Array 1 120310-121782 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000025.1 Candidatus Methylobacter oryzae strain KRF1 scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 120310 36 100.0 37 .................................... CTGCTTAAACAAGCCAACACGATTAACTCGTCTTGGA 120383 36 100.0 36 .................................... TTTCACTGTCGAGTTGGTCAGTTCACACACCAGATC 120455 36 100.0 37 .................................... CGTACTCATTTTGCCGATGTTCAGGTCGTTCATTTTA 120528 36 100.0 36 .................................... GTGAATACCGGGCCGTGCATCTTGGCGGTCATGCGC 120600 36 100.0 36 .................................... GTTGGTTCTAGGGTCTTGCCTAAGCAATAATCTTAA 120672 36 100.0 35 .................................... TCGGGAGCAAAATGCTTACTTTAGCAAAATCAGCA 120743 36 100.0 35 .................................... GGGTTGTGTTGGCACGCATTGCGCACCAGCGGTTT 120814 36 100.0 36 .................................... TCCAGGTGACGCATGTGCAAATAAAGGTATAACGCC 120886 36 100.0 35 .................................... TCGGCTTACCCATTTTGGCTTCCGTCATAATCAGC 120957 36 100.0 36 .................................... CACAGCCGGGCTACTTTTTTAAATCCGCACCTAGCC 121029 36 100.0 37 .................................... TTGCTTATCGGATAATCATCAAACTTGTCCTCCGGGC 121102 36 100.0 34 .................................... ATGTTTATCATGTCTAGCTTGCTTTTATTTTTGG 121172 36 100.0 36 .................................... TCAGCCGCCGCCAACAACTCGGTCAGCACATCGGCC 121244 36 100.0 36 .................................... AACGGGAAAGTCAGGAATGCCGGGCGGCAACATTGA 121316 36 100.0 36 .................................... TAAATGGCAGTGGGAGCTACGGAGCATATTCCCTTG 121388 36 100.0 35 .................................... CAATGTTACTACCAACTCCTTTGATGTCACGGTAA 121459 36 100.0 37 .................................... GTTGGCTTAATCGTCTTGACTCAAACCAGGATCGGGC 121532 36 100.0 36 .................................... TAACATGGTGGCGTCCTCATGGTTCAAGGTTCAAGG 121604 36 100.0 35 .................................... AGTGCGGCTGTGCTCCTTAGTCGCGTTCCACCACA 121675 36 100.0 36 .................................... TCAGCTTTAAAGGTCGATTGGAACGGAAAGCCCGTC 121747 36 94.4 0 ...............................A..A. | ========== ====== ====== ====== ==================================== ===================================== ================== 21 36 99.7 36 GCATTCTCCGGCATAACGCCGGAGCCTCATTGAAGC # Left flank : GCTTACGAACATCTTTACATTATTACTTACGACATTCGCGACGCTAAACGCTGGCGGCGGGTGTTCCGCTTGATGAAAGGCTACGGCGACTGGCTGCAACTGTCGGTGTTCCAATGCCGCTTAAGCCGTAGGCGCCATGCGGAACTGATCGCAATGCTGGACGGCATCATTCATCACAGCGAAGACCATATTTTGATCATGAACATCGGTCCCGCGGAAAACGTCAAGCCGTCGGTGGTGAGCTTGGGCAAGGAGTTTGAAACCGTGGAACGCCAACCGGTGATCGTCTGATGCGGATTGTTCGCCGCCGGTTGACGAGCGCTGTAGTGGCGCGCAAAATGCCCTCAGCGCTCGCAGGTGAATGGCTCTTTAAAAATCAGCATGTTATGAAAATCGGCTATGCGTCGGGCGGATTTTTATGTACAGTTGCGAGGCGTTGTAGAGCAGCACTCGCAAACAGTCCGCGCAGGCCGCGTAGATCAAGGCTTCCAGCGCGGGCT # Right flank : CGCCCTTTCAGCATGAATCTGAGGTAATAGTTATGCTTATAATGGAAAGATTTACGTGGATAGCGCTATCATGCACACTCTGCGGGATGGCTCGATTAGCAAGTAGCCTATTGGATAAACACTCTTTATAATATGCGGCTGACCGCATTGGGCGACGGATATTTTCCTCGGCCGAATGGCTTTCAGCTTTGACCCTCAACGTAATAGATTGAAACAGGAACTATTAATGTCTCAAAAAATTTCAGATGTAGTAAAACCCGGTGTTGTAACTGGCGAAGACGTACAAAAAATCTTTGCAATCTGCAAAGCCAACCAATTCGCATTGCCTGCGGTAAACGTCATTAACACTGATTCGATTAATGCTGCGTTGGAAGCGGCCGCGAAAGTAAAATCGGCCATTATTATCCAGTTCTCCAACGGCGGTGCGGCGTTTGTTGCCGGTAAAGGCTACAAAGGCGAAGGCCAAATGCCTTCTATTTTGGGCGCGATTGCCGGCGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCTCCGGCATAACGCCGGAGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 33808-35926 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000020.1 Candidatus Methylobacter oryzae strain KRF1 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33808 32 100.0 33 ................................ GAGGCCTCAACGTCAGACCATCCGTTATTAATA 33873 32 100.0 34 ................................ TATCTATATAAGGAAACGTATCATGAACACATTA 33939 32 100.0 35 ................................ TTAGTCTTAGAAGCATCATGTATAATCTTTGGCAA 34006 32 100.0 34 ................................ CTAAGGTGCATATTATACGTACATATACGTAGAT 34072 32 100.0 35 ................................ GGTGTTTAACCTTAGCGTGGCTTGCTTAGCGAGTA 34139 32 100.0 32 ................................ ATACAGGTGTAGCAACGCGTAACTCATTACCT 34203 32 100.0 33 ................................ GTGGCGTGTGCGCCATCCTCGTCGGTACTATTG 34268 32 100.0 33 ................................ AACAAAATGGCGCAGCGCGAACGCGAAGAAATC 34333 32 100.0 34 ................................ CACTGATTTGTAGCAACAAGCGCCCAAGTATTCG 34399 32 100.0 34 ................................ ACGTAATAAAGCGTTACCTCCAACCCAACAGGAG 34465 32 100.0 34 ................................ TCATAGGCAATATTATGCGCAGGCTGTAACTCCT 34531 32 100.0 33 ................................ GACCAGCCGGAGCCATGCACGTAGGCCAAAGCG 34596 32 100.0 33 ................................ CGTAATCATTTGTGCTAGATAGTCGTCCTTATA 34661 32 100.0 35 ................................ GTAGTCGTAGTCGAGTACAACAATACCCCGTGGAA 34728 32 100.0 32 ................................ TAATGATAGATATAGCTCCTATGGAGGAAGAG 34792 32 100.0 32 ................................ GGTCATATTGTCGCGATGTCCCATGCTAAAAA 34856 32 100.0 35 ................................ GTCATATTGTCGCGATGTCCCATGCTAAAAAGGGA 34923 32 100.0 33 ................................ ATTTCCATGCTGTAATGGATCGGCATCACCAGC 34988 32 100.0 34 ................................ ATGAAACCAAGAATATGTGCCTAACGCCCCGGTA 35054 32 100.0 33 ................................ ACCCCCGATGCGTTGTCCATATAAATCAACGAG 35119 32 100.0 34 ................................ GATGGAATTTGCTCAGGCCTGGGATTTATATAAA 35185 32 100.0 32 ................................ AGGAAGTCCAGCGCCGTCAAACTCATCAACGA 35249 32 100.0 32 ................................ AGCATCGTACGCCGTCTTGGCCGTATCCAATT 35313 32 100.0 32 ................................ TTATCAACAACCGGTTGATAAGGATGCGGATC 35377 32 100.0 32 ................................ CCACATGCAGTTATTGTTTTATGCTTATGCCC 35441 32 100.0 32 ................................ ACCGATGTCTTCCAGCACATAGCTAGCCAGGG 35505 32 100.0 34 ................................ AACCAGATCGGCAGGCGCTGGATAATCGGCAACG 35571 32 100.0 33 ................................ TGTTGCTAAGCCTCTGGATACATTAGCAAGACC 35636 32 100.0 32 ................................ TTAATTTCAGCTTGAGACTGGAATTTCTTTAA 35700 32 100.0 32 ................................ TGCTCTACGTTTTGCATCGTCTTTAACAATCG 35764 32 100.0 34 ................................ AATTTGCGGTAACATGAATTGCCCGACAGTGCCA 35830 32 100.0 33 ................................ TTCGATCAGGATCACATGCGAGTTTTTATCCCT 35895 32 96.9 0 ..............................C. | ========== ====== ====== ====== ================================ =================================== ================== 33 32 99.9 33 GTCGCGCCTCACGTAGGCGCGTGGATTGAAAC # Left flank : ACAGACGCGCCATCATGCGCTCTTCGGTTTCCGAAGGATGCAGGGCAATGGTCAGGTTATGCGATTGGTAATAGCCTCTGTCCATATCTGAAATTTGGCAGTCGGCTTTATAGATGGTTGACTTAAGCGCCATTGAGCGTTTTTAGGATTCTGAAAATAAACGCTTATTCTAACAGATTTGCGCCTATTCAGGCGACGTTCGGCTTTTATTTATTGGAAAGCATGTATTTTTTTGACATTTGCCGATGCTGTTTTGTCATGTTGAATTGAGAGCACTGAGCTGATTAGGGCAGTGCCAATTGAATTTAAACGGTCTATTGCTGAAATGCGAACTTGGAGCGCCCATAAAAACCCGATGTTTCGCGTTTTTGGTAATGTATTGATTAGTATGTGTTTTTCGATTGGTAGAAAATGAGCTAAAATGCGTTTGGCGGATGTTTTGACCGGTTCGCAAATATTCGGTTTTTCAGCCGTTAAATTCAGCCGGTTAAGCATACGCC # Right flank : CGGAGACTGCCCTGCGGATAGCTTCCGTTAGCGGATACTGGTGCTCACTACCGGGCTGACAGGCCCCGCTGCTGTTCGTCATCGGCAATCCGCTGGTTGCAAAAGCGCAGGACGAATAAGAAAAACCGGTTAAATAAGCCGGAACAAACTATTGGCAAACAGTCTTGGCGATTTTAACAAAGCCGTCCGGCGCATATGGGGCGTTTTTGCGTCATTTCACCTGGTCAGTAAGGCATATGCCGCATTCCTCTACCTCTCCCCAACGAATAACTCTATTCAATATCAATTCCCTAACGATTGGCTTGGTTATTGCTGACTGTTTGAATCTTCCGGAAAGGCATTTTCAATTTGTTAGAAAAATTATCGTTATGACCAGCCTTAGTCTCAATATCAACGACTTGTTTTTAAATCATCGGCAATCATTAATTCGAACTATCTACCGTATTGTCGGTTGTCCGCAAACGGCCGAAGATCTGGCGCACGAGGCTTATTTAAAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGTAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 92-1288 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000071.1 Candidatus Methylobacter oryzae strain KRF1 C835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 92 32 100.0 35 ................................ GGTGATTAACTGCAACAATAGAAAGTGGTTGACTG 159 32 100.0 32 ................................ CGACCTAAGACATGGTACGTTAATAATAAAAA 223 32 100.0 33 ................................ TTGAGTTAGCATGACTATATTCCGAAGGCTAAA 288 32 100.0 33 ................................ AACGCGTTACCGTATGCATCCGGAGCAAACAGC 353 32 100.0 34 ................................ CTCCAATGCTTGCGCCGCTTCCGTGGCCGTGTAT 419 32 100.0 32 ................................ GCAAAACCTTGCAACAATAAAATGGATTGTTG 483 32 100.0 33 ................................ GTCTCCACATAAGTTTTGTGGTGTTTTGTGGGC 548 32 100.0 32 ................................ AACATATGGGGCGTAATCGGCCCCGGCGTAAA 612 32 100.0 33 ................................ AGTACGGCGACTTGGAGGCTGAAACGGCAGCCT 677 32 100.0 33 ................................ TCAACCTGCCTACTCGGTAGCTCCGTGATTCGA 742 32 100.0 32 ................................ TGCGAGATCATGACGTTGCCAGCTATTATCCA 806 32 100.0 31 ................................ TTAACGCGATCTGACCGGGTGCCGGTTGGCT 869 32 100.0 32 ................................ CGCTTAATAGCGTCAATAAACCAAGTGCTGTT 933 32 100.0 33 ................................ CGCGTACTCTTCCGCATGGATGCTTTTTAACAA 998 32 100.0 33 ................................ CTGCTCCACCACCCTGCGTAGCCAGCGATGCGA 1063 32 100.0 32 ................................ CGTTTGAAGTTCAAAGATTATTACGATGCCCG 1127 32 100.0 32 ................................ TGTATTTTGTCATTGATCGAGCGCATGTAATT 1191 32 100.0 34 ................................ GCCCAGCACTTGGCCTCGGCCTTGGTGCAGCAAG 1257 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 19 32 100.0 33 GTCGCGCCTCGCGTAGGCGCGTGGATTGAAAC # Left flank : CATTCCGCCAATGGCTATTTGTCGCCCGTAGACTACGAATTGCAGCAAAAAGCCGCTTAACCGTGTGTCCGGGAAAGTGTTGACACATCAGG # Right flank : CACTCATAGGCGTTTCCAATGCGCCGCTGGGCGCGGCGTGGAATGCTGCTTAAAAACATGGAATTAGCGTGAGCAGGCCGGCTAATGCATGCCTTACTCACGCGATTGCGATTAACCTTTGCCGGGCAACATCCCCACCGATCCGGGCTTGATGCGTTTGCAGGTCACAACGACATCTTCCAGATGGCACTGGCTTTTGCCCTGGTTGGCGCCGTTGCACGGTGTACAAGCCGCTTTACCTTCGTCTTTGACTTTTTCGACATGCCAGCCGTAACCTTGTGATTGACAGAATGTTTTGCTGTATCGGGTGATGTTGTAGGGTTTCGATGCGATCGCTATGGCGTCTGATTCTGTTTCACAGTTTGCCGAGGGCAGTGTGTTAGCCATCAGGTCGCGGTAGATATATTCTGTCGCCGGTGCGGTTCCGGAAAAAAAAGCCAGCGCTGCTGACAGGCATAGCAAGTTAAGTTTCATAGTTCTCTCCTGATTATTCTTTAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCGCGTAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8833-10301 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000075.1 Candidatus Methylobacter oryzae strain KRF1 C855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8833 28 100.0 32 ............................ TGATACTGCATACGCCAATCTGCTATCCCTTA 8893 28 100.0 32 ............................ GATATTGGCCAAGGTGATTGGCAGGAAATGGA 8953 28 100.0 32 ............................ TCGCCAATGCAGTGGGTTGAGTATTTTGTAAA 9013 28 100.0 32 ............................ GATATAGTGGTAAATGCGCACTGTTTCGACAG 9073 28 100.0 32 ............................ TCCAGGAAATCAGATTCGGAATGTGTGCATTC 9133 28 100.0 32 ............................ AGCACATAAATAATTTATAAATTAAACAAAGA 9193 28 100.0 32 ............................ TTCAAGGCGCCTCAGGTATTCTTTTGCTTCAT 9253 28 100.0 32 ............................ ATCACCGGATCGTAATCCCGGTTCAAAATCAG 9313 28 100.0 32 ............................ GTCAACAAGGATTGGATTAGTCCAGCCGAGCT 9373 28 100.0 32 ............................ TATTGAGCATAAGGGCCGCGATTTGACGATGG 9433 28 100.0 32 ............................ TAAGGACGATGGCGATATCCGGGTTAATGAGC 9493 28 100.0 32 ............................ TCAAATTTTTTCAATATTATACATGCATATGA 9553 28 100.0 32 ............................ CTTACAAACCGCATTTGGCAACATCATCAACC 9613 28 100.0 32 ............................ TCAAGGCATGAATCCTGAATTGGGCTGCTTCG 9673 28 100.0 32 ............................ ATCTTCAGGGATAGGCCGGTCGTAGTTGATCA 9733 28 100.0 33 ............................ CGATAGCGCCGAACTTTCAGCAGAGCTTACGGG 9794 28 100.0 32 ............................ TGGGAAAACTATCGCGGCACCGACGACGGCAC 9854 28 100.0 32 ............................ ATGCACAGTTATTTTCTCTTGTTCCAGGGTTA 9914 28 100.0 32 ............................ AAAGCCGCAACAAGCAAAAAAGTATCATTGGT 9974 28 100.0 32 ............................ ATGATAGCGCCATGTCAAAAAACAACGTGTCT 10034 28 100.0 32 ............................ ACTAGGCAAGGCCTCGCCCGATTGTCGCCGTT 10094 28 100.0 32 ............................ AAGTTCATCGTGTTTAAGCGCGGCAAGTTACC 10154 28 100.0 32 ............................ TTATCCAATAACCATCCCAAACATCGGTGACA 10214 28 100.0 32 ............................ AGTGGTAGCCGGCGTCGGTTAGTTTTTTACCA 10274 28 92.9 0 ...........C.C.............. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTCTTGGCCGATTTGACGCCGCCCGGCGGCTTTCGCGGCTGAGCGACTATGTGCATTGCACCGGCATTCGCCCCGTGCCGGAAAAACTCACCGGATACGCGACTTATCAACGCCAACAGCCCAAAACCGGTAGCGAGCGTTTAGCCAGACGTTATGCCAAACGGCACAATGTGGACTACGATACGGCATTGGCGCGTTATAGCGCGATGCCGCATAAAACCATAGCGACGCCTTTTATCCATCTAAAAAGTTTGAGCGGCGACCAAGAGTTTTGCTTATGGATTAAAAAAACCGTGGTCGCGGAACTGTCAGGCAGGACATTCAGCAGCTATGGTTTGAGTGCAGCATCCAGCGTACCCGAATTTTGACCCATCTTTTTACCGATCTTTAAAAATATAAAGAAAACAGCCGGTTGCGTAGCATGGCTTTGGCGATGGGCAAATAAACCTAAATCGCCTGTATACTGCAACGCGACTGGCTTTGAAGATTTTTGAGGCCAG # Right flank : ATACTGGGGAAAGCAAGATTCGCGCGAAAAATCGTCACCGCCGCAAAGCACCACCATAAACATTTGACTTATATTGTTTTTTCAGCCAAGAGTTTTGATAAAGGATGAGATAACCGGCAAATTGTATTATTATTGCCGGCCTTTTACCCAGATCAGCCCCCTAAAGGATTACCCAAGCATGACACCCGCGTCTCTACGGCAATGCCGAATCAATGGAATAGTAATCGTTGTTGCCGGATTTATATGGTTTCTTTTACTAGGATACCGCGACCTGATAGAGCCTGACGAAGGGCGTTACGCCGAAATCGCTCGAGAAATGCTGAGTTCCGGCAATTGGATTACGCCGCGCCTTAACGGCTTCAAGTATTTTGAAAAACCGCCTTTGCAATATTGGGGCACTGCGATCAGCATGGCTATATTCGGAGAAAGCAATGCGGCCGCAAGGATATGGTGTTCCGGTCTCGGCTTTATCGGCGCATTATGGGCGGGTTACGTAGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8881-9434 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000077.1 Candidatus Methylobacter oryzae strain KRF1 C865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8881 32 100.0 36 ................................ GCGGCAGCCATAGCGAAACTGATTTTGCATGCCAAT 8949 32 100.0 32 ................................ CTGCCAATGACGGAGTAGAGTCTTTGATATTT 9013 32 100.0 32 ................................ TGTTATCCATGAGTTACCCCCTGCCCTAACAG 9077 32 100.0 34 ................................ TCGATGTAGCCAACCAAGCGTTTTGTGGCTCTAT 9143 32 100.0 32 ................................ CGCCGAACAAGCACGCAACTTGGCACGAAGGC 9207 32 100.0 34 ................................ AAATTGTTCTGCCATAATGTTGCCTCTAATAGAC 9273 32 100.0 33 ................................ GCCTGTCGATGCATCTATGTTACCAGTAGAAAG 9338 32 100.0 33 ................................ TGTCAACATCACTGCCGGCCCATTTTAGCGGCT 9403 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 33 GTCGCGCCTCGTGTAGGCGCGTGGATTGAAAC # Left flank : TTGGATGTCAGGGAAGCCAATGAATTTGAATATGCCCGCATAGCGAACAGCGTCCTGATTCCGCTTAATCAAATTCCGCAAAGATTGGACGAGCTGGACCCCGAACAAGAAATAGTAGTGATTTGCCACCACGGCGTACGCAGCCGGCAAGCCTGCATGTACCTTATCCATTCGGGCTTCAAGAACGTTATCAATTTAACCGGCGGAATCGACGCGTGGTCTTGCGAGTGCGATAGTTCGGTGCCGAGATATTAAGCCGCGAAACCCGGACGTTCAAATCCGTACAGCCAATGCCTAACTATTAACTTGGCCTTGTTTATCATGGTGCGAACCTGAAGCCCACATAAAAAACCGATATTTCACGTATTACATAATCCGTTGATTATTAATTATTTTTATTGCCTCAAAGAAATAACTTAAAATGTTTCCGGCAGATGCTTTGACCGGTTCGCAAATATTCGGCTTTTCGGCCGTTAAATTCAACCGGTTAAGCCTACGCC # Right flank : CTTGTGGGGCGCTCAATACAAAGAGAGCCGGACCGTTGCGCCTCGCCTAGGTAAAGTGCATGGTCCGCCAAAACAAAAAAGGCCCGGCATTCCTGCCGGGCCTTCCGTATCGCAATAAATCCTTACGCTACGTCAACTTTTGCCATATGGGCGATCAATTCGACAACCTTATTCGAATATCCCCATTCATTGTCGTACCACGACACCAGCTTTACAAAATTGTTGTTCAACGCAATACCGGCTTTTGCATCGAATATCGAGGTGCGGGGATCGTGGATGAAGTCGGATGAAACCACTTCGTCTTCGGTATATCCAAGAATGCCCTTCAATTCATTTTCGGAAGCTTTCTTAATGACAGCCTTGATTTCATCATAGCTGGCGGCTTTTTCAAGGCGAACCGTCAAGTCGACAACGGATACGTCGGCGGTGGGAACCCTGAACGCCATGCCGGTAAGCTTGCCGTTCAATTCGGGAATAACCTTGCCAACGGCCTTGGCGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCGTGTAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 1905-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFG02000113.1 Candidatus Methylobacter oryzae strain KRF1 C955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1904 32 100.0 29 ................................ CCGTTGGTGTTACTTGCCAAGCAAGCTAC 1843 32 100.0 32 ................................ ATAATCCCCCTCGCACTGTACCACCTCCACAA 1779 32 100.0 33 ................................ GCCTCGAAGTACCAGCTAACGAAGTACCAGCTG 1714 32 100.0 33 ................................ TGCCCAGCCACACTCATTGATAAAGTGTGAGCG 1649 32 100.0 34 ................................ GGGATAACTGTAATAAACAAGGGGTACATAAATT 1583 32 100.0 34 ................................ ATAATCACTCCTCGCACTGTACAGTATAGCTATT 1517 32 100.0 32 ................................ TCTTTAAAGAGGTCGACGAACAGACCGCATTA 1453 32 100.0 33 ................................ TTAGCATCACTATACCAAGAACCAGAAACGCAG 1388 32 100.0 32 ................................ CAGTGTTGCAGAAGTGGAAACAAAAGCATGGT 1324 32 100.0 33 ................................ GGTCATATTGTCGCGATGTCCCATGCTAAAAAG 1259 32 100.0 34 ................................ CTTGGCATGATCGGCACTCAGTTGTGCAACATCC 1193 32 100.0 33 ................................ GTCTGTCCGGCAAATGCCTTTTATCCCCGGCGA 1128 32 100.0 34 ................................ AAAGACGGCGATGATTTGGCAGGCGAGCCAGTCG 1062 32 100.0 33 ................................ CGGTCAGCGCAAGGGTCAGGGTTAATAATGGAA 997 32 100.0 33 ................................ GGGAATAACAATATCAGGCTCAACTACATCGAA 932 32 100.0 35 ................................ CCGTTATCGCCTGTCCAGGAGCAAGATAACCAGAC 865 32 100.0 32 ................................ AATCGGAATGTATTCGCCAACTGCCGATAGCA 801 32 100.0 32 ................................ AGCTATCGTTGGCGCACCAACGGGTTTTGTTT 737 32 100.0 32 ................................ CCGATAATATCCCGCATAACACCATCGTAGGG 673 32 100.0 32 ................................ TCGACGACGGAATTTGTACAACGCGCCATGCA 609 32 100.0 32 ................................ AAATCCAGGAACGCTTAATGGCTGGGCCGCTA 545 32 100.0 33 ................................ GCTGAACTCTTTGCTTTGCGCGGTCCAGGCATT 480 32 100.0 33 ................................ TTAAATTGTGTATTATGCTGACAACCGTCAGCA 415 32 100.0 34 ................................ GCGAAAAAAAAGTTGGCTGATGACTGGGGTAAGC 349 32 100.0 31 ................................ TACCCGATTGAAATACCGGACCCAGGAGACG 286 32 100.0 32 ................................ ACTAAAACGATCTGAAGTCGAACACATTGTTG 222 32 100.0 32 ................................ TAAGCAGCGTGGATAAGTAATTCATCATGCTT 158 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 28 32 100.0 33 GTCGCGCCTCGCGTAGGCGCGTGGATTGAAAC # Left flank : GTGCCGTTCTTGTGGAAATAGTGGAGTAATCGAGATGATGATTTTAGTGACTTACGATGTGAGTTTTGAAAACGAATCCGGTCCGAAGCGCCTGCGCCGGATGTCCAAATTATGCCTGGTGTACGGGCAGCGGGTGCAGTATTCGGTGTTTGAAATTGAGGTCGATATGGCGCAATGGACGAAATTGAAGAACGATTTGATTTCAGTGATGGACGAATCGCTGGACAGCTTGAGGTTTTATTATCTGGGCAATAATTGGGAGCGCCGCGTTGAACATATCGGCGCCAAAGCGCCGTTGGATTTGAACGGCTTGTTGCTGCTGTAATGCGAACCTGAAGCGCACATAAAAAGTCGATGTTTTGCGTTTTTGGTAATACTTTGATTAATAGTAGTTTTTTTGAACAGTGGGAAATGAGTTAAAATGGGTTTGGCGGATGTTTTGACCGGTTCGCAAATAGTTGGCTTTTGGGCTAGTGGATTCAACCGGTTGAATATACGCC # Right flank : CGACGACATCATGATTGTAGGCACCTATAAGGATGGTTGATGTGGCTACACTAAACCGGACACATTTTTTAAAATACTCTCAAAAAGATGTGAGTCCAAATGAGCCAAGAAAAACCCAACACCTATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCGCGTAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //