Array 1 369465-369643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJAY010000001.1 Staphylococcus aureus strain MKR53 NODE_1_length_634100_cov_129.446822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 369465 36 100.0 35 .................................... GTCAATTTCTCTTAAAACTATTCTTATATCTCTCA 369536 36 100.0 35 .................................... CTTGATTTGTTTCATACTGTAAAATTTGATTGTCT 369607 36 91.7 0 .................................TGT | A [369637] ========== ====== ====== ====== ==================================== =================================== ================== 3 36 97.2 35 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCCAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : TAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGGATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCATTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCTG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.10,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 378363-378542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJAY010000001.1 Staphylococcus aureus strain MKR53 NODE_1_length_634100_cov_129.446822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 378363 36 100.0 36 .................................... CGTCAGTGACGATAACACCTTGTTCACCGAATTTTG 378435 36 100.0 36 .................................... TCTGTTTTTTGTTATTTTTATTATACAACTTTGATT 378507 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CTTAAAGATTTAAACAATAGCGTCCCATATTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAACACCTAGAGATAATTTTATTGAGGTGAACAACAATGAAATTATCTTTAGACATAAATACTGATTTTGAAGTTACTACTCTTACAGATTTACCAAAATTAAAAATTGTTATGGAGAACTTAAACATGAAAATAAACAAAAGTGAAATAGCAAGACACATGGGTGTTGATAGAAGAACAGTTGATAAATATTTAAATGGCTTTGAGCCAACCAAAAAGAGAAATCGTCAGTCTATTATTGACAAGTATTACCCTATCATCGAAAAATTACTTTCATACTCTAGTGAACAAAAGTTCTACTATAAGCGTATTCTTTGGCAATATTTGAAGGATAAACATGGGTTAACGTGTGCCTATTCTACATTTAGAGCTTATATCCTTAAACATGATGAGTTTAATCGTTATTTTATGAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //