTCAACTCCT 29864 30 100.0 36 .............................. CTTTGTTGCAGAAGGTGAAGCGATCATCACTTCTCT 29798 30 100.0 37 .............................. TTCGTGTAGTTCAGTACGAAAAGGTTTCCCTTGTCAG 29731 30 100.0 37 .............................. TTTTTACCGATCCCGCACTTGCATTAACACAAAAATT 29664 30 100.0 37 .............................. GTAGTCAAAACGGTATGCTTCTCTACCACGAGCAGTC 29597 30 100.0 37 .............................. CCAATGTCGAATCCTTCGAGCACGTATTTCTTTTCGT 29530 30 100.0 43 .............................. ATTGAAACCTTGATCTCATTGGGTGTAGATGCAATAGAATATT 29457 30 100.0 38 .............................. TGGGCTCGGGGGCCCACGGAAAAATCTCGTTCAGACTA 29389 30 100.0 38 .............................. AAAACAAAGAAAATGAATTTACAGTTGAATGCAGTGAT 29321 30 100.0 37 .............................. AATAAAAGAATATGTGGAAAAAGTCAAGGGAAAAAGT 29254 30 100.0 36 .............................. AATGCCATCGATCGGTTTCAAGCTCATTTTCGAAGA 29188 30 100.0 37 .............................. TTGGAAAAGGTATCGAAGCGCTCGGAAACAAAATAGC 29121 30 100.0 35 .............................. TCAGTATTTCGAGAAATACCCCGTCGATTATGTCA 29056 30 100.0 36 .............................. CTGTGTTGGTAGAGCATTCTGTTTTTCGAGAATTGT 28990 30 100.0 37 .............................. ATGGAAAGGTGTCACCTGATGTGCTTGACAATTTACT 28923 30 100.0 36 .............................. TGATTTCTTTTGTTTGAGGGTCGAATTGTAAGATAG 28857 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 55 30 99.1 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAACTACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATAGTGCTCTCATATCTCACGGAATTGGAT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAATGAAAGAACGCAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGAGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCTATCTTCCAGTGCCAGATACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 44621-45719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000002.1 Thermotoga sp. Mc24 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 44621 30 93.3 35 ......G.............G......... TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC 44686 30 100.0 37 .............................. CCTCCACCTTGGGATTGGGATACCTCAAAGGGAATAT 44753 30 100.0 39 .............................. CAGAAGGCATGCCATCCTGGTGTGGATCGCAACAGCAAA 44822 30 100.0 36 .............................. AGGACGAGGAAGAGGAGTTTCTTTACGTTGCAGAAG 44888 30 100.0 37 .............................. CCGGATGCAGGAATCAGCGCCGTGAAGGATGCGCTCA 44955 30 100.0 36 .............................. TCCAGACATATATCCACTTTCGTTTTTGTTCTATTT 45021 30 100.0 41 .............................. CGGCGGCACGGATTGAAGGGGGTACGAGCGTTATGAAAACA 45092 30 100.0 36 .............................. CCATGGTAGGACATCATTCAGATTGTGGTTGTCAGA 45158 30 100.0 36 .............................. TTCTTACTACATCTCTAAGTCCTTCCATAGAACCAC 45224 30 100.0 37 .............................. CCTGATGCAGGAACCAGTGCTGTAAAGGATGCGGTCA 45291 30 100.0 38 .............................. ATAAATATAGCAAAAGTGTCATACCAGTCACTTACTCT 45359 30 100.0 35 .............................. ATAAAGCGACGGTAAAGAAACAGGTAAGACATAGT 45424 30 100.0 36 .............................. CAGAAGAACAGCACAAACTCCTCGACAGACTCATCG 45490 30 100.0 36 .............................. CATTTACAATATACCTACTCATGATCGTCAGAATTT 45556 30 100.0 38 .............................. GGAGCGATTTGAACCAGTCTGCGAATTTTCTGAGAGGT 45624 30 100.0 36 .............................. TAGATCTCTCTATATTTCAAAACAATAAAGCAATGG 45690 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 99.6 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCATCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTATCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 77598-79097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFH01000002.1 Thermotoga sp. Mc24 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 77598 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 77663 30 100.0 36 .............................. GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 77729 30 96.7 37 ....................C......... AGCGATAAGAGTTTAGTGGTAGTAACCAACATGGGAA 77796 30 96.7 37 ....................C......... GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 77863 30 96.7 35 ....................C......... CATGTGTACAAAAAAGTTGAGTATTACATCGATGG 77928 30 96.7 38 ....................C......... CTATTGTGATACGGACTCAATTATTACGGATGTGGATC 77996 30 96.7 35 ....................C......... GGGAAGGCAAGGCGGGAGGGAGATCAGGATGAAGG 78061 30 100.0 41 .............................. AGTCCGTTGCCAGACAACACCAGCAATGCTTCGCAAGATAC 78132 30 100.0 37 .............................. GGGGTAGTCAGCTAGCAAATGCGGAAGGTTACTTCTC 78199 30 100.0 36 .............................. CGAACACGTTAGCCATCCTTCCCGCCTCCCGTAAAT 78265 30 100.0 36 .............................. CAGTTATATGTACACTTTCCGACCAACTCCCAGAAC 78331 30 100.0 39 .............................. TCGATCTCGAGCTTGCGTACAAAACTGCAGTTGGATATC 78400 30 100.0 36 .............................. TTTTTGTGCTCCAATCATCCACTGTTTCTTCGCCGA 78466 30 100.0 37 .............................. GCGTATCGCAACGCATCCATCGCGTGGTCGTTAAACT 78533 30 100.0 38 .............................. ACAGTTCTTGTTGTAAATCTTTTTACTACGACTTTCTT 78601 30 100.0 37 .............................. GGTGGTTATATGGATCGCAAAGAAATAGTTTTTAGAT 78668 30 100.0 37 .............................. GGCGGGCATCAGCCCACCTCCTTTCGTTCAAGGTTTT 78735 30 100.0 37 .............................. TTGCTTGTCTCACCTCCTTCTATAGTTTGCCATGAAG 78802 30 100.0 38 .............................. CGCGAAGAGGGTTCACTGCCGATTGGATCTATTTATTT 78870 30 100.0 37 .............................. TTGACTGGAAGCCGCTTGCTGTGTCTCCGCAAGAATT 78937 30 100.0 36 .............................. CAGATTACCAAGGCTTAGGAATTGGTACTTCATTTT 79003 30 100.0 35 .............................. TCCTATACATTTCTCCACATCAGGTTGCTGTGAAG 79068 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 23 30 98.8 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //