Array 1 64807-62885 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWW01000010.1 Salmonella enterica subsp. enterica serovar Braenderup strain NCTR730 NCTR_730_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64806 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 64745 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 64684 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 64623 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 64561 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 64500 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 64439 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 64378 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 64317 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 64256 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 64195 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 64134 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 64073 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 64012 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 63951 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 63890 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 63829 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 63768 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 63707 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 63646 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 63585 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 63524 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 63463 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 63402 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 63341 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 63280 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 63219 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 63158 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 63097 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 63036 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 62975 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 62914 29 89.7 0 A...........TC............... | A [62887] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82191-81065 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWW01000010.1 Salmonella enterica subsp. enterica serovar Braenderup strain NCTR730 NCTR_730_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82190 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 82129 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 82068 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 82007 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 81946 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 81885 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 81824 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 81763 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 81702 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 81641 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 81580 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 81519 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 81458 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 81397 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 81336 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 81275 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 81214 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 81153 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 81092 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //