Array 1 44336-44744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVD010000030.1 Clostridium neonatale isolate CB12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 44336 29 100.0 35 ............................. TTAATTCTTTAAGTTCATCTTTCTCTATAGGCTCA 44400 29 100.0 35 ............................. ATACCACCACTAGAGTTATCACTATCCTCACTATA 44464 29 100.0 35 ............................. ACACTTGTTAATATACCTAATAAAGACTGGAGACG 44528 29 100.0 35 ............................. CAAATATTAGCAGGAGCTACATCAAATTGGATGGG 44592 29 100.0 37 ............................. ACTTCATCTTGCGTTAAATTTAACGCTGTTCTCCAAG 44658 29 100.0 29 ............................. CATATGGCTACTGCTGGAGGATATGCAAC 44716 29 89.7 0 TGG.......................... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 98.5 34 ATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TTGAAGGATATTATTTAAATAGTAATGGTGCATGGACAACAAGTGTTCCAGCTCAAATACAAAATACTAGTGTAAATACACCCTCAACTATTGATAATAATGATGTTTCAAGTGGAGTTGTAAAGAATGCATCAGATACAGTTTATGTATCTAGCAAAGGAATATATCATAATACAGCAAATGCTCATGGAATGAAAAATTCAACAGCTATGAGCAGATCAAAAGCACAAGCAGCAGGATATAAAGCATGTGAAGCAAAACATTGCCCATAAAAATAAAAGCTTGTGAAATAATCATTGATGTTTTATTAAAGTATACATTGTATTTACCAAGCGATTTTAATTTATAATTAGGTAAAACACTGCAACAATAGTGACTTTATCTGAGTTCATTATAATAAAAATGAAAAAATAGAAAACACTTGGTAAATTTTTTGAAGAATAGCGTTATTTCTTGGATAGAAGAATTCTTTTATTTTTAGAATGGCTATTTTTCTAAGA # Right flank : TATGATTAAATAGCTTTCTAATTATTATGTAAAATATTAAAAATATAAAACTAATGGTTTTATAATACAAAAGGATTTTTTATAAAAATAAAGGAGTCTGCAAGATGTATATAGACAAAATTAAATCTAAAAAAGTATTTAATGATTATGTTGAGAAGTATGATACCAGCAATGAAAAAATAAAATTAAAAATAGATCATACATATCGTGTAAGTGAACTATGTGAAAAAATAGCACCAAGCTTAGAGATGACAAATGAAGAAATTGATATTGCATGGTTTACTGGACTGTTACATGATATAGGAAGATTTGAACAGGTAAGAAGATATGGAACATTTAATGATTCTAAGTCAATTGATCATGCTAGGCTTGGGGTAGAGATTTTATTTGAAGAGGGTAAAATAAGAGAATTCATTGAAGATACAAGTGAAGATGAGTTAATTAAAAATGTTATTGAGTGTCACAATTCGTATAAGATACCTGAATATTATTCAAAGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 48106-47812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVD010000025.1 Clostridium neonatale isolate CB12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48105 30 96.7 36 ............T................. AATAAATTTTTATCTTTCTCAGTGTTCTTAAAACTT 48039 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 47973 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 47907 30 96.7 36 ...............T.............. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 47841 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 92.7 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCACATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGATCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCTGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCCATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACTAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 91985-90981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVD010000048.1 Clostridium neonatale isolate CB12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 91984 30 100.0 35 .............................. TTTATTAATTTTTGAATTTTATTTTACTGCATCCC 91919 30 100.0 37 .............................. CAACTAAGGTGTAATGTTTCTGTAATGATTTATTCCA 91852 30 100.0 35 .............................. GGCAGATGAAGAAATATTTTTAAAGCAGTGCAATG 91787 30 100.0 35 .............................. AATTCAATTACCCATACCCATGGATTAGCATCAAA 91722 30 100.0 34 .............................. CTGCCTAGGTTCTCATTTCTATACAATTTAACAG 91658 30 100.0 34 .............................. AAAGGTTCATTTTGTCTATGATAATATAGAAGAT 91594 30 100.0 34 .............................. TCTAGTTTAGAAGATGATGTACAGGCAACAAAAA 91530 30 100.0 35 .............................. CTACTTATACCTGCGATTCTAGCTAATCCGCTTTT 91465 30 100.0 35 .............................. GGGAATGGAGATATGTAATTATATTATTAGTAGGC 91400 30 100.0 35 .............................. CTTGTAAGAACTTTTTTAAAGATATCTGCTTCATT 91335 30 100.0 34 .............................. TCACCTTGCTTTATAGGCATAGTTAAGCAATAAC 91271 30 100.0 36 .............................. ATGTTAATAGTCGGAGCAATCATGGTTATAACAGGC 91205 30 100.0 35 .............................. GACTAAAAAGCAATTAGTTAAAGATGAATAGTTTA 91140 30 100.0 33 .............................. TGAATTTGGTTTTTCCCAAGAAGTTGGGAAAGA 91077 30 96.7 35 ....................T......... AATCCATTAGATTTCATATCTTTATCATCACAAAC 91012 30 80.0 0 A.....A...G....T.....A.......G | A,A [90985,90988] ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.5 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : AGAATTTATTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAACTAATTATAACTATGCATTTGTGTTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTATTTGTATTATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTCAGCTATCTTTATTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAACTTCATTCCTTGGTAAATTTTTTGTGATGTGGTATTATTACTAGTATAGGGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : TATGAAAAATGGTAATAAATAAGCAGAGATAAAGAGCATAATATTCTTGATAAAATCAAATTTTAAACCTATTAACAGAAAGGAAAAACTGCCTATGCTAAATAAAATTGCATTGATTGTTATAGATATGCAGAAGGATTATATTGGAGAAGAAAGCAGACATAATTACTATCCTAATACACTTATAGATAAGGTTAATGAAAGAATTGCCATAGCAAATAATAATGGACAAATGATTATATATGTTAAGAACAAGGGGAAGCGAAAAAAGGAAATATATATATCTGATTTTGTGAAAGGATTATCTATTGCTTCAAACTTTATTATAGAAAAAGGCAAAGCAAGTATGTTTGATGATGATATTTTCTTTGAATTGTTAAAAAATAAAGATATATGCAAAATAGAGACAATAGGAATTGATGGAAATTGTTGCGTTGCTTCTTCTGCCTTAGATGCAATGAAATTAGGTTTTTCAGTTATTTTTCCTTTAGAGTATATTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //