Array 1 584618-587190 **** Predicted by CRISPRDetect 2.4 *** >NC_015565.1 Desulfotomaculum nigrificans CO-1-SRB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 584618 32 100.0 34 ................................ CCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCA 584684 32 100.0 34 ................................ AATCAAGGCTTGAAGCAGGGAAGCCATTATGGGA 584750 32 100.0 36 ................................ AAAATACTCTTTACCCCGGTAAGTTTAGAATAAATA 584818 32 100.0 34 ................................ CCAAGCGAGTTAAACAGCAAAAACCTGAAGCTAC 584884 32 100.0 36 ................................ AGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGC 584952 32 100.0 34 ................................ TGTTACCAAACATCCAAACCCCACCACTGAACAT 585018 32 100.0 35 ................................ TGAAGCTTCTGTATAGCGGTTAGATAGTTACTATC 585085 32 100.0 35 ................................ TGTATCTTTTGGTCGTGCTGAAAATACCTTATAAT 585152 32 100.0 34 ................................ AAAACATTAAGGCCAAGTTTACCAAAATCCCTAA 585218 32 100.0 34 ................................ TTAAACGACCTGACGAGTCAACCCACAAATGATA 585284 32 100.0 36 ................................ ATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTT 585352 32 100.0 34 ................................ AGTAGGTTGTGAAGGTCCTCAACTGACTTAATAG 585418 32 100.0 34 ................................ TTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTT 585484 32 100.0 36 ................................ CCAGTTTAGACGATATACAGGTAACAGCCAGGCTTA 585552 32 100.0 34 ................................ TGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTA 585618 32 100.0 34 ................................ CAGCCTGAACGGTCTGTCCTCATCAACGAAAGCC 585684 32 100.0 34 ................................ CTCTGTCAGAACAAACCCCTCTGGCACCGGGATC 585750 32 100.0 34 ................................ CCAAAACCCCGCTGGACCACCTACAAGCAAATTA 585816 32 100.0 34 ................................ CTTTGGGACTGTCCCAACAATCCGCGATTATCTC 585882 32 100.0 34 ................................ ACCTTTAACGCTGAATGAGCAGGTGTCGATTTGG 585948 32 100.0 35 ................................ CCGGAGTTTGAACCCAAAACATATGACCGGCTCTT 586015 32 100.0 34 ................................ AAATACTTTGGCAGGTCGAAGGCCAGTCATGGCG 586081 32 100.0 34 ................................ CGGCTTATCCGCATTTACGCCCGGCCCATGATAG 586147 32 100.0 34 ................................ TAAAGACAACAGGTATGAAGAATATCCATTTTAT 586213 32 100.0 40 ................................ TGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAA 586285 32 100.0 34 ................................ TGTACCGAGATGATTATTACAACCCCAATAGCAA 586351 32 100.0 33 ................................ TCTAGGGATTGCCACCTACCAAGTAAGACAACC 586416 32 100.0 37 ................................ TACATATTTGAAAGGAGGAATTTTTTAAACAAATATA 586485 32 100.0 34 ................................ TTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTA 586551 32 100.0 37 ................................ TGATACGCGCTCATTTTTCTTGCGTTGCAAATAACAT 586620 32 100.0 35 ................................ CATTTGCTGTTGTAAGTATCGTTTGATGTTATCCC 586687 32 100.0 35 ................................ TGCTACAATATATTTTGCCTACGCGTGTAACTTCA 586754 32 100.0 33 ................................ ATTCCCAAATTGCTGCTAACAAATTTAACCTTT 586819 32 100.0 34 ................................ CCTTAAACAACGAGCCTAAAATGATAAACGCAAC 586885 32 100.0 37 ................................ TTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCT 586954 32 100.0 34 ................................ ATGAAAAGTATGGTTGGGGAAAACGGATACTTAA 587020 32 100.0 38 ................................ TGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAG 587090 32 100.0 37 ................................ TGGACAATTTGAAGAAGCAGCGGACCACATCATAGGC 587159 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 39 32 100.0 35 GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Left flank : TTTTTCTGGAAATAGGGGGTTTGTTGTGTATGATGGTCCTAATCACCTACGATGTTGACACTACAACACCGGAGGGAAGAAGACGCTTGCGTAAAGTGGCGAAGGAGTGCGTCAATTACGGACAAAGAGTGCAGAAGTCGGTTTTTGAATGCCTGTTGGATCCCGCACAATACGCAGATTTAAAGCACCGGCTGAATAAAATGATTGATTTGAATACCGATAGCTTACGTTTTTATTTACTAGGTAGCAACTGGAAAAAACGGGTTGAACATATCGGGACAAACGAAAGCTATGATCCGGAAGGGGTACTCCTAGTATAAACTTTTTTAAATGCGCGAATATATAGTAAGCATCGGAATACTTAGAAGTTCGCGATATAGAACATCCGGATATTATTTGGCGCAAATGGAGTTAAAATTCTGCCGCGAAGATACGATTTTGAAAGGTTCGCGCAATCTAAATCCTGATGTATTGAAAAACAAGCATTTTATGATATTGCT # Right flank : CTGCCACGGTGCCAGGACGTGTTTATGGTAATTTAAAAGTACACCACAAAGGTCATTGAAAAATCCCCCACCTTAGCCGATAATCCTCATAGAGCAAAATTACAGCTATGTGAGGAGCCGGGAGAGATGATCAAGTTGATTCAAAAACAAAATATACTCATTATGTATTACCGGGAGGGAAAGTCCCAGCGGGAAATTGCCAGATTGTTGGGTGTGGATCGAAAAACGGTCCGCAGATACATCAATAAATACGAAGAAAAGCGAAAGGAGTTGGAACAATCCTCTGGCCTAGTAGATCCCGGGGAACTAATTCAGGAAATTGTAGAACCCCCCAAGTATACCGTAGGAAACAGGCCCAAGCGGAAAGTTACTGAAGATATTCAAAGCCTAATAAAAAAACATTTGGATGAAAATGAACAGAAACGGAGGAATGGCCAACATAAACAAGTTAAAAAAATAATTGATATTTATGAAGCCCTAGTGGAAGACAATATAGACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 589883-592441 **** Predicted by CRISPRDetect 2.4 *** >NC_015565.1 Desulfotomaculum nigrificans CO-1-SRB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 589883 32 100.0 34 ................................ ATGGAAGTTGCTATCGATTATGGTCATCTTTTCC 589949 32 100.0 36 ................................ AAAAAGAAAAAAACTGCCATTGGACGGCATGGATGA 590017 32 100.0 35 ................................ CACAATCGTTGCAATAAACACCAGCGCCGTGTATA 590084 32 100.0 35 ................................ TCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTA 590151 32 100.0 34 ................................ CCTAGTAGCGGCTGGATAAGTTTACCTATAGATT 590217 32 100.0 35 ................................ AAATTTTATCACGAAAGTGAGGCAATTTCAATGAA 590284 32 100.0 34 ................................ TTTTGAGCAGGCCAGACTTTCCACGGTTGAGATT 590350 32 100.0 35 ................................ TTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTG 590417 32 100.0 34 ................................ CCAAAAATATCTCCGCTTCTCAATCTCTGTCAGC 590483 32 100.0 35 ................................ TTCGCAAATGTGAGCGTCATAAAAATGGGAGGATA 590550 32 100.0 34 ................................ CGGGTGTATTTTAATAAATTTACCCTGCACTGGC 590616 32 100.0 36 ................................ ATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCC 590684 32 100.0 35 ................................ AACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGA 590751 32 100.0 34 ................................ CAAAATTCCAGGGAGAACACCGCCTTTCTCATTG 590817 32 100.0 33 ................................ TTTATACGATACTATGTTGCAGCTTGAATCTTT 590882 32 100.0 36 ................................ TTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGG 590950 32 100.0 33 ................................ ATATCGTAGACTTTGGTTTTGCAGTTTGGGCAC 591015 32 100.0 34 ................................ GTGATAAACTTCCGCACAATTGCTCAATCCTCCC 591081 32 100.0 34 ................................ TCCTTTATATGCTTGTCCAAGTTTTGCATAGCTT 591147 32 100.0 35 ................................ TTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGG 591214 32 100.0 35 ................................ TGCTGATACTCCTGCAGATGTACCCTCTGACGTAA 591281 32 100.0 35 ................................ AACGTGACCGACTGGGTGGCCGAGGAAGACCAAGA 591348 32 100.0 33 ................................ TGGCGGCTAATGCGTAAATATCGGGCCACATCC 591413 32 100.0 36 ................................ CAAACCATCCCCGGCATAATGAACCAGCCGCCGTCC 591481 32 100.0 34 ................................ TTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTT 591547 32 100.0 34 ................................ TCAATGCCCACGGTTTTTGCCACGCCGCCAACGG 591613 32 100.0 34 ................................ GCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTT 591679 32 100.0 35 ................................ ATTAATAAATAAAAATTAATTAGTTTTAAAAAAAC 591746 32 100.0 35 ................................ ATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGG 591813 32 100.0 34 ................................ CCGGCCGCGCAGTGGTTCCACGGATGCCCAGACC 591879 32 100.0 35 ................................ GCCTGACTACTGAGCTAGACAACAATTCTAGGCAG 591946 32 100.0 36 ................................ TGGACAGACGAAAAACTCGGAACATGCACAAGGGAT 592014 32 100.0 35 ................................ ACGCCCAATTTGATTTAACATATCGTTCTTTTGAT 592081 32 93.8 35 ............G......T............ ATAAACGGAAAGACAGGAAAAATAACGCTAAATAC 592148 32 93.8 34 ............G......T............ TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG 592214 32 90.6 33 ....T.......G......T............ TCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTG 592279 32 93.8 34 ............G......T............ TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG 592345 32 93.8 33 ............G......T............ ATGAAAAAACAAAACCGCCTTACGGCGGTCTAA 592410 32 93.8 0 ............G......T............ | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 99.0 35 GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Left flank : TCCAAAACAGATTCGAGAAATATGACCTGGTTATCGCGGACGAGATGGGCTACATCTCCTTCGACAAAGAAGGTTCTGAGCTGTTGTTTACCCACCTGTCACTTCGGGCCGGGAGAAAATCCACTATTATCACTACAAACCTTTCTTTTGAGCGATGGGGGGAAATATTCCAGGATCCGGTTATGACTGCAGCTATGATTGACCGTTTAACACATCAATCATACATAATTAATATGAATGGGAATTCCTATCGAATGAAAGAAACAAAGGAGTGGTTGCAGAAGCAGCAATTGGCCTAATTTATTAGGCAGAACCCCTCGTGTATACTGTATTCAAATTGACACGATCATGCTTTGCATTGTCATGATTAATGAGATAATGTAAAAAAACTGTGGATAATTCAATGAAAGCATAACTCTTGTTGTTAAGTGGGGGAATTTTTAATAGCCACATGGGGGAATTTTGAGTTGACAAATACAAGGACGCGGGCACGTCCTGAC # Right flank : CTTCACCACCGTTTTGCCGTTTTCGGTGGTTTGAATGGTCGCGCCCTGAATCAAGTGAAGATATGGCCGCTCGTAATAAAATACGGGTGGCTTTTCCATTTTACAGCAACCAGGCGGGACAGCGTATGCCGATAACCGACGGCCCCATGGTTAGATATTAAGGAGATATTAAGGGGTAATTAAGGTTTCTCTCAGGAAGCATTCAGGGTATTTTCATCTTCTTAACCTAAGATAATTACAGAGGTTTAATTTACCAAAAAAATATTGAGGGGTGTTTAGAATGTTAAAACTAGGGAAAAAATTGCTGGTCTTGCCGTTGGTGGAATGCTCTTAGCCGGATCTATAGCCGGGGTTGCGTTGGCAGACTCAAACACAGAAAGTACACCGGATCAGTCCAAAGATCAATTTTACCAGGAATTTATCAGTGACTTTGCTGCAAACTTAGGTGTGAGTGCGGATCAAGTAACAGCAGCCCTTGAAGCCACTAAAAAACAAATGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 624167-621902 **** Predicted by CRISPRDetect 2.4 *** >NC_015565.1 Desulfotomaculum nigrificans CO-1-SRB, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 624166 37 100.0 35 ..................................... CTACAGATAGTTTCCATGCTTGTTGTCTAGGAGAA 624094 37 100.0 38 ..................................... AAAACATGTAAACATGGTTATGAGTTACCATTTGATAT 624019 37 100.0 38 ..................................... CCATACCAGCTAGTTTTCTTCGCTTCTAGGGCCATTTA 623944 37 100.0 39 ..................................... AGTTTGATGTGTTTTATGTTTAGACCGCTATTTTGGGGG 623868 37 100.0 39 ..................................... TCGATATACTCAATCACTTCCACCTTCCCGGTGGTGTAG 623792 37 100.0 36 ..................................... GCTTTTGCATATTCTCGAATTCCTGGGTAAGTATCC 623719 37 100.0 36 ..................................... ATGTAATAATCAGAAAAGGTTTATTTCCTGTTATAC 623646 37 100.0 37 ..................................... ATTCTCGATCTGGCCGGTGCCGGGTCGGGGAAAACTC 623572 37 100.0 37 ..................................... TTGGGGTGGCTTAAGGGACTGTTTAGTCGTTAAGAAA 623498 37 100.0 38 ..................................... ATCAGCAAATAGTGAAATAATTGTTTCTTTTATTGATA 623423 37 100.0 39 ..................................... CAGAGTTGCGAACTATGGCGCTAATCATTATATTTATAA 623347 37 100.0 36 ..................................... AAAAATTGTTATAGTTGATAGTAATGGTTTGGGGAT 623274 37 100.0 37 ..................................... GTAATCCTTTTAATAAATAGTTTTCAATAGCTAATCC 623200 37 100.0 37 ..................................... AAAGAAAGCAATAAAATCAAATATTATTTAAGGTATA 623126 37 100.0 36 ..................................... ATACCCAGGATTTTTTGAAACGGCCCGCCACCTATT 623053 37 100.0 38 ..................................... GCAGACACCAAATCCAAACCTTAAGTAGTTTTTCATTA 622978 37 100.0 36 ..................................... TTGAAGTTTCGCCTTTTGAAATAGCTCCAGCTTAAC 622905 37 100.0 38 ..................................... TGCTGATTACGAATCAGTTATAGGATGGTTTTAGGTGT 622830 37 100.0 38 ..................................... AGATGCAAACGAGGTGCTTCTGTTTGACGGTAAGCAGG 622755 37 100.0 35 ..................................... GGAGAATTGGTTATTCGTGACACTAAAAACCGTAG 622683 37 100.0 40 ..................................... TGCCGACTCGCATTGGCGCGCTATTCATGGAGATGGGAAC 622606 37 100.0 38 ..................................... TTTTTACTGGGCTGCCGTATGAAAGCTGCATGAGGCCA 622531 37 100.0 37 ..................................... ATTAAAAAAGTAACACAAAAGCAGGCAGATTATGTTG 622457 37 100.0 38 ..................................... TTGGTATCCGCAGTTTTGATATATCAACAATCTTGTTT 622382 37 100.0 35 ..................................... GGTCTTTACCTCCAGGACCCTTATCAGAAGCAGAT 622310 37 100.0 35 ..................................... ATCTTGCTGTCTGGCCTTTCAATGTAGTTTGTATA 622238 37 100.0 38 ..................................... ATCAGGGTTTTTTACCTGTTTAGCATTAAATATTGAAA 622163 37 100.0 37 ..................................... TTAGAATCTTAGGGATTGATGAATTATGAGCAAGTAT 622089 37 100.0 38 ..................................... CATGTGCATACCACGGATTGGTGTAGTGCCCCACGATG 622014 37 100.0 39 ..................................... ATGAAAGAGGGTAACACCAAGGTATGGACCCCTCTGGTA 621938 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 31 37 100.0 37 GTTTCAGTCCCCTTGTTTAGCGGGTGGTAATTGCAAC # Left flank : AAAAACCGAGGCCAGGGGTACGGTTTTATAATCCCTGTATTCACCCGACTGTTCTCCCCGCTCGGCAGAGGAGTAGTTATCTGCAGCACTGACCAGATATGCCAGGGGTCTAATCTGAGGGTCAGCCTGCTGCACCTGAAGTTCCGGAGGAAAAGAATTTGTTTCATGATGGCGTTGTACCAGCTCAATTAACAGTTGTACGTCTGCTACTTTTTCAAACACCTGATGCCAAGCCTTGATAAAACCAGCTGATACCGCCGGGTGTTTGCCAGCTACTTTTAAAGATCTTAAAAAATCACCCCTTTGCAAAAACTTACCAATATCATGCAATAGACCGGCCAAAACTATTGTTTGGTATTCCCTGTTCATATTGCGCCCCCGAATCATTTTTTTGATAAATTCTATATTTTTTTACCGATTCCTTTTTTTAGGTAAAAAGAAACAATTTATAACAATTTTATACTTACTACCTGCTTAAAATAATCATCACCGATAACTTG # Right flank : CGACTTTGGTCACTGGGCCTGAGGGCACGTGGTTATTGGTTTTTCAAAGGTCAAAATTCCTTGCTATTTGGCTTTTTGATCGCAAAAGAGTTTTCTGCATTAAAAGCCCTGCTATTTGCGAAATCCTTAAAATCAATTGATAATATTAGTATTCCCGAGAAGTTACTAAATCCCTGCAATGCGTTATATCTTCTTAGTGGGAAACAGTATGATACTGACTGAGCTGTCCCTGATAAAATATTCACCCTAAAATTTAACGAAAAATAACGCATAAAAATTAATTATATCAGTAGCTTGATTATATTGAAAAAATAAGGGGAACACCCCTTATTTCTATGTGTTACATTGAAAATAGGTTGACAAGTTGGTTTTATACATATTCCCGCTCTAATTTCTTCACCATTGCCTGACCGGCTGATACTTCTGTGATTTCCGCCATTAACCTATCCGCTTCCGCCACCGGTAAGCGGCAAGTGATGGTGGCTTTATCGGTGACGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGTTTAGCGGGTGGTAATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 804318-808975 **** Predicted by CRISPRDetect 2.4 *** >NC_015565.1 Desulfotomaculum nigrificans CO-1-SRB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 804318 37 100.0 40 ..................................... GAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAA 804395 37 100.0 35 ..................................... ACGAAAGGTGGGTAACAAAAATGGCAAACAATAAT 804467 37 100.0 38 ..................................... CATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTG 804542 37 100.0 38 ..................................... CGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGT 804617 37 100.0 40 ..................................... TAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATAC 804694 37 100.0 37 ..................................... GAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCT 804768 37 100.0 36 ..................................... AAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAA 804841 37 100.0 38 ..................................... TATGGCGGGACACCACCATGCCAACGGCCATGTTTTGC 804916 37 100.0 35 ..................................... GACAAAGACAGGTCAGACTTGGCAGCATCAATTAA 804988 37 100.0 37 ..................................... TTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTC 805062 37 100.0 35 ..................................... GCCCACCATAACAATGATTCTTTCCTTCAAAGGCA 805134 37 100.0 36 ..................................... GCTAAAAGAATTATTATTCCTAATGTTATTTAGCTG 805207 37 100.0 37 ..................................... ATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCC 805281 37 100.0 40 ..................................... AACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATA 805358 37 100.0 36 ..................................... ATGATATTCCTACCGTATTAGCCAGCGTTGCAATGT 805431 37 100.0 38 ..................................... TCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATG 805506 37 100.0 36 ..................................... GCTGATATAACATATGGAATGTTGCAGGGGTGGAAT 805579 37 100.0 36 ..................................... ACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGC 805652 37 100.0 38 ..................................... AACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACA 805727 37 100.0 38 ..................................... TCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCAC 805802 37 100.0 36 ..................................... GAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCG 805875 37 100.0 39 ..................................... AAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTT 805951 37 100.0 38 ..................................... TTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTT 806026 37 100.0 38 ..................................... AACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCG 806101 37 100.0 37 ..................................... CCACTAATGGATACGATGATGTTCTCAAATTCATCGA 806175 37 100.0 38 ..................................... ATATGATCATCTATAATATTTAATATTTGTTTAATTAT 806250 37 100.0 38 ..................................... CTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATAT 806325 37 100.0 38 ..................................... GAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATT 806400 37 100.0 39 ..................................... AAAGATACAGAAATCAGATTAACTGTGATATGGAAAATA 806476 37 100.0 35 ..................................... AATACTTTAGCAAAATATTCTTCTTGTTCTTTTGT 806548 37 100.0 39 ..................................... AACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGA 806624 37 100.0 37 ..................................... GCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCC 806698 37 100.0 38 ..................................... TCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGG 806773 37 100.0 39 ..................................... ATTTATTATAAAAATGTATATAATGAAGAATATTACTTT 806849 37 100.0 40 ..................................... AGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAA 806926 37 100.0 37 ..................................... CGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAA 807000 37 100.0 37 ..................................... GCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCA 807074 37 100.0 38 ..................................... TCACGATTACATAAGTGGCCGTTAAAAAACCACATTTT 807149 37 100.0 38 ..................................... TCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCT 807224 37 100.0 38 ..................................... TTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAG 807299 37 100.0 38 ..................................... AATATTTCTTATATGGATTTATTTTCAATGGGGAATGG 807374 37 100.0 38 ..................................... GAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATA 807449 37 100.0 38 ..................................... TAAATAGGCAAATGAATCACGATAGTTAGGTGACGGAT 807524 37 100.0 38 ..................................... ATCAACACACCCATAATAGTAATACCTACAGGAAGTAA 807599 37 100.0 37 ..................................... ACAAACATCCAGACCCCATAAGGATATCTCTTAGCCC 807673 37 100.0 38 ..................................... GGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATA 807748 37 100.0 38 ..................................... GAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATAC 807823 37 100.0 39 ..................................... GAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTT 807899 37 100.0 34 ..................................... GTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGC 807970 37 100.0 36 ..................................... TTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGC 808043 37 100.0 38 ..................................... ATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTAT 808118 37 100.0 38 ..................................... AGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTG 808193 37 100.0 38 ..................................... TTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCT 808268 37 100.0 40 ..................................... CGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTG 808345 37 100.0 38 ..................................... AAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTAT 808420 37 100.0 36 ..................................... AAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTA 808493 37 100.0 35 ..................................... GGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACT 808565 37 100.0 36 ..................................... ATGACCGCCTTGTTTGCATTATATATCGCTGAGTAT 808638 37 100.0 37 ..................................... GTGCTTACAGGTACATCAACGCCGACGTGGTATATGA 808712 37 100.0 39 ..................................... ACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTC 808788 37 100.0 37 ..................................... ATTATTGCTATAGTTGATTCTGATTGTGATTATGCAC 808862 37 100.0 38 ..................................... ACAGGCATCAGCGCAATTCTGTGACTGTTTTTCAGCCC 808937 37 86.5 0 ...........G...............T.T...C..G | T,G [808963,808970] ========== ====== ====== ====== ===================================== ======================================== ================== 63 37 99.8 38 GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC # Left flank : TATACCTTCTCCGAACCAATGGTCATGGATTTAAAGTTTGGGGAAAAAAGAAAATTTCACAGATTACAAACTACTGCCTATGCCTTGGCAATGGAAGCGGTCTATGAGTTTCCCGTTAACCTTGGGTGTATCGTTTATGCCAAGATAAAAGATGATCGGCTAATTATTGAAAAGGATATTCATATTATTGATGATGAGTTGCGTCAGTGGTTCATTGAGGAGCGGGATGAAAAACTGAGAATGATAGAGGAAGAAATAGACCCGGGAGTCAAGGAATGTCCGGATAGCTGCCATATTCGGCAACTATGCTACTGAATTGCTAGAGGAATTTTGCCATCAACAGGGAAAGATATTAATAAGCTTGGTCTTAGTAGAGGTTTCGCAAATACCCAGGGACTTATTGCAGATAATATGTCTTCGGAAAAAATCAAGCAAAAGGTGTTCTCTTGTTCTTTGAAAACTCAATAACTACGCGGTTTCCAGAGTGCAAACCGAGGTCG # Right flank : GATAAAAATTAATAAAATGGCAGCCAATTTCTTAATAGATCACTTGCCAACATAATGTTAGTTTTGAATATTACCTAATGCATGCCGCAAGCGGTAGCTATCTCCGCTGAAGGCTAAAATATGGGCATGGTGTACCAACCTGTCAACTAGGGCGGCTGTTAATTTTGTATCACCAAAAATGCTACTCCATTGTCCAAACTCTAGATTGGAAGTCACTATTACACTCTGGCGTTCATAGCAATCGGCGATGACATGGAAAAGTAATTCCGACCCGGTCTGATGAAATGGGACGTACCCTAGTTCGTCCAGTATTAATAAGTCTGCTTTCAGTAATTCTTTACGGAATTTGGTCAGGGTACCTTCGGCATGTTTCTGTTGTAGCACACTCACCAAGTCGGATACACGAAAGAAACGTACAATTTTTCCCTTCCGACAGGCCTCAACCCCTAAGGCTATGGCCAGATGTGTTTTGCCGGTACCTACTGCGCCAAGCATTAATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //